Array 1 134149-132361 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYP01000013.1 Salmonella enterica isolate STY78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 134148 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 134087 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 134026 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 133965 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 133904 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 133843 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 133782 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 133720 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 133659 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 133592 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 133531 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 133470 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 133409 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 133348 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 133287 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 133226 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 133165 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 133104 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 133042 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 132939 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 132878 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 132817 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 132756 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 132695 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 132634 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 132573 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 132512 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 132451 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 132390 29 96.6 0 A............................ | A [132363] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16614-15121 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYP01000043.1 Salmonella enterica isolate STY78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16613 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16552 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16491 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16430 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 16369 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16308 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16247 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16186 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16125 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16064 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 16003 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15942 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15881 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15820 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15759 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15698 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15636 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15575 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15514 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15453 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15392 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15331 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15270 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15209 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15148 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //