Array 1 111268-110043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJP010000087.1 Pasteurella multocida strain 92_2667 Contig_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 111267 36 100.0 30 .................................... TTGTAACAATCGCAATTCTCCTTGAGTAAT 111201 36 100.0 30 .................................... GAAGGTGAGTGGTCTGGGGTTGCTCCGCCT 111135 36 100.0 30 .................................... TTTGGTAGCATAAACAAATTGCAGTGTATT 111069 36 100.0 31 .................................... TTGTGTTTCTGTTTACTGGTAGTATCCCAAA 111002 36 100.0 30 .................................... TTACCTGATGGCGAATATGTTGCAGAAATT 110936 36 100.0 30 .................................... TAGATAAGAATTGGTGTAATCAACAATGTC 110870 36 100.0 30 .................................... TTAGTTTAGATATTCCCTTTGGGGATAAAA 110804 36 100.0 30 .................................... GCAAGACAACATCACCAAGCAAAACACACT 110738 36 100.0 30 .................................... TAGAATTATTAAAATAAGCAATTAACAACG 110672 36 100.0 30 .................................... GATAATCATCGTTGGGAAACGCCCGTCTTT 110606 36 100.0 30 .................................... CGCTCTCGTTAACTTATCCTCAAAATTTCA 110540 36 100.0 30 .................................... TTGAACAAGTAGTAGAGTTCATCAACGAAC 110474 36 100.0 30 .................................... GTACGCTAAGTTTCCTTTAGACAGCTTATG 110408 36 100.0 30 .................................... TTTAATCAAGCGACTTATCCTGATTTATAC 110342 36 100.0 30 .................................... AAAAATTAAAGGCGAGGTTTACGCTTTTTT 110276 36 100.0 30 .................................... CAAGCAAAAGATAAATTACTTGCGAAACTC 110210 36 100.0 30 .................................... TGTGAACAGATTATTGTCAGACCGTTTAAA 110144 36 100.0 30 .................................... CCCATGACGGTAAACATCACAATCAATGCG 110078 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : AAACTCCAGAGGAGTTAGGGCTAAAATCTACTATTGAACAATTAGATAAAAATAATCCAAGTAATGAAGAAGTTAGATATGGCTATGTGAAAAAAGAGGGATTTAATAAAGCAATATATGACAGCTTCAAAGATGTATCAACCAATATAGAAAAACAAAATAATAGAATCTATGATGATAAGAAATAGGAGAATTTTATATGTTAAAGAAATTAATCCTTTTCATGAAAAAATTGAGCTTGTTCTTAGATAAATTAAATGAAGAACAAAAGAAATTGAACCAAAAAGAAAAACCTCAATTTATCCGTATGAATATAAATGGATTGCCATTAAATAAAAATGGAGTTGATATAGAGGGGAATATCTATGGCTCGACAAGAAAAAGAGATTAGTCTAATAGATTACATTGATAGATAGGTTAGAAAATGAGCTTTAACGCAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTA # Right flank : GTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATACTCAAAAATTACTTAAATTTACGATATTTAGTAGTCTATTTTTAGAAATTTTTTCTTAAAAAAACAATTGATTTTGTCTAATAGAGATAGCATCTGTTGTATGTTCCCCCTGTTTCTGAGTCACTCTAGGCTAAAATAGAGAATAGTCTTTTCGTTTATTTTTATAGAGTATATAAATAGTCTACTTAGAAAAGTAGCATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 293080-290891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJP010000138.1 Pasteurella multocida strain 92_2667 Contig_140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 293079 28 100.0 32 ............................ GGAAGTGTCGGAATCGGCGACCGCACTTAAAA 293019 28 100.0 32 ............................ CTTGATGGGTAACAACTAAATCGCCAATTTTT 292959 28 100.0 32 ............................ ATTTAAATGATGAGTGTTAGCTGGGTGGTTAA 292899 28 100.0 32 ............................ ACAAAAACGCTGTTTAACATATCAATTTCAAT 292839 28 100.0 32 ............................ AAATGAAATAAACGGTAACTATCAGATATACA 292779 28 100.0 32 ............................ ATTTGTTGTCTTCTGCGAAATGGTGCGCTTCA 292719 28 100.0 32 ............................ TCTATCACATTTTGCGTGATGTAAGACAGTTT 292659 28 100.0 32 ............................ GTAATCGCACGATCACCGACCCATTCTTTAAG 292599 28 100.0 33 ............................ AAGGGAATCGAACGCATCGGTAGCAAGGTGCAG 292538 28 100.0 33 ............................ AATAATCACATCTCCACCTTAAATTCACAAAAA 292477 28 100.0 32 ............................ ATTGTGGAAAGTCATTAGAGATTGTATTGCAG 292417 28 100.0 32 ............................ AGAACCCACTCCAGTACCGCCACTATGATTAC 292357 28 100.0 32 ............................ ACGTTATTGAACCGATTGGTTATTCAGTGAAG 292297 28 100.0 32 ............................ GCGCTAACCATGTTTGCGCGGCTATGCAAGAT 292237 28 100.0 32 ............................ TTGCACTCCGCTTTCATCGTGTGCGTTGATGA 292177 28 100.0 32 ............................ TGAAATTTTAGCTAGCGTCATCACATCAACTT 292117 28 100.0 32 ............................ GCTAATTGCCTCTATTTCTTCGTCTGTCATCT 292057 28 100.0 32 ............................ CGGCGGTGTAATTACCTTTTCTTTATTGACTA 291997 28 100.0 32 ............................ CATCTCGGAATATATAACAATTAGATGTAGAG 291937 28 100.0 32 ............................ TGTTAAATCTTTTACACGAACAGGGAACTGAT 291877 28 100.0 32 ............................ AACGCTTCATCTACACTGTCATCAAGAAACAC 291817 28 100.0 32 ............................ ACATTAAATACGAAGTCAGTTAATGCCTCACG 291757 28 100.0 32 ............................ CACGCAACCTGTTTTGGTGTGCCTTTTAATAC 291697 28 100.0 32 ............................ AAGTTGCGTTTTCTTCTAAATCGTTAATTTCA 291637 28 100.0 32 ............................ ACAATGGGCGCATACGTTCAATTTCTTCTCTT 291577 28 100.0 32 ............................ TTATGAGTCATTAGAAAAACACAGAAAGCATG 291517 28 96.4 32 ...............G............ GCTACAAATGCCGGTTGAAACTGTTAAATCAG 291457 28 96.4 32 ...............G............ GTGTTAATTAGCCCACATATTCGTGGTCGTTT 291397 28 96.4 32 ...............G............ ATAACCCTTACCCACATATTTAAGGAAAGCCA 291337 28 96.4 32 ...............G............ ACACGTGCGGCTAAATCAAACGTGGGAATACC 291277 28 96.4 32 ...............G............ AACAGTGCGGAAATTCTTCAATTCACTAAAAC 291217 28 96.4 32 ...............G............ AGCGGTCAATGCTTCCACCACTTGATAAATAC 291157 28 96.4 32 ...............G............ TTAACTGCGCCTCAGTACGCGCCATATAGCGT 291097 28 96.4 32 ...............G............ AGAGCCGAAACCTGCAACATAAGCTCTGAATT 291037 28 96.4 32 ...............G............ GTATTCAGCAAAATTTAACTCAGGAATGAGAC 290977 28 96.4 32 ...............G............ TTGGATGGGACAATTCGTCCAGCGACAGATCT 290917 27 82.1 0 ...............G....T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTAACTGCCGTATAAGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCAGCCTGTTAGCTTATATTGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCTTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAAGCAGCTTAGAAA # Alternate repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 91919-88950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJP010000147.1 Pasteurella multocida strain 92_2667 Contig_149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91918 28 100.0 32 ............................ TTTAACAGGATAATGATCATGTTCTGTAAGCA 91858 28 100.0 32 ............................ TTTTTTAATTCTCTTTTTTCTTCAACTGTTTT 91798 28 100.0 32 ............................ ATTGCAATGTAGGCTTTGTATTCAGCAAGATA 91738 28 100.0 32 ............................ TTGATCAATAAACACTTGCAACAAATCAGGAT 91678 28 100.0 32 ............................ ACTTACCCCATTGAAATTTCCCTTTGAATTTA 91618 28 100.0 32 ............................ TTTTTTACGGAGAGCTGCAAGAATATCCGCAC 91558 28 100.0 32 ............................ TTTTAGGTAATGGAGGTCCTTTCTCTAGACAA 91498 28 100.0 32 ............................ AGCGGTCCTGTGTGCCTCATCAAATATTCCGT 91438 28 100.0 32 ............................ TACGACAAAGCTGACTGGTAAAGTTGGAGCTA 91378 28 100.0 32 ............................ GTTATGATGATTATGACTTTAAGAATCAACAA 91318 28 100.0 32 ............................ TTTTCCTTTTTGTTTTTTATATGTTTCGTCTG 91258 28 100.0 33 ............................ TCATAGTTAGTTAGTTTATGTTAATCTTTATGA 91197 28 100.0 32 ............................ TTTTAGATAGTGTTGAGTCTTCGACACTAATA 91137 28 100.0 32 ............................ CAATCTTGGTGATATGGCTGAATTACCACAAA 91077 28 100.0 32 ............................ ATTGAACCTTTATTATTGCCTTTTATTTCTTC 91017 28 100.0 32 ............................ ATTTGCCACTTCTAACTTAACTTGTGCATTAC 90957 28 100.0 32 ............................ CGTAGCGAATTCCCACAACTAATTTGTGAGCG 90897 28 100.0 32 ............................ TTACCGTCTTGTGTGTACTCATGGAATTGAGC 90837 28 100.0 32 ............................ ATACTACCTAGCGAATACATATCACAACGCCA 90777 28 100.0 32 ............................ TCAAAGAACGTTTACCGATTGAGCTAGAATAT 90717 28 100.0 32 ............................ TCCAACTCTTTGTCATGTGTCCCTTCACATTG 90657 28 100.0 32 ............................ ACAAGCATATTCCCTTGTTTGAACTTACTTGC 90597 28 100.0 32 ............................ GTGTTCATTAAACGATTGAATAACAATCTCGT 90537 28 100.0 32 ............................ AAAGCATATGATTGCGCATATTCAAATTCATC 90477 28 100.0 32 ............................ AAAAGCAGTGAATGCGGTTAAAGCGTTAGTGA 90417 28 100.0 32 ............................ AGAGTGTATTCAAGTACAGCGTGTGGATCAAG 90357 28 100.0 32 ............................ TCTCGTTTAGAGGAGCTAGATAAAATCAAAGA 90297 28 100.0 32 ............................ ATTAAGGGATCACTTGGCGAATAATAGAATCA 90237 28 100.0 32 ............................ ATTCACTACGCTTTGCGGGCGAATCAACAAGT 90177 28 100.0 32 ............................ ATAGCCAGATTGGTGCTAGAGTTTAAAGCAAG 90117 28 100.0 32 ............................ GCAATGCGTAATTCTTTGCGATGTTTTTCGAT 90057 28 100.0 32 ............................ AATATCATTAGCGATACAGCAGTATTTGAACT 89997 28 100.0 32 ............................ GAAATTGCACAAAGCGGACTTCGCACAAATGG 89937 28 100.0 32 ............................ GCACTTTTGATACAATTTTAAAAATTCATCTT 89877 28 100.0 32 ............................ GTGCGTAAAGCAACACCAGAACAACTCAGAAT 89817 28 100.0 32 ............................ GTTTGATGCGTTTTTAGCCGAGAACCCAGCTT 89757 28 100.0 32 ............................ ATTTTGATTTGATTTGGATCATCAAACAAAAC 89697 28 100.0 32 ............................ AGTTCTGATTTTCTTCCGAAAGCTAGTGCTAA 89637 28 100.0 32 ............................ TCAAACTTCTGACGTTGCCCGATGATTGCGCC 89577 28 100.0 32 ............................ AGAAGAACAAATAGAACTTTTCGGAATGTTCT 89517 28 100.0 32 ............................ CGATACTTCCGGCTATTGCGTTGTTTATATAT 89457 28 100.0 32 ............................ AGTTCTGATTTTCTTCCGAAAGCTAGTGCTAA 89397 28 100.0 32 ............................ TTGTCTTCGAACTAAAATATTTCCGCTTTAGC 89337 28 100.0 32 ............................ TATAACTTCAAATCTGATTTTTTTCCCTGTTT 89277 28 100.0 32 ............................ AATAATCCCACAGCGTGAGAGTGTGCGGTTTT 89217 28 100.0 32 ............................ ACAGTTAGTGCTTGATGAAATCACCGCAAACG 89157 28 100.0 32 ............................ GATGCACAAAGTGCGGTGAAAAACATTTATGA 89097 28 100.0 32 ............................ TCTGCATCTTCAAATGTGATGTTTTCGATTAA 89037 28 100.0 32 ............................ CTTTATTCCAAGCACAGTGAAAGCCAATTTTG 88977 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGTGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //