Array 1 8906-12534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJITN010000156.1 Xanthomonas codiaei strain X203 Contig_159_228.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8906 28 100.0 32 ............................ TGACAGAAAAAACATTGCCCCAATGCCGCACA 8966 28 100.0 32 ............................ ATTCGCTCACCATCGTTCCACACGACGCCGCA 9026 28 100.0 32 ............................ AAGGCGGCGCGCATCTGGTCGGCGCTGCCCTG 9086 28 100.0 32 ............................ GCGAACCCGATCGTGCGCATGCCATCGGCGTA 9146 28 100.0 32 ............................ GACCGAACACCGGCCATGAACCGATCTACGTC 9206 28 100.0 32 ............................ ACCGGTGTGAGAAGCAGCAGGCATTGTGCGCA 9266 28 100.0 32 ............................ AGTGCGCTGGCATGGATAAGCCGTCGAAGCTG 9326 28 100.0 32 ............................ ATGCGGGCGGCGATCTGGTCGCGCTCTTCGTC 9386 28 100.0 32 ............................ ATGCGATACCAATCGACACGCAGCGGCGCCTT 9446 28 100.0 32 ............................ AGCGCGATGACAGCGGTGATGTCGATGCGGTG 9506 28 100.0 32 ............................ TGATTGGTCGAGTCACAGTTGGCCGAAAGTGC 9566 28 100.0 32 ............................ ACGCGGGTGAGCGGCCAGTGGCCCCGCGTCCG 9626 28 100.0 32 ............................ AGATCGCCGAGCTTGAGCGCTTGCGTGACGAA 9686 28 100.0 32 ............................ TGAGCATCTGCGCCGGTCGTCGCCGGCGGCCC 9746 28 100.0 32 ............................ CAGCACTTTGCGCATGCCCTCATCGTCCAGCA 9806 28 100.0 32 ............................ CTTAGGAGGGGGACAACACAGCAAGCTATAGC 9866 28 100.0 32 ............................ TCGGTGACGTCGAAGGTCGGCGGTCGCCCGAA 9926 28 100.0 32 ............................ TCACAGTGCGCCATGAAGCCCTGCAACGACTC 9986 28 100.0 32 ............................ TGATCGTCATTCGGCATCGCATCGATCCGCTT 10046 28 100.0 32 ............................ TATGCTCGGCCCGATAGTCGCACGACGAAGGT 10106 28 100.0 32 ............................ GACGACCAGCCGGTTAGCGCCTTCGTTCCACA 10166 28 100.0 32 ............................ ATTGTGCGATGCCACGCGCGCCAGTACCGCCC 10226 28 100.0 32 ............................ CAATCGTGCGCCGAGTAGTTCCCCGGCGATAC 10286 28 100.0 32 ............................ TGCTGCCGCGTGCATCCCGGCCCGTTCGTACT 10346 28 100.0 32 ............................ GACACGCTTGCGGGCTACACCGAACATACTGG 10406 28 100.0 32 ............................ GAAGCGATGCTGCGCAGTGACCTGGCGATCGC 10466 28 100.0 32 ............................ TCAAGGAAAACAAGTGGGGACGCGCATGGTCG 10526 28 100.0 32 ............................ TGGCGGGAACTAGCGTGTGCGCCAGGCGAGAA 10586 28 100.0 32 ............................ TAAAGATGTATCGCGTTGGGCCGCACGATGCG 10646 28 100.0 32 ............................ AAATGCTGTGCGGCTTGCCCATCCACTTGATC 10706 28 100.0 32 ............................ ACCCCGACCGCGCGGGCGGCGATGCAACCGAC 10766 28 100.0 32 ............................ ATCGACGTTTCCCGCCAGACGCTCTACGAGTG 10826 28 100.0 32 ............................ ATGCAATCGACGGCGTCATCGTTACGCGTATC 10886 28 100.0 32 ............................ CAAGGCCGGCAAGGCCAAGCCCAACAGCCCGA 10946 28 96.4 32 ..........A................. AAGTGGCGCCTGCTGATACATGGCGGCCCACC 11006 28 96.4 32 .................A.......... GGAATCGGGCCTGCTTGGCTCGATGGGTTGTA 11066 28 100.0 32 ............................ TGCAGCAGAATGGTGTGCGGCATTACCTCGAT 11126 28 100.0 32 ............................ GCCTGACGGGCGGCGAGGGCGGCTTGCCAACC 11186 28 100.0 32 ............................ ACCGGCACAGCAGCAGGCGCGGGCGGGGCGGT 11246 28 100.0 32 ............................ ACATGGGAAATGAGGCGACCAACAGGGCGAAC 11306 28 100.0 32 ............................ CTCGGCGCGCACGTCAGTGTGGTGCACCGGCA 11366 28 100.0 33 ............................ GTCATGGCGAGCGTCGTACTCGACACTGCGAAA 11427 28 100.0 32 ............................ AGCGTGATCGGGCCGGCGTTCTTTCGGATCAA 11487 28 100.0 32 ............................ GATCCGGCGGGCAATCTCCAGGGCGATGAGGC 11547 28 100.0 32 ............................ GTTGACCGCATAGGCTCCGCCACCTAAGTGCT 11607 28 100.0 32 ............................ TCCACACGCGGCGCGGCTTGGCGAAGGATCAC 11667 28 100.0 32 ............................ ATCGGCCAGGGTGGAGGCGCTGTTGACCGATC 11727 28 92.9 32 A.....................A..... TTGACGATCGAAAAATCAAGGATCACGTTGGC 11787 28 100.0 32 ............................ CTCTACTGGCGAGATGGCGTCGCTTACCTCAA 11847 28 100.0 32 ............................ TGGTTCCCGGTGCGCTGATGTCCACCATCATC 11907 28 96.4 32 ................A........... ACGAAGCACGCGCCCAGCGTGCAAAGGCGAAA 11967 28 100.0 32 ............................ AATGCCAAAAACTGGCCCTGCCCTAACACGGG 12027 28 100.0 32 ............................ AAATTCCACCACTGCTGCATCGGTGAATCCCT 12087 28 96.4 32 ........T................... CGGTGATGAGGTAGCGCCGTGTCTGATCCCCC 12147 28 100.0 32 ............................ GCTATGGAGGGAATGCGCAGTCTGATGCGCTG 12207 28 100.0 32 ............................ CGTGCTTGCTCATGGTCTGCGTATGCCATTCC 12267 28 96.4 32 .....T...................... GAACACATCCTCTTCCAAGTTGGCCCCGTACC 12327 28 100.0 32 ............................ ACCACGCATAACGCCGTGCAGCTGCGCTTTGC 12387 28 100.0 32 ............................ TGCCAGCCGCCCTGCACCATCGAATCCGCGTA 12447 28 100.0 32 ............................ TTTGTGATGCGGACGATTGGGGCAGTTATCTG 12507 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 61 28 99.6 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CGTTACATACAGTGATGGCCCTGCCTTGGCTGCAAGGCATGCAAGATCATCTGGCGGTATCGGACATCAACGCGGTGCCCGCTGACGCACAGCATCGACAAGTGACGCGGGTACAGGCCAAGAGCAGCCCGTCGCGCCTGCGCCGCCGGGCGATGCGGCGTCACGGACTGGATGCCGAAGCAGCGTTGCAGCGCATCCCGGATTCGGCCGCCGAACAGTTGCAACTGCCCTTCGTGGTTCTGGGCAGCCGCAGCACAGGGCAACCGTCGTTCCCACTCTTCATCCGGCAGGGCCCACTGTCGTCCACAGCACTACCGGGCACCTTCAATAACTATGGCCTGAGCCAGGACGCCACCATCCCCTGGTTCTGACCCTTTTTTCAGGAGCGGCACGCAGATCCTGAAAATCAACGACTTGGCGGGCCTCCCGGGAAAAGGGGCCCGTTCTTTTTGAGGGGTGCTTTTTCCGTAGCTTCAATGGGTTGAGTGATTTTTTGTCTA # Right flank : AATGCACCACCGCCGACGGGATGGAGCTGCAACTGGGCAGCAACTACCTGGCACATTTCGCGCTCACCGCACGGCTACTGCCCTTGCTGCGCGCCGCCTCGGCACCGCGCGTGGTGAACCTGTCCAGCATTGCCCATCGCTCGGCGCGCATCGACTTCGACGACCTGCAGGGCGAACGCCCCTACCGCGCCTGGAAGGCGTACGGCCAGTCCAAATTGGCGATGCTGATGTTCAGCAGGGAGCTGCAGCGCCGCAGCGATGCGCACGGCTGGGGACTGCGCGCAGTCGCCGCGCATCCGGGCATCGCGCAGACCGCCTTGATCGCCAATGGGCCGGCGGCTGGAGGTCGCCGCACGGCGATCGACCTGCTCACCCGATGGCTGGGTCCGGCCATCAGCCAGAGCGCAGCGGCCGGCGCCCTGCCCACGCTGTATGCGGCAACCGCGCCGCAGGCACAGGCCGGCGGCTACTACGGCCCGGGCGGGCTGTTCGAGCTTAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55987-54218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJITN010000167.1 Xanthomonas codiaei strain X203 Contig_170_90.6961, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================================================================================================================================================================================= ================== 55986 31 100.0 33 ............................... TTGCTCGGCTTGACCGGGATGACCAGACTGATG 55922 31 100.0 33 ............................... TCGTGATCCGCTGACAGCGCTGCTTCGTTTGAA 55858 31 100.0 33 ............................... CACTACAGAGGGGTGCGCAAAAAATTCCACTAC 55794 31 100.0 35 ............................... TTGAGCGTATCGACGGATGCCACGCGGCAACGCGC 55728 31 100.0 34 ............................... CTGTCAGTGGTCAGTGGACCTTTGCACTTCGTGC 55663 31 100.0 36 ............................... CTCCTGCGTCGCAAAAGTTCCTTCGACGCCCTGGAC 55596 31 100.0 34 ............................... TCGAAATTTATCGTTAGCTCGTTCCCGATGACAG 55531 31 100.0 35 ............................... CGGTCGTAATCGACGGGGCAGCGCACCGGGTCCAG 55465 31 100.0 33 ............................... CTAGATATCTATCTGACGATTTACAAGACTCGT 55401 31 100.0 34 ............................... CGATACGCATCGTAGTAGCGCTGCAGCAGCTGGT 55336 31 100.0 34 ............................... TCCCAGACGAGCCAACGGGCGCCGCAAAGATGTC 55271 31 100.0 33 ............................... ATCTCGGCCGACCCGAACAGCATCCGCACGGCC 55207 31 100.0 33 ............................... AATCGCAAGACCGCCGACAACCGTTTCTTCGCG 55143 31 100.0 35 ............................... TCGACCATGATCATCGTCGTGCCGGCGGCAGCGTG 55077 31 100.0 34 ............................... TGGCAGTCACGCATGACCGCGGGCGGCAAGGTTG 55012 31 100.0 34 ............................... AAGGACAAGAAATCGAGCGACTATGTTGCGGCAG 54947 31 100.0 34 ............................... ACGGTCGAGCTTAGCGTATTGCTCTGCCGCCCAC 54882 31 100.0 34 ............................... AACTTCGTCTACGAGCAGTTTCACCAGGTGCCGA 54817 31 100.0 35 ............................... ACTGCAACGCGCCTTGCACGCGTCCTGGCTGATGC 54751 31 100.0 35 ............................... GTTCCAGCCTTCTTCAAAAACCCCATCCCACTGAC 54685 31 96.8 34 ............................C.. TTGCTTGGCACCTTCAACCTGCCCGACAGCATCC 54620 31 96.8 35 ...........G................... ATCACCGAGCACTCGGACGCGAGCAACCAGCGCAC 54554 31 100.0 209 ............................... CTCGCAAGAAAGGACGACTAAGAGCAGCTAGCAAAACTACTGCGCGGCCGCCAGGCGGGCGCGGTCGGTGCTCGGAATCGGCATGTACCACGCGTACACTGCGGTTCCTCCCACTGCGGTTCCTCCCACTGCGGTTCCTCCGCGCCGTCCGCACCCACCTGACGACCGCTCGCTACGTTTTGTTAGCCGCTCTAAGCAAACCCGTTTGA 54314 31 96.8 35 ..............................T TCTGCGTACCGAGCGGGCATGGTGGGTGTGGTCCA 54248 31 83.9 0 ..T...T....G.....C...T......... | ========== ====== ====== ====== =============================== ================================================================================================================================================================================================================= ================== 25 31 99.0 41 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAATGAGACGACTTTGTCGCCATGATGATCTTGGTCAGTTACGACGTCAGTACAAGCTCGCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAGGCTTGCCGCGACCTCGGTCAACGCGTGCAGTTTTCCGTATTCGAAATAGAACTGGAACCAGCGCAGTGGACGCAATTGCGCCAGCGCCTGTGTGATCTGATCGATCCTGCGCTGGATAGCTTGCGCTTCTACCACCTTGGCGCGAAATGGGAAACGCGCATCGAGCACGTTGGGGCAAAGCCCAGTCTGGACCTGAAAGGCCCACTGATCTTCTGACGCGAACCCCAAGCTGCCTGCAGACACCCAGCAGGTTCGCACCACGCGCAAGCCATTGATTATCAATCAAAAAAAGAATGTCTAGCGGACTTGTAGGTTTGCGCTGCCGCTTTTTTTGCGTCTTTTCAACAGGCTCGCGGGATTGCCGACATTTCAGCAATGTCGGCAAGCACTTATGCTAGCCAA # Right flank : TCGCTGCAGGCGCCGTTCCGACACTTGCAAAAAGTCGCGACATCGCGGCCGTGAATCGAAAAATTATGACCAGAGCGCATGTCTGGGCCCCTAACGTCGCGCCCTAACGAATGCGCCGACTGAAACCGGATCAGTGTCAGTGCTAGTTGAGTGCAAGCGGCCAGGACGGCAGCGGGCCGCATGAACGGCGCTGCGCTGCTCAGCAGCGCAGCGCTTGGATCTAAACAGCCGAGGAGCGTGATAAGGAAGACCCCGGCGTGTCAGATTCACCTTGGCGATCCGACGGAAAATGGATCGAATTTCCTTCCTTCGGCGTCGATAAACGTCATAACCAGCCGATGCAGTCGCTTACTTGACCGTAATGGTCTGCGGCGTGCCTGCAGGCTTGCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCGCATGTTGGTGGTTTCGGCGCCGCTGGTGGTCAGCGTGGCGCTCTGCTCGC # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.69, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //