Array 1 48862-48102 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRF01000028.1 Lactobacillus crispatus strain UMNLC15 crispatus10B6S28127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48861 29 100.0 32 ............................. AAACATGTCATGGAATGAACCATTTTGAATGT 48800 29 100.0 32 ............................. TTAAGTGATAAGAAAGATCAAGAAATTGATCA 48739 29 96.6 32 ............................C ACATAACCCGAGCCAAAACGCAAAAGAAAACT 48678 29 100.0 32 ............................. ATCTTTTACAAGGCGGAGATTTGAGCAACACT 48617 29 100.0 32 ............................. GATTGCACCTATGGCAGTGATTGCGGCTGTTG 48556 29 96.6 32 ............................C ATCATTTAGAGCCATGCTTTAAATCCTCCTTT 48495 29 100.0 32 ............................. TGTATCAATGCTAATAAGAACGTTTTACCTGG 48434 29 100.0 32 ............................. TGTCATCACATCTGTAGATTTAAAAAGATTGG 48373 29 96.6 32 ............................C AATGCTCAAACGTTAAATTTGGTTGATAAAGA 48312 29 100.0 32 ............................. AATATCATCAAGCTGGCTAATTACTGATTGTT 48251 29 93.1 32 T...........................C CATCACAAAACATAGTGAAGCAGTTACACCCA 48190 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 48129 28 82.8 0 .............A.........-..TGC | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.1 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAAGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81085-79649 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRF01000028.1 Lactobacillus crispatus strain UMNLC15 crispatus10B6S28127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 81084 29 100.0 32 ............................. GATGTCCGAGTATTAGTGGCTTACATTGATGA 81023 29 96.6 32 ............................C TTATTGCACACTCAAATTATTATTCACAATAG 80962 29 100.0 32 ............................. ATACTGCTGAGAGGACGATTCTAAGACGATTT 80901 29 96.6 32 ............................A TCTACGCTTGGCTTGATAACTTAGGTAATCAG 80840 29 100.0 33 ............................. GTCATTAGCCATCTACAGCATCACCGCCCAACA 80778 29 100.0 32 ............................. AATAAAATCTTGACACCATACCTTAAAATCAA 80717 29 100.0 32 ............................. TCTGCTACCGAACTTAACTCATTTTTGTCAAT 80656 29 100.0 32 ............................. ACATTCTTAATTTGTTGCTCAATATTACTAGT 80595 29 100.0 32 ............................. AAATACTATTTACCAGATGAGTTTGTACTTTT 80534 29 96.6 32 ............................C GTTGATGCTAATACAATCACGATTGTCTCTAA 80473 29 96.6 32 ............................C CATTTTGAATGTTGGCAATATGTGTAGCATTA 80412 29 100.0 32 ............................. AGTAATTTTTAAATAGTCAGCGCTAAAAATTC 80351 29 96.6 32 ............................C CAAGTAACCGAATAAGCGTCCTTGTTATACTT 80290 29 96.6 32 ............................C ACCGCCAGCATTAAACAAGGTACTCATTTTAG 80229 29 100.0 33 ............................. AAACTTACTGGCGGAGATTTTTATTTTTGGAAA 80167 29 100.0 32 ............................. CACTAGAATCAGATATAACTTTAACTGTATTT 80106 29 100.0 32 ............................. TTTCGCTAGTTTTCTAAATAAGAAGCCCGTTA 80045 29 100.0 32 ............................. GTTCGCAATTGCGAATTGCTGATCGGGCTCTT 79984 29 100.0 34 ............................. TAAAAATCATTCATACATTGTGTGACTGCTGAAA 79921 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 79860 29 100.0 32 ............................. GCACTTGGTCCTTGCGCCTTTAAATTGCGACT 79799 29 96.6 31 ............................C ACAAAATCCAGGTACTACTTTAATCCATGGA 79739 29 89.7 32 ...........AC.....A.......... AACTGATTTAGTGGGTGCAGTTATGGATTGAG 79678 29 75.9 0 ...........AC.....A.TC..T.A.. | T [79661] ========== ====== ====== ====== ============================= ================================== ================== 24 29 97.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTCCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGATAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTGGAACGTACAGAAAAATAGCTGATAAACCGCGTCACGACGGCATTTGTTAGTGATTGAAAGTGTACTTTTTTCTTTCTGAACGATTGGAATTAGTACACTTTTTCTATTTGAAGCTGGCGGGTCGAGTGTTCTATGTCCTATTTCGATAGTCGAGTAGACGATCGTTCAGTTTGGCAGGTCGTATTGATTATGGTAGTGAAAGTAGGAATAAAGATTGATATAACAGCATTTACAGAGGGCGCAAAAATCAGTCAATTTAGCGTTGAGAGTTGAGTTAACGAGTATGCTATTAAATTTTGACTGTTTCGATTAAAAAATAGAAAATCTGCACAACGGTAGTTTACTCGACGTATAATATTAATATTCCTGAAGATTATTAAGGCGGTAAACAAGATGGCAAATCGACAAATTGAAATAGAAAATAAAGCGATGAAAGAGATTCTTATCGCAATGCATAATTTGGGAGGTCAGGTTACGAGAAAACAAGTACTACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 84147-83813 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRF01000028.1 Lactobacillus crispatus strain UMNLC15 crispatus10B6S28127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 84146 28 89.3 33 ............TA.........C.... CAGTTTAGGTACCATTTTTTGACGATCAAAATC 84085 28 100.0 34 ............................ TGACAAGGTTGACCAAGCCGTTAAGACCATGCAA 84023 28 100.0 33 ............................ TTAAAATAATTAAGGAGGGAACTCCAAATATCG 83962 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 83901 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 83840 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================== ================== 6 28 91.7 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGCGATGCTGATATATTGTGGATCATTTA # Right flank : AGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //