Array 1 61-1153 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCYB01000039.1 Bifidobacterium pseudocatenulatum strain CA-D29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 61 36 100.0 29 .................................... TCTAATGGATGACACAATTCTCAGCAAAG 126 36 100.0 31 .................................... TCCGGCGAGCAGGATGGATCGTTCGGCTATT 193 36 100.0 30 .................................... GCACGCCACGCTGGTAGTCGCGCCACGATT 259 36 100.0 30 .................................... CTATTACCGGCCGTCACCTCACTTTCCAGT 325 36 100.0 30 .................................... TCCTGTTTCAAGAGTAGTTTCATGCCTTCC 391 36 100.0 31 .................................... TCCATGTGGACGCGCCAATATCCGCCAAGCT 458 36 100.0 30 .................................... CGCCACGCTGTTCGGTGTATCTGGAAAGAA 524 36 100.0 30 .................................... GAAGGTCGGCGGCGCATCCGTCAACGGCCG 590 36 100.0 30 .................................... ATGGGTCATTGTCCCAGCCGGCGATAATGT 656 36 100.0 30 .................................... TCATGCCGGTGCGGACGACCGCGAAGCCCT 722 36 100.0 30 .................................... GCAAAAAGAGCAAAGACTTGTACGGTGAGC 788 36 100.0 30 .................................... ACAGTCCCTCAGCCCTACGGACACGCCTAT 854 36 100.0 30 .................................... CGTCGAGTGGGATACGCCACAACGGCATGT 920 36 100.0 30 .................................... GACAGACGTGAATGTCCGACCTCGGCGCTT 986 36 100.0 30 .................................... CGGCGGAGACAAGGAAACCGTCAACATCGC 1052 36 97.2 30 .......................T............ CAGGAGAAGCAGCATATCGCTGGCACTACT 1118 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 99.8 30 GTTTCAGATGCCTGTCAGATCAAAGACTTAGACCAC # Left flank : GATGCCTGTCAGATCAAAGACTTAGACCACCCGACTTACGTCCACTCGCGGCTATGTCACG # Right flank : CCGGAGGGAAAGTGGATGTGACCTTGACAGAGTTTGTGCTTGAGGATCTTGTGCCAGTCGGCGAACTCAGTAATGGACGCACCGCTACGGTGCTGTCTAAGGCCGACCGTGCGCCGGTCCTCGTCGTCAAACGGAACGCTGTCCTACGTGCTCATGGGTATCAACGATTATCAGAATTTTCTCGACCGTCTTAGGGGCGAAGAGGACGTTATCCATGCGCAATGTGTTTTGTTAAATTGAAGTAGTCCAAAATGGCGTGTCAATCCAGTCCGAACGAGGTGATGACGTTTTCTTGGACTCCCCGACCGGGAGGAGAACCCCCTTATGGCGAAGTACAGCAGGGAGCAGCGTGACAGGGCCGTGGACCTGTACGTCAAATACGAGCGCTGCGCCGCCGACGTGATCCGCGAGCTCGGCTATCCCAGCAAGGGCGCGTTGCTGTCGTGGTACGCGGACCGGCTCGAGGAGGAGCGCACCGGCGTCCCCTCTAGGCGCGGGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAAAGACTTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 57-422 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCYB01000069.1 Bifidobacterium pseudocatenulatum strain CA-D29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57 36 100.0 30 .................................... GTGAGTATCGTTGTCATCCTGTTTGCGATA 123 36 100.0 30 .................................... AAGAGCGTGTATGAGCAGCGTATGGCCGAA 189 36 100.0 30 .................................... AAACGTTGTCGTTGCTTTTGAAGCAGATGG 255 36 100.0 30 .................................... ACTTTCTTTTTGATGTGTTAATTACGAGCG 321 36 100.0 30 .................................... TGAGCTGTTCGAGCTGAGGCCGTGTGAACA 387 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Left flank : TCTTTGATCTGACAGGCATCTGAAACGTGACATAGCCGCGAGTGGACGTAAGTCGGG # Right flank : CCGATAGCCTTGGAGAATCCTGAACGTTCTATGAGAACTGAACATAATCTCCATCGATATACCGACTTCTTCCCTCTGTCAAAAGGACTTTTTTGTCGCAGCATTCCAGGTCCAGAAGCTGCATATGGTGTCTTAATAATTCTCGATGCAAATAAAGTAATTGGCCATTATCACAATATTGAGTTATATGAAGCATCACAAGCATCCTGCCCTCGGCAAGAGCGCCGGCAGTATCAACAACCAGTTGAATTTTATCATAAAGAGAACCCAGAGAACTGGTATCAACACGCGGTTTAGCCATTGCTATCATTGACTTTATATCAGCTTCATCAAGAATACTCAGAGGCAAATTCTCTCTCCATATTTCTTCTTGAATGATCGACTTTATCTCAGTTTGCAACAACAATAATCTACTCAATTCTTCAGGATTAAATCCGTCATTTAACTTCTTAACTGCAGCCTTTTGAAACAAAGCATCATAATCTAGTACTCCTGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //