Array 1 20315-18335 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALY01000020.1 Lactobacillus hamsteri DSM 5661 = JCM 6256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20314 29 100.0 32 ............................. ATCTTCAGCTGGTACGTCTTTAGCAATTTCTG 20253 29 100.0 32 ............................. GTATAGAAACCTAGTTAAATTGTGTAAGGAGG 20192 29 100.0 32 ............................. GGAACTACCCCCTAGTTCCGACAGGAACCGAG 20131 29 100.0 32 ............................. ATTGCGATCAAAATTCAAGTTGGTATCACCCT 20070 29 96.6 32 ............................C ATGCAAAAGAAGCCGGAGTATCAAAACGAGAA 20009 29 100.0 32 ............................. AAGTTGACCAGTAAAACTCAAACTGATCTTAA 19948 29 100.0 32 ............................. GATTTAATGCCTGCAAGTGCAGATCTGGTAAA 19887 29 100.0 32 ............................. GATGCCGTCTAGCCATTCTTGTGCGTCATGCA 19826 29 100.0 32 ............................. GTTTAAAGCCACATTAATGAACTTCACCAAGC 19765 29 100.0 32 ............................. AGTAATGGCACCAGATTGAATAGTTACAAATT 19704 29 100.0 32 ............................. TTCGATTGCCCCAACTGGAGTTTTGACCAGAT 19643 29 100.0 32 ............................. GGCTAATGAATTATGCCTTAGATCATAAAATA 19582 29 100.0 32 ............................. GAAGCTATCGTACTTCAACAGTTAAATTACTG 19521 29 100.0 32 ............................. AATAATTGTATTTGTCATACCATTCTTTTCCT 19460 29 100.0 32 ............................. AGGGAGAAAGAAATGGCTAAAAAGGAAAATAA 19399 29 100.0 32 ............................. ATACTAAGTGAAGTCAATGAGGGAGGTAAAAA 19338 29 100.0 32 ............................. AAGCAGACCACGAAACTTTAGAATCATTGGTT 19277 29 100.0 32 ............................. GTAATGCTATATGAAGACCAAACATTAGATAA 19216 29 100.0 32 ............................. TGACTTCAAATGAAACATACGATGGAGATCTA 19155 29 96.6 32 ............................C GTCTTTCATTTGAGCTTCTTTTGAGCCACTAG 19094 29 100.0 32 ............................. ACTGCTGATTCTCACGAATGCAAACGATATTG 19033 29 100.0 32 ............................. GAAACCTAAAGCCTTGTTTGCTGACTCGGTGG 18972 29 100.0 32 ............................. CGTATGTATCGCCAGTTTCACCAGATAGCCAG 18911 29 96.6 32 ............................C CTGAAGAACTGACACGACTTCTAGTGCCTTCA 18850 29 100.0 32 ............................. CGGTGGTTTTTTACAGAAATTGTTCCAATATA 18789 29 100.0 32 ............................. TATCATTAATAGTAATTGGCGGAATAAATCTG 18728 29 100.0 32 ............................. TTGTTGCAATTCAATATTTCTTTGTTTTAAGT 18667 29 100.0 32 ............................. TTATAAAATACTGTATAAGCGAAAATGATTAA 18606 29 100.0 32 ............................. TATCATTGTCACGATCTAAAATAACGCAGATC 18545 29 96.6 31 ............................C AAATTAGGGGGATCCTCAAGGATGGCGCTAC 18485 29 100.0 32 ............................. TATCGATTTATTTAGCTTCAGACCGCAAAACG 18424 29 93.1 32 ............TG............... ATTGATTAATTGCATCTTTATGACGCTGTGAT 18363 29 72.4 0 ....................AACA.AGAA | ========== ====== ====== ====== ============================= ================================ ================== 33 29 98.5 32 GTATTCTCCACGCATGTGGAGGTGATCCT # Left flank : CCAGCGAAGGATAAGATTATTTCTATTGGAGCTGTAAAAAGATCAAATTCAGAATGGAAAACTTTTTATAAGTTGGTGTCTAGTAATGTAAAAATACCTGATAATATTTGTGATTTAACTGGTATATCTTCTGAAGATATAAGGGAAAAAGGTCATTCATTAGCTTCAGTTTTTAATGAACTAAAATCTTTTGTTGGTAATTCAAGAGTTGTTGGTTACAATTTCTCATTTGATATGAGTTTTTTATTAAATGTTTTCAATGATTTAAATATTCCTAATTTTATTAATAGTCCTAGAGATTTAATGTCTATTGTTAAAAGACATAATCAATTTTTAGATAATTATAGATTGAGTACAGTGCTCAAATATTATAATATTGTTAATGAACACCCGCATAATTCTTTGAGTGATGCTAAGGCGGAATATTTGTTAGCTGAGAAACTGAATAAAAACGGTAGTTTTAAAATTTAAAAAGCTTGGTATTATGGGATTTTTTTAGT # Right flank : GCTGCCTTTATAGATAGCTTCTTTTTTATTCCATGGAAAGTGCTATAATAAAAGCCGTTTTGCAAGTGAGGATAGAAAGAAGCGATTGCCCATGGATAAAGTTCTGAGTCAAGATGAGCTTGATAAGAGAGAAAAAGTTGACCACATCATGTTTCATTTAAGTGAAGCCAAGGATGAAGAAGACAAAAAGCAGCGTATTTTGCAGGCTGGCCAATACCTAAAGGAATTAGGCAGGGTAGGTGAGAATGCAAGCATTGGTGAGATTTTCGATGTGTACAATGCTGATCTTCTGAAGCGGATTCGCAAGGTGATCAAGAAAAGTGAAGAAAAGGCTGCTCGCGCTCCTGAGCCTAACTTACATAGCAAGAAGCTTGTGGTAAAAGGTGCCGATGATACTTTATACTTTGATGAATACGGCAACTGCTTATTGGAAGGCTCACTGGGAATGCGCATGATGGCTGACGAAGGCGTCGAATTTATGTACAGCAATTATCTTCGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGCATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31694-30987 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALY01000020.1 Lactobacillus hamsteri DSM 5661 = JCM 6256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 31693 29 100.0 32 ............................. GCACTTGCAATATTTTCAATAGTACCAGGGCT 31632 29 96.6 32 ............................A ACTTCGTATCTCTACGAATTGCGCTAGATGTC 31571 29 96.6 38 ............................C AAGTGCAAGCGCAAGCTTAACTCAATCAACGTGACGAA 31504 29 96.6 32 ............................A TGCCTGCTTGATAGTACAAGTCATAAATTTTG 31443 29 100.0 32 ............................. AATTTGGCTTTTAAACAATGGTTTGAACATGT 31382 29 96.6 32 ............................A GGTAATATGAGTTTTAATGGAGTTTCTATTGA 31321 29 96.6 32 ............................C TGATCCATCTTTGTGATAATCAATCCAACTTG 31260 29 100.0 32 ............................. TGTGGGTATGAAGTTCTGTCATTCCATGAAAA 31199 29 100.0 32 ............................. AATGTTGGTGGTGGCAGACAAAGTAGCACTAA 31138 29 93.1 32 ............C.A.............. CTTTCAAAATCACCAAACTGGTAAGTAAGCTT 31077 29 89.7 32 ............C.A.............C GCCACCGAAGCTTATAAAAAGGCTCATTCAAC 31016 29 82.8 0 ............C........C.T..TT. | T [30990] ========== ====== ====== ====== ============================= ====================================== ================== 12 29 95.7 33 GTATTCTCCACGGATGTGGAGGTGATCCT # Left flank : TGTAATCTTGTGCCATAAAAATAGCGTCAGCAATATCTTTACCTTCAGTCGTTCCATCTAAGTCAGGAATATTTACTAAGTATGGGTATTTAGCATCCTCATTGTTTTTACTAATAATTATAGGAAAAACCACGGTCTTATCAATTGATGTCATCATAAAATTCCTCCTGTATATCATTAAGAATAACATATTATTTTATTAAAAGAGATGAAAAGAAACAGAACCTAGCAACTGATAAGACTTAGTGAGGATAAACGCCCAATGCCCCGGACTGAAGTTTATAATTTCTAAAATAGCCGATATGTTGACCGAAATTAAAGAAAAATTCTCTATCTTTTTATTAATATTGATTTTGGTTTCGGCTGAGGTAATCTTTGAATCATTGTTGGTATTATATTTTTAATTATATGTAAAATTTACTCTATATTTTTTTGATGAAACTGAATGAAAAAGTGATTTTCGTAAAGTACGAACCTTGGTATAATAGGATTTGTTAAGT # Right flank : TATATATAGTTTTCTACATTAAAAAAGGAATTATTATGTACAATTTATCAGAAAAAGCATTAAATCTTTGGGGCAAAAAGAATATTAATGATGATCATGAAGAACTATGGTTGCCCCTAATCGTTCACCTTATCGATACCAAAAACGTAATCAATTGGCTTTATAATCACTGGCTAGATCAAGGACAACGCAATATCTTATGTCAAAATTTTGAAAGTGAAGAAGAAGTTCAAAACTTAGTTAAATTCGTGGGTTATATTCATGATATTGGCAAGGCTACTCCTGCTTTTCAAACAAAAAGGTCTTATATTCATGATGAAAATCTTGATACGGATTTGTTGGAAAGATTAATTAGAGCTGGTTTTAATAATCTAGACCATTTTGCTTCAGTAAGTGCCAAAGAATCGCCTCATAATATAGCTGGTGAAGTGATACTAGAAAAGCGTGGCCTTAATAAGTGTATTGGCGCAATTATTGGTGGACACCATGGTAAGCCGGTG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGGATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //