Array 1 7717-9267 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZR01000028.1 Campylobacter concisus strain AAUH-10HCdes7 1104001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 7717 30 100.0 37 .............................. ACATAACTGGTTCTGTTGATTATCATCCCAGCAAAGA 7784 30 100.0 35 .............................. CATACCACGCCGAAAGCTCATCGAAATCCTGCGTT 7849 30 100.0 34 .............................. ACAAGCTCGTGAGATTTTGGCTCGAAATAAAAAT 7913 30 100.0 37 .............................. ATGAGTAGATAAAATGCTTAGTTTAATCATTGGTCCG 7980 30 100.0 39 .............................. AATGCTTTTTGGTTTAGCAATTTTAAGAGTTGTGAGGAT 8049 30 100.0 38 .............................. GCGTTTGCAATATTGCCGTTGTTGTTTTCTAGCATATC 8117 30 100.0 37 .............................. AAAGATCATAAGCTTAGCTTTAAAGTAGTGCTTATGA 8184 30 96.7 36 ..................A........... CGCCCCTAAAGCTACCAAGCCTAAAAGCCCAAAACA 8250 30 100.0 37 .............................. TATAGGGGCTATCTTATTTTTGAGCTTTGTAGTTGGC 8317 30 100.0 34 .............................. TCTATTGCTTTGTCGATTACGGCGCTAACCCAAG 8381 30 100.0 37 .............................. CTTGGAAAGAAAGCGACGAAAAGCAAACTTGGTCTAG 8448 30 100.0 36 .............................. AACTGGTGAAGTTGGCCTATAAGCTCTCCACTTCCG 8514 30 96.7 35 .........................A.... GCGTCACTTTGCAAAAGTCACTAACCGCTCCGCCG 8579 30 100.0 36 .............................. TTTATCGCCGTTGAAACAAAATCCCCTTATTTTGTA 8645 30 100.0 36 .............................. TCAACAGTCTCAGGCGACCAACAACCAACTGGAAAA 8711 30 100.0 34 .............................. GTAGATTGATTGATTGTATTGTTTGGCTGCTAAA 8775 30 100.0 36 .............................. AAAGCGTGGCAGCACCCTCTTTTCCATAACCAATAG 8841 30 100.0 34 .............................. ATTCGTCAAAAGCAGAATACAAAGATCGACGGCT 8905 30 100.0 37 .............................. GTGGTTTTGTTTCTTGGCGTGGCACCGAGTGGATAAA 8972 30 100.0 36 .............................. CCTATACCACTACCAGCAGTCCAAATGATAAGCTCT 9038 30 100.0 38 .............................. CACACTCAAGATACGTTTAACAACAAAGACTATAACGA 9106 30 100.0 34 .............................. GTTGAGCTTGTAGGTAAATTTTACAAGGCTAACT 9170 30 100.0 38 .............................. GAGATAAAGCTTGCGACACGACAATAAGACTTTTTTGC 9238 30 96.7 0 ...........G.................. | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 99.6 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGTATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAAATTATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCCTATGAAGGCTTTGGGTCGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTGCACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CATATGTTTTCAACTTAATTTTTAGTTTGACATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGGTTTGAAACTACGTCTTTGCGATCAACTATGTAAGGTATGATAGCTGCGTGGCGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTTAAAAGTGAAGTATCCTTGTAATCTATAAAATCAATTTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTTGTTGCTTTTTATTTTGTGGCTGTGCTTGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 6511-6846 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZR01000021.1 Campylobacter concisus strain AAUH-10HCdes7 1103994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 6511 29 100.0 46 ............................. GTTATTGTGTTTTTTAGTTTTATGATGCCTGCTTTTGTATTTAAAC 6586 29 96.6 48 ........................A.... CAGCTTACGGCATATTGCTTTTCACCGATGACTATTCTGTATTTAAAC 6663 29 100.0 43 ............................. TTTTCGTAGTTAGTCAAAACTTCTATGTCTGCATAATTTAAAC 6735 29 100.0 52 ............................. CCACTTTTTCCGTATGTGTATCCGATCACTTCAAAAAGCGCGGTATTTAAAC 6816 29 86.2 0 ............C..T.........CG.. | A,A [6839,6841] ========== ====== ====== ====== ============================= ==================================================== ================== 5 29 96.6 48 AAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TGCATACCCAAAGGCTCCTCGCACCTGCGAGCCAATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATACCTCATCTAAACTCCTTATCTTCACATAGTCTAAAACCACGCCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTAGTAGTTTTATCAGCATGCCAAGACTATCTCTTGTCGCCCTTATATCGCTAGAAAAGGTCAAGATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTTGTATATTTTGTGCGTACCTTCACCACTTTTGATTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTTGTGATTTTAAAGATATTTAAAATAAGTTCTTTTACTTATCATTGTT # Right flank : CCCATACCACATTTAAAAAGGTAAATTCAAAATGTTTACTAAAAATCTAGAACACATATTTACAAAAGCTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTAGGTTTAGACGAGATCTCGTATGCTGATTTTAAGAAGAACTTTGACGAAAACGCAGACAATCTCATAAGCTCATTATTAAATGGCACCTACACGCCAGAACCGCTAAGAAAGATCAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAAAGTCCTATACTCAGAGCTTAGTCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCACACAAATCCACCTACAAAGCCATAAACAGAGCCAGCAGTTTCATAAACGAAAATGACTGCTGGATACTAAAGGCCGATGTAAAAGACTTTTTCGAGTCGGTAAACCACTCCAAGCTACTAAAAATTTTGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 9831-11006 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZR01000021.1 Campylobacter concisus strain AAUH-10HCdes7 1103994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 9831 37 94.6 37 ......................TT............. TTGTTTTGTTTCTCACCTTTAATAACTACTGAATAGT 9905 37 94.6 35 ......................TT............. GGGATGTAGTTTAGATTCCTAGCGATTTTATCGCC 9977 37 94.6 42 ......................TT............. TTATCTCGACTTCAAGTAATTCAGCTGTTTCTACAGCAACAT 10056 37 94.6 39 ......................TT............. TTTCTTCGCAAGTATTAGAAATATGATTGATCCTACGAT 10132 37 94.6 36 ......................TT............. GATCTTTAATAAATTGTAACATGTTGAATCCTTTAT 10205 37 100.0 37 ..................................... GTACTAAGAGATCATATAATCCCCATCTAACCTTATT 10279 37 97.3 40 ......................T.............. CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 10356 37 100.0 40 ..................................... CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 10433 37 100.0 39 ..................................... TGCTTTTGCCATTAGTCTTTCTTTTAGAGATGCCATTGT 10509 37 100.0 40 ..................................... AGAGCTATATAGACACCACATCTATCATCACCACCTAAGC 10586 37 100.0 39 ..................................... CACTTGCAAAACCACAAGAAATAAGAGAAAGAATAATTA 10662 37 97.3 35 ...................A................. GCCATAGTGTTCTCCTCTGAATAAGATTTAATTTC 10734 37 94.6 43 ....TT............................... GTTATACATATAGCTTCTCTTATTGTAAACTGTAGCTTAGGAT 10814 37 94.6 38 ....TT............................... GTGAATTCGTCTTTGTCTAAGTACCAGAATGGTTTTTT 10889 37 94.6 42 ....................C..T............. ACTCCAGCGATGAACGCTGCAACTATCTTAGCTTAGCGAGAA 10968 37 94.6 0 ...................................TT | T,A [10979,11001] ========== ====== ====== ====== ===================================== =========================================== ================== 16 37 96.6 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGTGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGAGTTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTGGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTGATTTTACGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTGGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTACATGTATATGTAAAATATTAGAAATAAAGGATATGGCAATAAGAGATCATAGAAGTAATAGTAAAAGTAGTGAATGTAAAAAAACAATCTTATAGTAAGTAAAATGTAAAAAGTATGATGATGAAAGTAAAATCAAAAATACAATGATAGTAACGGCAGTTAAAATAGAAATAAGCTTTATAATGTCGCTGTATATGGAGATATTATCTCTATAATCTATAATAAGTCTTTATTGCTCATCACATATCTCCTCATAAATTTTTGAGCCTATCTTATATAGTGTATATGCTGATATAGCAATTTTAGTTATAGCCTCTATGGTTGGTATTATTAAAATTGGCATGTTATCTACCTTTTTTGTCTGTTAAAACGTCGATAGCCTTTTTGGCAACATAAAACTCAATAGCAGCTTTAGCGAGCGCCTCTAAAATTAAAACAAATGGCATATTTAACCCTCCCATTTTTGATTTTTTACATATTGGCAAGTGACTTGCTAC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : ATTTAAACAAATTTGACCCGATTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //