Array 1 8279-13614 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGIH01000029.1 Syntrophomonas zehnderi OL-4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 8279 31 100.0 35 ............................... TTAAAAGTGTATGAAGAAAGTAATGCAATTGTTAG 8345 31 100.0 36 ............................... AATTATGTGGCCTTACGGGTCACCAACTCAGCCGCG 8412 31 100.0 36 ............................... AGGAAGCTGATCTATTTAATTCAGCTTCCCAAAGAG 8479 31 100.0 35 ............................... AAAAAATTGCTGATATTGTAACAGCCAAAAAGAAG 8545 31 100.0 38 ............................... GGCCCAAAAAGTTCAAGAAACAGAACCACAGGTTGCGG 8614 31 100.0 36 ............................... CCGGGCTCTCAAAGCCTGATCATGCGGGTTGTACTG 8681 31 100.0 36 ............................... ACTTAAAAGTTTTGCCATTGTTCTTTTTCCTCCCTG 8748 31 100.0 35 ............................... CATGTGACCATGAAGAACTTGAAGGTAAAGAATGG 8814 31 100.0 36 ............................... TTTGTGCTTCGTATAAAGCTCTACCTGGTAATTAGG 8881 31 100.0 38 ............................... CAAAAGATGAACCAATCGATAGTGTGGGGCCTTGGCAG 8950 31 100.0 36 ............................... ATCCAAGAAGGCTGTGTCGCACTCGACATAGCCAAG 9017 31 100.0 38 ............................... AGAAAATGAAGGATGAATATGGGATCATTGGTTACTGG 9086 31 100.0 37 ............................... TGAGTAGTTGGAACAGTGTCGCCTCATCCACGTCTTG 9154 31 100.0 35 ............................... AGCGATCCATGTTACCTGCACGCCTGCATAAACGG 9220 31 100.0 37 ............................... GGTTTCTAAAGCATCTAAATCAATATCGGTTGCATCG 9288 31 100.0 35 ............................... CATGTCCTCCACCCATGCAGGCGAGTTCCAACTGG 9354 31 100.0 38 ............................... AATTGCTGGATGTCTTGCAGCTATACATACACTTAAAG 9423 31 100.0 37 ............................... GGTTGTCAAGAATGACAATTGAAGACGGAATGCCTTG 9491 31 100.0 36 ............................... TATAGTTTGGCAGTTGGAAAAATAGTTAATCTTTGG 9558 31 100.0 35 ............................... TTATCTGTCATTAACATCTTATTACCCCTTCCTTG 9624 31 100.0 35 ............................... GTGATTATCTGTCAAAAATGAATAACAGAACTTTG 9690 31 100.0 39 ............................... AGTTTGTGTGTATTTATCGCTGTTGTTAATAGCTTGATG 9760 31 100.0 38 ............................... TTCAGGACGCTGGATGGGATGTAATGCTGACCAGGGGG 9829 31 100.0 35 ............................... TACAGAGTGCTATTAAAAAACCAATAACAATAACG 9895 31 100.0 36 ............................... TGAATCTATTCCATGTTGATACGAGTCTAATAAATG 9962 31 100.0 35 ............................... GAAGAAGTTGAGGATGGGAGTAAAGGAGTTATTAG 10028 31 100.0 35 ............................... AGGGAGCGGGGCAGGAAAGGGAGGAATTGAGATGG 10094 31 100.0 35 ............................... TTTCGACAAAAGCCTGTAACCCGCGTGGTTATGGG 10160 31 100.0 37 ............................... CCCTCAGTCCACCGCAAGATCGGCGGGCTGATAGAGG 10228 31 100.0 36 ............................... CGGTTATATCGCGCATTAGTCCTCGCTCCCTTCCAG 10295 31 100.0 35 ............................... AGCGTGTTAAAGCATTAAAGCGTTTTGACTGGCTG 10361 31 100.0 35 ............................... TGTGTATAAAGGCAGGTGGAAAAGGTGAAAAAGGG 10427 31 100.0 34 ............................... TCTGGGCTTAGCCTAAACCCGTAGTCTCTATACG 10492 31 100.0 37 ............................... TTGAAAAACTGCATACCCGTAAACCGTAAGTATCGGG 10560 31 100.0 38 ............................... AGTTTCCTCCGGGTACACCGGGGGATGAGGTATCGCAG 10629 31 100.0 37 ............................... ATAGGTCCTTCGATAAATGCCTGCCCCTTCTCCCTCG 10697 31 100.0 37 ............................... TCCCCGCTGGACTTGCACCAGCCACCTTTCGGCGGGG 10765 31 100.0 36 ............................... CTGTATGCCTTGCTGACCGTGGCTTGGATACAGCCG 10832 31 100.0 37 ............................... TTGTAAAACACGTTGCAGGCTTTCGGCCAAAATGTGG 10900 31 100.0 35 ............................... AGTTTCCTCCGGGTACACCGGGGGATGAGGTATCG 10966 31 100.0 35 ............................... GCATGGATAGCGTGGTAGAAAAAGCGATAATATCG 11032 31 100.0 38 ............................... TATTTAAGGGATGAAAAGGACGAAGAAAGAGCCGGCCG 11101 31 100.0 35 ............................... TGCGTCTTAAGAAATAATGAAAAAAGATAGTAAAG 11167 31 100.0 36 ............................... GACAATCAGTGTCGAAAGGACAGACCAAGGGCGAAG 11234 31 100.0 36 ............................... CCGAATCTCGTCTTGTTCCATAAACGGGAGCCGTTG 11301 31 100.0 37 ............................... AGCTTGCCTCCCGCTGCTTGTGCTGGCTTGTAGCTCG 11369 31 100.0 35 ............................... TGAGGGTCGCACTGAGCGCAAACCGCGCGGCGAAG 11435 31 100.0 36 ............................... AAGCGGGTATAAAGACGCTTGCCAAGTATGCAACCG 11502 31 100.0 36 ............................... TCATCCTCCTTATACAAAGTCATCAAATACTATAGG 11569 31 100.0 36 ............................... CCATCAGTCCGTCGGTGTGATCGGCGGGCTGATAGG 11636 31 100.0 36 ............................... AAAATCACCAATGAGCAGTTAATCCAGATAGCCGCG 11703 31 100.0 36 ............................... TTGCGTGGGAGGCGTGGCAAGAACAGTAAGCTAGCG 11770 31 100.0 35 ............................... AGCAAAATTTTATCAGAATAAAACACTGTTTTATG 11836 31 100.0 37 ............................... TTTTTTGAAGGAATTAAAATGATAGCGCCCCACCCAG 11904 31 100.0 36 ............................... TACGTCAGTGCCTGCTTTTGTTTTCCAGCCATTTTG 11971 31 100.0 36 ............................... TAACAGGGTATTTCTTTATTACCTTTTTGTACCCTG 12038 31 100.0 36 ............................... CAGTAAAGGAGACTGAATAGCATGGCAGAAGAAACG 12105 31 100.0 37 ............................... CCCTTTGCACAAAGTAGTCATCAACGAAGTGCAGATG 12173 31 100.0 36 ............................... GGTTAGATGGTAACCACATGACTTGTACTCATAACG 12240 31 100.0 36 ............................... AAAGAACATGCGTTTGTAGTATCATATCCCACCCCG 12307 31 100.0 36 ............................... TAGCATGTGACGCGGCATAGTATGCTCCCCCTTCCG 12374 31 100.0 36 ............................... TTGGTTATAGTGGTCATCAATCATGTTAAGGGAATG 12441 31 100.0 36 ............................... TTTTAACCACACTGTTTTTTTTGGACTTCAATCAAG 12508 31 100.0 37 ............................... AGTAAATCCGTATTCGCACATTCTGGGGAACCAGTGG 12576 31 100.0 38 ............................... CTAAACAATCAAGCACCGTTAAGCGCTGCCTTACCTGG 12645 31 100.0 36 ............................... TCAGTTCCCCGATCTGGCCGCAAGCGGTAGAAATAG 12712 31 100.0 37 ............................... AAGGTGGAGCCTCTCTTTGAGGAACGCCTTGATCTTG 12780 31 100.0 37 ............................... GGTTGTGCCGCCGCCGATTTTGACCTTCTTTGCGGGG 12848 31 100.0 35 ............................... CCGAACCGGTACCGACGGTATACGCAGCTGATTTG 12914 31 100.0 35 ............................... CTGTAGTTCCTCTGCGAGTGGTATGTCGTAAATCG 12980 31 100.0 35 ............................... AAGGGTATCTAGTGTTCGTAATTCTTGCGTTAGCG 13046 31 100.0 36 ............................... GTATTGTAATCCTGCCAGTATTTCGCCTGGCTTTCG 13113 31 100.0 37 ............................... GGTCAGTTTGGCTTTTACCTCGTCCCAATTTTTATAG 13181 31 100.0 35 ............................... CCCGTAATTTTTCTAGCGCCCCCGGCGGTATAACG 13247 31 96.8 35 .T............................. TATTATTTTAGCCAACGTTATAACTTTTAAGTTTG 13313 31 100.0 36 ............................... TTGTTGCTCCATTTCCAGTATTGCGCTTGCATTTGG 13380 31 100.0 37 ............................... GATAGATAGGAGTTTTTTTATCCCCTCCTGCTGATCG 13448 31 100.0 37 ............................... GTATCTAACCAAGGATGATGCCAAAAAGGCTTAATTG 13516 31 100.0 37 ............................... GGGAGGTGGTGTAATGGGTAAAATAATAAGACCGCCG 13584 31 71.0 0 .........AC..AC........GG..CG.T | ========== ====== ====== ====== =============================== ======================================= ================== 80 31 99.6 36 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : GGATGCTTATCCGGCGTTCATTTGGAAGTAGAGGTGAGTAATCATGATGGTACTAATTACTTATGATGTTAATACTACTGACAAAGAAGGGCAGAAACGTTTGCGAAGGGTAGCCAAAAAGTGCGTTGATTACGGACAAAGGGTGCAAAATTCAGTTTTCGAATGTTTATTAGAACCAGCTCAATTTGTTTTACTAAAGAATGAATTGGAATCAATAATTGATACAGATAAAGATAGCTTAAGGTACTATATGCTCGGGGCTAACTGGAAAAGAAGGGTGGAGCATGTGGGAGCAAAAGAAACCTATGATCCGGAAGGCACCATGGTACTTTAGCGCGAACCGGAAGCGATTGGAAAAATGCTGGGCAGTTCGCGATAGCTAATTTTCGGGAGATAATTAATATTTTATAATTTGCTGGAGGTTAAAATCTAGGAGAAAAAGTTCTGCCGCGGATATAATGCTAAAAAACATTATTATATCGGAGTTAGAAAAGTTAGTG # Right flank : TATTTTACCTTCTAAAACCCTGTGCCCCAATAGGCTGACTGCAGGATATTCAGAACGTCTTCGTAGGTGAGTATTTTAAATGAGCCTAGGCTTCCTTTGCTGGTTACATCGGCTGCAATTTCTGTGAGTTGATCTGTGTTGAGACCGATATCTTTGAAAGTGGCGGGTATGCCGAGTGATCTGAAAAAATTAGCGGTTTGGGCGATTCCCTCTAAGGCTGCCTGCATATCATCCGTTTCCGTAATGTCCCAGACATTTCTGGCATATGTGGCCATTTTGGCCGCGGTTTGTTCATTCAGAACCTGCTTCATCCAGTAAGGTGTTAAAATGGCTAGACCTAGTCCATGGGTGATATCATAAAGGGCCGAGAGTTTATGTTCTATATCATGGGTGGCCCAGTCGGTTATTTTGCCGGTGCTTAATAGTCCGTTTAATGCCAGGCTGCTTGTCCACATAAGGTTGGATCTGGCTTCGTAATTGTCCGGTTCAGCTATGGCCAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 949-259 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGIH01000003.1 Syntrophomonas zehnderi OL-4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ================================================================== ================== 948 39 87.2 36 ........................C.AA.AG........ TTTCCAGTATTGGTGATAGCCCCACCAAAACTATAG 873 38 84.6 42 ..A-....A..T..........T...T............ CCTCCACCACTATTGTCGATGGCACCACCACTTTTACTATTC A [869] 792 39 97.4 42 ..A.................................... CCTGCCCCATGATTATTTTCGATGGCACCACCATAACGAGTT 711 39 100.0 39 ....................................... TCTGCACCATTATCATTGTCGATGGCACCACCACTGTCC 633 39 92.3 36 ......................T...AA........... CCCGCACTGTTATAATTGTAGATGGTACCAAAACCT 558 39 100.0 39 ....................................... CTTTTTCCAAGATCATTGTAGATCGCACTACCCCGAGTT 480 39 94.9 39 ......................T...T............ CTTGCACTCTTATTGTAGATGGCACCACCACCATGAATC 402 39 92.3 66 .A.........................T....T...... ATTCCACTTTTAAACTCATTGTAGATGGCACCACCACCATAACGAGCATAAGCTCCATCATAAGTT 297 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ================================================================== ================== 9 39 94.3 42 GCGGTGTTGTTGGTGAATGTACAGTTCGTCACAGTTAAA # Left flank : TTATTGGTGTTGAAACTGTTTGATTATCAACTGTGGCTGTGATATTTCCTGAACCGATGGTTGTTGTTGTGAAAACTGAGGTTGCACTACCATTTACCAATACAGTAGATACTGGTTCTAAGTTTCCCATGTCACTTGCGAAATCCACAACTATTCCATCTGGTACATGGCCGTTTACTGGATCATGATAAGTTCCAGTATTGTCATGTAGTAAATCAACACTAACAGTTGAATTACCGCCATAGAAGATATTATCAGGGTTCGTTGTGATATTCAGAACTAACCAGGAACTTACGTCAACACTACCGTGAACATCATTAGACACATAAATTGATGGATCAAGGTTTGAACCCCACCAGTTAAACCTAGCATCTATAATACCATAGTTACAGTGGATCTGACTGTTACTTGCATTGTTTCCAACAATCCTGTTGAAATGAACAACAACAACCTTAGAAGCGTCCGGCTGATAACTCCAAATAACACTACCAGTACTAGTT # Right flank : ATTTCCACCATTGTAGATGGCACCACCCATCTCTGAGGTGCTGTTTGTGAGTGTTAGGTTATTTATGTTGGCTGTTATTCCTGATAGTATGTGGAATATGCTGTTTCCGCTTTGTTGTCCATTGATTATTGTGTTTTCCTGGTTTTCGCCGGTGATTGTCATGTCTTTGTTTATGGTTATTCCTGATTCGTTGTAGGTTCCTGGTGCTATGTAGATTGTTCCGTTTGTTGTGACTGTGCCTGTGGCATTTGTTATGGTC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.25, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGTGTTGTTGGTGAATGTACAGTTCGTCACAGTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.41%AT] # Reference repeat match prediction: R [matched GCGGTGTTGTTGGTGAATGTACAGTTCGTCACAGTTAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //