Array 1 48001-49350 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPHT01000022.1 Klebsiella oxytoca strain K3678 NODE_22_length_116213_cov_29.0817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48001 28 100.0 32 ............................ AAAAACTGAGCGGCCGCAGAATGAAGTTGTAA 48061 28 100.0 32 ............................ TCATTTGGCGACGTGCCTTGTGCGCGCATTTC 48121 28 100.0 32 ............................ GTCAAAAGAATGATTTCCTGCACAGGGTTCAA 48181 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 48241 28 100.0 32 ............................ GGAAGACTGGCCTAATTATGAGGTGCGTTATC 48301 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 48361 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 48421 28 100.0 32 ............................ GTAACCGCATGTCGGCTTTTGCTGCATGGTGG 48481 28 100.0 32 ............................ TTCGGCCATACCGCGATACGACGCTTAACCAG 48541 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 48602 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 48662 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 48722 28 100.0 32 ............................ GGCTGCGTCGGGACCCACCACATCGCCAGCAG 48782 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 48842 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 48902 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 48962 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 49023 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 49083 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 49143 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 49203 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 49263 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 49323 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCATCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGTTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGATAAAGAGAAAAATGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACCGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAATGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGAAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGGAACGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCAGTTAGCCAGGCTGCAATGCGTGAGTTCGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 57779-58767 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPHT01000022.1 Klebsiella oxytoca strain K3678 NODE_22_length_116213_cov_29.0817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57779 28 100.0 32 ............................ TTATCCACGGCTTCCAGCAACTCGGGGTTTTC 57839 28 100.0 32 ............................ AAATGGGCCGCCAACGAAAGCAAGAGCACCTC 57899 28 100.0 32 ............................ AATACTGGAAGGATATTAAGCGTGGCGGTATT 57959 28 100.0 32 ............................ ATATCCGCCGCGCCGGATAAGCCTTGCTGCCC 58019 28 100.0 32 ............................ ATCGTGTCTGGGAGAATGTCTTTGCTCATAAT 58079 28 100.0 32 ............................ TGAAATTGATAGAAGGTTCTGAGCAAACCTGC 58139 28 100.0 32 ............................ ACGATGTGAACGCTATCGCTATGCACACCACT 58199 28 100.0 32 ............................ TCGGTGCGCAGTCCAGATATTGCGATATACAC 58259 28 100.0 32 ............................ ATTAAAACCAATAGTCTGACGATCCAGCGCCA 58319 28 96.4 32 ..........C................. AGATAGCACCGCCTGGGCGCATATCTTTCGCC 58379 28 100.0 32 ............................ CGATGCCTCCGATAAGAGAAAAGGCGTTCTCT 58439 28 100.0 32 ............................ CTGGAAACATAGCAAATGGCACCGTGTTACAA 58499 28 100.0 32 ............................ TCAAAAAGTACGGACGGTGGACGGTGAGCGAA 58559 28 100.0 32 ............................ ATTCGCGTTAACTACGAAGACAGTAACGGTAA 58619 28 100.0 32 ............................ AGATAGCCACCGCCGAGTAAGACGATTGCCCC 58679 28 100.0 33 ............................ CTGACCGGTATCAATTACGCGCAAATCCATTTG 58740 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACACAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTATATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTATAGTGGTTAGGCTTCA # Right flank : ATCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //