Array 1 27447-29592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHJN010000017.1 Streptococcus salivarius isolate AMBR055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 27447 35 100.0 36 ................................... TTTACGATAGCAAAACGACCAGCATAACAATTTTCT T [27459] 27519 35 100.0 40 ................................... TCATTACGACCACAGTAATTAAAGAGTTGTACCAAAGCAT T [27531] 27595 35 100.0 34 ................................... GTCTTACTCATTTTGTTTACCTCTTTTATTCTTT T [27607] 27665 35 100.0 37 ................................... TAAGACTTTCCTCTATCGTCCAATTATAATCACTTGA T [27677] 27738 35 85.7 47 ............C.....T.C..A..........G GGTATAGTGCTAGGGGTAGGCGCCTCGCTTGTACTTAGTGAAGTACG C [27750] 27821 35 97.1 38 ...............................T... TGAGTTCCAATTGGTAAAGATAATTTTGGAATACTAAT T [27833] 27895 35 94.3 36 .............C.................T... ACAGTAGCAACCACCTTATAGTTAGTTACCCCAAAG T [27907] 27967 35 91.4 36 .............CG................T... ACTGCTCTTTTTTGCCATGCTTTTAATTGACTTTTG C [27980] 28039 34 85.7 36 ....C..T.....C.......T......-...... CCTTTGAGCTATCTTTGTAGCTCCCTTTCTTTATCT T [28051] 28110 35 97.1 37 .............C..................... TTAAAACATCACGACTTTTCGTGATTCCCAAAGTTCA T [28122] 28183 35 100.0 36 ................................... TTAGATGGTTCTGGTTCTTCTGGTTTAGATGGTTCG T [28195] 28255 35 91.4 38 .......C.....A................A.... TCAGTCAACCAAACTTTAGTGTATTTTTCTAGCATTTA T [28269] 28329 35 91.4 40 .........T..........CA............. AACTCACGTACTTCTGGAATGCCAGGGATACCACCTTCAA C [28342] 28405 35 94.3 38 ....................G.............T TCCCATCAAACTAGATAGCTCCAGCGATCTTACAGTTT T [28417] 28479 35 91.4 38 .............A......CA............. CGGCGAGCCGAGGCTACGGATTGAAGATGGTAACGATT T [28493] 28553 35 91.4 36 .........T....T...................T TCACGAGGCTTGAATTGCCAAGCATCATCAGACCAT G [28566] 28625 35 94.3 37 .............A......C.............. TTTTTCACATGTGCTTTTACTGTTCTAACCGTTTTTT 28697 35 97.1 40 .............A..................... TGCTGAATTGGTGTCACTGTGATTTTTCCTGCAACTTGGG 28772 35 94.3 36 ..............G.....C.............. TCATTACATTTTTCCTCTCCAGTATCTTTTTGTTCA C [28785] 28844 35 91.4 34 ...G.........C.................T... ACAAGATAGCCTTTCTTGATCCAGTTTGAGAAAT T [28856] 28914 35 100.0 33 ................................... TCAACGTCATCTTTAGTAGTGTTTTTAACTTTG G [28927] 28983 35 94.3 34 .......T.....C..................... AGTGGGTGACGATAACCAAAGCTTGTTGGTTCTT T [28995] 29053 35 94.3 35 ....................C..........G... AGTATTATTTTTTTGTCTTCCATTGTTGTTCTTTC G [29066] 29124 35 91.4 38 .......C.....C.................T... CTGTTGGCGCAACGCCCCAGAAATTTCAATCCTAGCAT C [29137] 29198 35 97.1 36 .............A..................... TTGATTACCTTACGTGTGAAATCGTTGATGAAGTTA T [29212] 29270 35 91.4 35 .......C......................AT... TTTCCATGAAATGGATATAGTTAAAATTATCCAGA C [29284] 29342 35 82.9 35 ...T...G.T....C.....T...T.......... TCGTTGACTTATGATCTTATCTCGATTCATTTCCA T [29357] 29414 35 94.3 35 ..C............................T... ACAAGGCTTTCTGTTTTTAAGTCATTGCTTTTCTC C [29427] 29485 35 94.3 36 ........A............A............. TATATACGCTGGAGCAGATAATACATAATATGCTTG G [29498] 29557 35 80.0 0 .....C.......................TTTTTT | A [29570] ========== ====== ====== ====== =================================== =============================================== ================== 30 35 93.6 37 GATATAAACCTATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTCGACCCTAGTCTTTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAATCTCAGCGAAGAAGAACGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCCAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGACTATCAGTCTCTCCTTAAGGATATCGAGAGCTTCTACAAGGCTGATGAAGAAGACAGCATAATCGTATATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAAATAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGCAAACATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTATATCTTGTGTCTCTAGCAACTGTCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAATAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCAACCAAGATAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTGCATCTGCTTACAGATGACCTCGAGGCAAAGGCTTTTATGACCTTATTACAGATTAAAGAGGTATCCTTAAACGACTTACCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGTGCTGATAAACTGTTAGAGATTTTCAATAGTGAGGACAATCAAACCTATTTTTCAATCATTTTTGAG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [27-44] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //