Array 1 52-439 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBW01000055.1 Pseudomonas aeruginosa strain Pa1354 K29_S96_R1__paired__contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 112 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 172 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 232 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 292 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 352 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 412 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGTATAGGCAGCTAAGAAAGCGAAGAAAAAGCCCGCCAGATAGGCCAGGAAG # Right flank : AGGAACGTCCCGTCTCAGTTTGGAACGCCCACGTTCACTGCCGTATAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGTATAGGCAGCTAAGAAATTCATCAGGATGCCGCCAAGGGTCCGCATAATGTTCACTGCCGTATAGGCAGCTAAGAAAATGAAGGCCAGCAGGCCGAACACGATTGCGATGTTCACTGCCGTATAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 599-737 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBW01000055.1 Pseudomonas aeruginosa strain Pa1354 K29_S96_R1__paired__contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 599 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 659 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 719 19 67.9 0 ...................--------- | ========== ====== ====== ====== ============================ ================================ ================== 3 28 89.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGATCAGGCTCCAGTTCACTGCCGTATAGGCAGCTAAGAAACAGCGGGATCAGCGACCAGCCGATGGCCCGCAGTTCACTGCCGTATAGGCAGCTAAGAAAGTCGAGGCTGTCCAGCCGCAGCACGCTGCCGCGTTCACTGCCGTATAGGCAGCTAAGAAAATGCCGCCGACCTGGTGCTGGTCGACACGGTGGTTCACTGCCGTATAGGCAGCTAAGAAATTGACGACCAGCCAGAACCTGCGGCCGTTGGCGTTCACTGCCGTATAGGCAGCTAAGAAAGAGGAGTCCGAAGACTTGTCCGTGTCGTACCAGTTCACTGCCGTATAGGCAGCTAAGAAAAGGAACGTCCCGTCTCAGTTTGGAACGCCCACGTTCACTGCCGTATAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 455235-456639 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBW01000011.1 Pseudomonas aeruginosa strain Pa1354 K29_S96_R1__paired__contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 455235 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 455295 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 455355 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 455415 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 455475 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 455535 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 455595 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 455655 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 455715 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 455776 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 455836 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 455896 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 455956 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 456016 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 456076 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 456136 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 456192 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 456252 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 456312 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 456372 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 456432 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 456492 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 456552 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 456612 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 380-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBW01000083.1 Pseudomonas aeruginosa strain Pa1354 K29_S96_R1__paired__contig_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 379 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 319 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 259 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 199 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 139 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : ATTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1283-174 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBW01000084.1 Pseudomonas aeruginosa strain Pa1354 K29_S96_R1__paired__contig_84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1282 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1222 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1162 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1102 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 1042 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 982 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 922 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 862 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 802 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 741 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 681 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 621 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 561 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 501 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 441 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 381 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 321 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 261 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 201 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCTATAACCATTTGAAGGAAAAAGAAATACCGAGTTTTTCCCGCCAGAAACCCTCTTTTTTCGAGGTCTCGTAACTTGCTGATTTATAAGGGCGTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTGTAGGCAGCTAAGAAACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //