Array 1 28554-26270 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFFG01000135.1 Klebsiella pneumoniae strain TUM14769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28553 28 96.6 32 -............................ AAGAACCTTTCGATCGCTGCAATTATCTACGC 28493 29 100.0 32 ............................. GCGTGGACACGGATGTAGTGCTGGAGAAGGCG 28432 29 100.0 32 ............................. TTTACGGAATTGCTTAGGTCGCGAGAATGTCG 28371 29 100.0 32 ............................. TAGTCATTTGCCGGTGACGGGAACCCCATAGC 28310 29 96.6 32 ................T............ ATTAAATAATTCGTTTACGTCCATGACGAGAT 28249 29 100.0 32 ............................. GTAATCCTGATATTGGCGTATCAATGGTCACG 28188 29 100.0 32 ............................. TAACCTCGTTTATGTGCGCGTTTTATAGTTGC 28127 29 100.0 32 ............................. TGCGGGCCACCAGGGTTGCAGGGTATCAATGG 28066 29 100.0 32 ............................. GCCCAGATCGGCTTTTCATCCCGAAGCCGGGC 28005 29 100.0 32 ............................. GACACCCGCACGCGCCGGGCAGGCGTGGAACT 27944 29 100.0 32 ............................. TCGTCGGGTTTATTGAGTATTCCGCCTGATTT 27883 29 100.0 32 ............................. CAGGTCAGCGCAATGTTCCGGGATATCGAGGA 27822 29 100.0 32 ............................. ATGACAAAACCAAAATTGAGTTTTGGCTGCAG 27761 29 100.0 32 ............................. TTGTCCACTTCACGCCAGTAGTCTTTAGAGAT 27700 29 100.0 32 ............................. AATGGAGGTCCGGTTACTGCTGGAAATGTTTA 27639 29 100.0 33 ............................. ATCCCCACCACCGGCGCTGGCGAGTAGTACCGC 27577 29 100.0 32 ............................. GATTGTCTGACAGATAATGCAGCGCAATGCGC 27516 29 100.0 32 ............................. ATGTGAATTTCCTGGCCGGTTGGTAGTTTGAA 27455 29 100.0 32 ............................. TACTGAAACGGGTAATCAGCACAAATACCAAA 27394 29 100.0 32 ............................. CATCGCTTTATGCCGAAATGAGGATGATAGTG 27333 29 100.0 33 ............................. GAGCTTTCCTCCTCGTATCACTACCGCGCAGAC 27271 29 100.0 32 ............................. ATCAATTCCCTCATTTTTTTTCCTTTAGCTCG 27210 29 100.0 32 ............................. TTCATCTGGTAGCAAACCGCCATCGGGAAGAA 27149 29 100.0 32 ............................. ATTTTTTGGGGCACAATTTGGGGCATTTTTTT 27088 29 96.6 32 A............................ AGGGTTTCGATTTTATCGGGATAGAAATGAAT 27027 29 100.0 32 ............................. TGGCGGACGTTGTACCTGTGAGTTAATTCTTC 26966 29 100.0 32 ............................. ACCGCTCCTCTGACGCCAGGAGGGTGTAGGAG 26905 29 100.0 32 ............................. TCCAGGGGCAAAGAATTGCCCATTATCGTACA 26844 29 100.0 32 ............................. TTTGCAATATCTGCCTGCGCCGCCGCCAACGT 26783 29 100.0 32 ............................. CTCGGATAAAATGCCTTGCATGAGGCGAACGA 26722 29 100.0 32 ............................. GCGTCCAGTTGAACCCGGCACATTCCCGCTGG 26661 29 100.0 32 ............................. TACGCAGCCGGATCCAGGAGCGCATGGACGCT 26600 29 100.0 32 ............................. GCACGATATTCAGCATCATCAGGACGGTTCAT 26539 29 100.0 32 ............................. TCACGCCCAGGGCTTCCTTTGCGTTCCGAAAA 26478 29 96.6 32 ........T.................... CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 26417 29 96.6 32 .....A....................... TGCGTCACGACGCCGGCGACAGTGACATCGTC 26356 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 26298 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 224-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFFG01000046.1 Klebsiella pneumoniae strain TUM14769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 223 29 100.0 32 ............................. AAGAACCTTTCGATCGCTGCAATTATCTACGC 162 29 100.0 32 ............................. GCGTGGACACGGATGTAGTGCTGGAGCAGGCG 101 29 100.0 32 ............................. TTTACGGAATTGCTTAGGTCGCGAGAATGTCG 40 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCGGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTAGTCATTTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //