Array 1 313-3452 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRL01000066.1 Streptomyces niveiscabiei strain NRRL B-24457 B-24457_contig_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 313 29 96.6 32 ............................T GGAGGGGGCTGGGCGGCGCGCTCGCGGCCGTA 374 29 100.0 32 ............................. GCGAACGCCTCCCCCTGGCGCTGCCCATTGTG 435 29 100.0 32 ............................. GACGCGCTGGGCGCCGTGAAGGGCGAGCTCCA 496 29 100.0 32 ............................. TGTTCTCGATCAAAACGGCCCGGCGAGAGGGA 557 29 100.0 32 ............................. GCCGACATCGAGGTCAGCGAGGCGTGGGTGTG 618 29 100.0 32 ............................. CTGAGGTCCTTCAGCCGGTCGGGCTCGGGCAG 679 29 100.0 32 ............................. GCAGGGGACTTCGCGGTCATCGGATACGGCGT 740 29 100.0 32 ............................. CCGGTGAGACAGGCGAGGCCCTGCGCACTGCG 801 29 100.0 32 ............................. TTGATCTGGCTGTAGTCGGTACCGGGCACGCC 862 29 100.0 32 ............................. CTGGGGCTGGACGAGGGTGCGCAGCGCGGTGT 923 29 100.0 32 ............................. TCCTGACGCGGGATGTGGGCGTCAGGACATCC 984 29 100.0 32 ............................. GCAGTATGGGGGCATCGCCATCCCTGGGTGTG 1045 29 100.0 32 ............................. TTAGACATCCACGGCAGATGGGCCGACGAAGA 1106 29 100.0 32 ............................. CTCCTGGAGGTGGCCGTCACCCGCGACCAGGC 1167 29 100.0 32 ............................. GCCCGGGCGGAGGAGTTCGAGCGGGCCCGCGC 1228 29 100.0 32 ............................. CCGCCGGTGAGCGCGTCGAGGTCGGCGAACCC 1289 29 100.0 32 ............................. ACGCTGTGGTGGCGGAGAAGTAGGCGGGAATT 1350 29 100.0 32 ............................. TTCCCGCCCACTTGAGCAAGATCAACACGGGC 1411 29 100.0 32 ............................. GCGCAGGCGAAGCAGAGCCGGACGAACCACAC 1472 29 100.0 32 ............................. ATGCTGCCGTGGGTGCCGGTGCGTCCGGCGGA 1533 29 100.0 32 ............................. ACGGGCCGACGTGGACCTTCTGGCCAGTGGAC 1594 29 96.6 32 ........T.................... GTCGAGTCGCGCGGTGGTGACGGCGTTGTGGT 1655 29 100.0 32 ............................. GTGAGGTCGCCCCCCGCCTTGAGGACGGGGAC 1716 29 96.6 32 ............................A CTCCGTCCCGCCGCCCGGACCATCGCCGCGCA 1777 29 100.0 32 ............................. TAGGTGTCACCGAGGGCGACTTTCGCCGTTCC 1838 29 100.0 32 ............................. CTGTCGATCACGACGGCCTGGTGGCCGTAGTC 1899 29 93.1 32 ...................A........T TCCGAGTGTGCCTACCGCCCGCCGACCCGAGA 1960 29 100.0 32 ............................. GCGGTCTCCTTACAGATCCGTTGACCGGACAG 2021 29 100.0 32 ............................. GTGTTCAGGCGGTAGCTCGCACTCATCAGGTC 2082 29 100.0 32 ............................. ATCCGGCCCGAGGTGAAGCTGGGCGGCCGGTG 2143 29 96.6 32 ............................T CCGCTGACGCCGTCCCCCCGCCAGCTCGTTGA 2204 29 100.0 32 ............................. TAGCCGACGAATCCCGAGCCCACAGCGCGGGT 2265 29 100.0 32 ............................. ATCACGACGGGTTCGAGTCGCTGGAGCGTGTG 2326 29 100.0 32 ............................. ACAGGGTCTTGTCCGGGGTGAGTGCGGCGGAC 2387 29 100.0 32 ............................. GTCCTCTACGACCTGACGGAACTGCGCGGCAA 2448 29 100.0 32 ............................. TTCGTGTAGACGTCCTTGAGGGTCGCCTTGAC 2509 29 100.0 32 ............................. ATGCTGCGGGAGGTGTGCACGAACATCTGGGG 2570 29 100.0 32 ............................. GCCGGCGCGGACACTACGGCGGAGGAACTCAC 2631 29 100.0 32 ............................. CAGGGCGATGCCGTCATGGCCGGCCCTCACCC 2692 29 100.0 32 ............................. TCCGGGCCGTTCGTGTTCGACCTGATCACGAC 2753 29 100.0 32 ............................. AAGAAGGTCCCCCCGGCGCCGAAGCCGTACGG 2814 29 100.0 32 ............................. CCGGCGCAGTTGTCGCAGGTGCGGGGGGTCCG 2875 29 100.0 32 ............................. CGGTCGGCGTCGCTGTTCGGGTCGCGGGGTAC 2936 29 100.0 32 ............................. GTCCACTACGAGGGCACGGCGGTCAGCACGCG 2997 29 100.0 32 ............................. CCGGCGGTGACGACGATGGCGCCCTTGTCGTC 3058 29 100.0 32 ............................. AGAAGAACTGGGCCGTAGTCAAAGGGCCTCCA 3119 29 100.0 32 ............................. GCGCTGATGTCCAGCTCGGCGCCCTTGTCGGT 3180 29 100.0 32 ............................. GAGTCGTCCTGGACGAGCCCCTTGAGCCCTTT 3241 29 96.6 32 ..C.......................... ACGCCCGCCCCGTCACCACCTCGCCCGGCGGC 3302 29 100.0 32 ............................. CACATCAAGAACATCCGGCGCCTGGTCGACGA 3363 29 96.6 32 ...........A................. TGCCAGACGACTTCCAGGTGGCTGAACTCCTC 3424 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 52 29 99.5 32 GTTCTTCCCGCGCCAGCGGGGGTGGTTCG # Left flank : ACCGGTCCCACAAGAACAACGCCATCGCCGCCGCGTCCAGCAGATGCCGCACCAACGGATACACCGGGAAAGCCGTATCCAACCCCCGGGACTTCCCCCAGAGCGACTCATCCACCTCCACGAACGCCTTCCCCATCACGCTAAACTCCTGCCCCCTCGCGACTGCTCCGACGACCGACGACCCAACCACAGCCCACTGACACCCACACCCCACACACCGCATTCAGGCCGGATCGACGACAAGGACGACCGAGTGTCGACAGATCAAGCAAAGAAAAGGCAAAGGGGTTACTGAAGCCCAGGTCAGGAAGTG # Right flank : GGCGCCGGAGGGAGGTGATGCCGTACAAATCGTTCTCCCTGCGGACATCGAGACGCGCCATCAAGATGCCGACGCAGTTGGACTGGATCGAGATCAACAGCTTCGGCGGCTCCAGAGCAACCTCATAAAACCAAGGCTGCCTCACCCTGAAGGCACCAACTCCGCCGGTGTCAACGCCACCAGTCGACAGTTCGGCAACTCCAGAGGCTCCAGCACAAGAATCCGCACAGTGAACTCTTTTCCTCCATACCGAGGCAGGTGAAGGCGCCGGGGCGAGCTGGATACCGGGTACGTCACGGTCGGTAGGTCGGCGTCGTTCCACATTCTGCGGGCGGTCGGGTCGAGTCTCACCTTCTCGATGATTTCCTGAAGCCGTTCGTCCTGCGGCCATTTCTCCGCGTGGACCCGAAGTGCAGCCATCGAGGGGAGCGCCCAGGATTCCCGCCAGTCGATGAGCTGGGTGCGCGCCTCCGGAGAGGTCAGGACCCATTCCACGACGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCCCGCGCCAGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6109-7357 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRL01000787.1 Streptomyces niveiscabiei strain NRRL B-24457 B-24457_contig_787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6109 29 100.0 32 ............................. TTCCCGGGCCTCTTCGACCTCGGCGGTGCGGC 6170 29 100.0 32 ............................. ACCGGCAGGATCACCCACAGCTTCTGCCACGG 6231 29 100.0 32 ............................. ACCACACCCTGTGGATCCCGACGGCAGGCGAT 6292 29 100.0 32 ............................. ATCCTCGGGGCGGCGGCCGGCGTCGAAGCGAA 6353 29 100.0 32 ............................. GTCCCGCTGGTCTGCGCGTTCTGCGTCGCTCC 6414 29 100.0 32 ............................. TGCCGCTGGTTGCCGGGGAGGGATTTGGGCGC 6475 29 100.0 32 ............................. TACGCCTCGTACTCGTCGTCGTCCCACAGGGC 6536 29 100.0 32 ............................. TCGGGCGAGATCACGTACCAGGTGAAGTGGCG 6597 29 100.0 32 ............................. TCGTTGGCTGACGCTCCGGGCGGGACGCGTAC 6658 29 96.6 32 ............................T GGGACGGCGGCCCGGACGGCACCCAGCCCTAC 6719 29 100.0 32 ............................. CACTGGGACGGCATCAGGTCGGCGACCGTGTC 6780 29 100.0 32 ............................. AATCGCTGTGCGGCCGTCTGCGGTCCGTACGC 6841 29 100.0 32 ............................. ACACTCTTCGGGGATAGCTTGCTCCGCTTGCG 6902 29 100.0 32 ............................. TCGACAAGTGGTCCTCCCGCCACACGGGAAAT 6963 29 100.0 32 ............................. GCGCCCCGCAGCGACACCGCCTCAGGACCCGG 7024 29 100.0 32 ............................. CTGAACGTGTACGGGGCGAGGCTGCGGATCTC 7085 29 100.0 32 ............................. GAGGAGATCTGGGTCCACTGTCGGCTGCCGGT 7146 29 100.0 32 ............................. CCGCAGAAGGAGGGCTGATCCATGGCGATCGG 7207 29 100.0 32 ............................. TTGACGACGGACACGTCGCCGCGGTGGAGGTC 7268 29 100.0 32 ............................. CGGGGCGAGTGACCTGTGGCGTTCGACCTCGG 7329 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGCTTCCCGCGGACGCGGGGGTGAACCG # Left flank : ACCCTCCTCAGCCCCGCCGCCGACAACGACGACGACACCGAGGACGACGACAACGCCCCCGAACACCGCGACATCCGCCTCGTCCACCTCTGGGACCCCAAGACCGGCACTCTCCCCGCCGGAGTCAACTACGCCCCCACCGGAGACTGAGCGATGCCCTCCATGCTCGTCATCGCCACCACCGCCGTCCCCGACTACCTCCGCGGCGCCCTCAGCCGCTGGACCACCGAAGTCGTCCCCGGCATCTTCGTCGGCACCGTCTCCACCCGCGTCCGCGACCAGCTCTGGACAGCCGTCACCGACACCGTCGGCGACGGCGCCGCTGTCCTCATCCACCCCGCCGCCACGGAACAGGGGTACGCCATCCACACCGCCGGCACCCGACGCCGGGTACCCCATGACTTCGACGGGCTTACGCTCATGCGGATGACGGGGCTGCCTGCATCGCCGAGCATGGCAAAGGGAGGGCAAAGCCGGTACTGAGGTGCAGGTCAGGAAGT # Right flank : TCCGGCGCCTGAATCCTGACCCGGTGTGGGCGGTCGAGTTCTGACCCACCGGGTCTGGTTGCCGCGGTCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTCCCGCGGACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9457-10095 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRL01000794.1 Streptomyces niveiscabiei strain NRRL B-24457 B-24457_contig_794, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9457 29 96.6 32 ............................T TGCGAGCAACGACATTCTCCGACCCGGTTACA 9518 29 100.0 32 ............................. ACGTGTGAGATTCCGGCGACGTTCCAGCCCTG 9579 29 100.0 32 ............................. TGCGGTGGCTTCGGTTCGTGGCTACCCTCTCG 9640 29 96.6 32 ............................T TGCGGACGGTGTGGACCAAGGGCGCGTCCATG 9701 29 96.6 32 ............................G TCCTCGGCGGACTCGGGTCTGCCGAACTCTCT 9762 29 96.6 32 ............................T GGACCAGGGCTATGTGTCCCGGCTGGAGCGAG 9823 29 100.0 32 ............................. TCCGGCCGCATGATGGCCTCGCCGCCGGACAT 9884 29 96.6 32 ............T................ ACGCCGAGCTGCACCAGCTCGTCAGGCATCGC 9945 29 96.6 32 ............................T ACGGACCGGCTCCAGCTCCCCGCCCTCAGACG G [9967] 10007 28 93.1 32 ..............-.............G CACAACGCCGCCGCTTACGTCGGATCCCACGA 10067 29 82.8 0 ...A....A..A......A...C...... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.0 32 GTCGTCCCCGCGCCAGCGGGGGTAGCCCC # Left flank : GCTCCCCACCTCGACGAAGACCTCAACGGCCTCTGGGGTGACGGCGACACCATCGTCAGCGGCGGCCGGAACTGGGGCACCCCCTTCACCGACGACCACCACCTCGACGTCATCCCACCGGACCCCCCGACGCCAGGTACAGAGGAAGCGCCATGAGAACGGCAGCCACCGTCGTCGTCCTCATCGCCGCACCCCCCGGCCTGCGCGGCCACCTCACCCGCTGGTTCATCGAAGTCGCCCCCGGCGTCTTCGTCGGAACCCCCAACCCCCGCATCCGCGACCGCCTCTGGCCCCTCCTCACCGAACGCATTGGCGACGGCCAGGCCATCATGCTCGAACCCACCCCCAACGAACAGGGCTGGACCGTCCGCACCACCGGCCAAGACCGCTGGACCCCCACCGACTTCGACGGCATCACCCTCATGGCCCGCCCCCGCACCCCGACGAACCAGGCAAAGGAAAACCCCATGATCACCAGCTGAAACAGCAGGTCAGGAAGC # Right flank : CCTTAGAACATCTGGGACCCGACCATCCCGGAAATCTCCCGGCATTTTGACATGCCTCAACTGATCGTGCTGGGCGGGGACTTGCTGGCGGCGGCAATGAGTTGAGCGGAGGGCGACCGTACCGCGTCAAGCGGGAGGGCATCCGCAGCGCGGGTAAATCAAGACTTACCTTTGCGGGCTCCCACCCCCATAGTGGTGAGCCGCACCCAGAGGAGGCCCCCCGTTGTCGCAGATCAGCGACGGTCCCGCGCGTCAGGTGAAGGCGCAGCAGGCTTACGTGTCGACCATGTACGGGCTGTTCGACGAGAGGGTCGCGCAGGTCCGGGCGCAGCTCGCGGCTGTTCTCAAGGCGCCGGCCGACGGTGGGCGGGAGGTGTACGAGCGTGATCTTGCCGCGGCCCGGCTCGCCGGGGAGATTCGGCGTTATGAGGCGGCCGAGAGCGGCATGGTTTTTGGCCGGACCGACGCCGCAGATGGCACCGCCCTGCATATTGGGCGCC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCAGCGGGGGTAGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2253-2894 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRL01001027.1 Streptomyces niveiscabiei strain NRRL B-24457 B-24457_contig_1027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2253 29 96.6 32 ............................G ATCAGTGTCAGCCTCGCCGAAGGGCAGGACGT 2314 29 100.0 32 ............................. CTCCAGCACGTGAATTCGGCACACTTCGCCTC 2375 29 100.0 32 ............................. AGCGTGGCGCCCTGCTCGTACGCCCTGACCGT 2436 29 100.0 32 ............................. GAGACGTATCCAGGCGTTGGAGCATTCGGGAA 2497 29 96.6 32 ...........A................. CGCACCGAAGCACTCCGCGCAGCCCTCGAACA 2558 29 100.0 32 ............................. GCCCGCTTCACGACCCACGCTGGGGTCATGGA 2619 29 96.6 33 ........................C.... GGCTTGGCGGTCTCCGGCTCGCAGATTCATTCG 2681 29 89.7 32 TGT.......................... TCCGCGACGACGGCGGAACCGCGCTGCGCGCT 2742 29 100.0 32 ............................. AGGTCCTGTTCACCCGGCCCGTGCCGAAATCC 2803 29 89.7 33 ...........A.....A........T.. AGCGGCCGGCGCGAGGACCCGGGACGAGGACCT 2865 29 89.7 0 .C.........A....G............ | T [2881] ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.3 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : CATTAGCTAAGTCGACATTGCCCAGGTTGCAGATCGGACGGCACTCAACCATCTCAACCTCTGCCCAGAAGGCAGAAACTGCGGCTCCCGAAAGCACCTTGTTGATGAATGCCATGGACACCAAGGACGATCTGCACTTCGCCCAGCAAACGTCCATGCCGACGCCCGGCGGGCCGGCCCGAGCTCCCAACCGTGCAAGCTTCGAGGACGCAGCCCAAGACCCCCGGCGCCAACAGCGACCCAGTCCAGCCACACCCTCGAAACAACCCCTGACGACCAGCAGCGTTCCGTACGATTGGCATCTCGACGCCGGAGAGACCAATGCCCTTCACACCCGCGACCAGCCAACACGCGAACCACAACAACCAGCGCTGCGTCACCAGCCCAAGCACTCCCCGCCCCTCTCCTCCAGCAAGCCGCCACCAGTGACCAAATTGTCCGTTTCTCTACAAGTAACGAAAAACAGCCCAGCAGCCAGCTAAAGCCCCAGCTCACGCAGT # Right flank : CTCCTCAACCGGCAAGGGGGGCCGGGGCTCTCGTGGTCCCCGTGCACGGGGTATTCCTGCGGTGGTGATCATGTCTTTGTGCGAGGTGGCGGCTCTGCTGCTTAATTCGGTGTCCTGGCAGCGAGTTGGTGGCTGAGGCGGGTGAGTCTGCTGGGCCAGGGTGTGAAGGGTGGTTGGCTGGGGTTCCAGGGGGTGTCGAGGCGGATGACGTTGACGGCGGTGGTGGAGAAGGCGTACTTGGAGGCGGACTTGGGCAGGCCGCAGTAGCGGGCCCGGCGGAGGCCGGTGACGTCGAGGGTCTGGTTGATGGTGCCCTCGGTCCCGGCGTGGAGGGCGTGTTTGGTCTTCCAGTCTTGGTGGCCTGGTCGGCCCAGGCTTCGGTCAGGGGCTCGTGGAGTTCCTTCGGGCGGAGGCTGAGGGTGCGGGTGCCGCGTGCGGAGGTCGTGTACTTGTCCTGGACGGGGCGGGCATGGCCGTCGGTGCGGGCGAATTGGATGGCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 576-2558 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRL01000246.1 Streptomyces niveiscabiei strain NRRL B-24457 B-24457_contig_246, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 576 28 100.0 34 ............................ TCGCGCACCTGATCGGCCACATAAAGCAGTGCGA 638 28 100.0 33 ............................ CCCCCGTGACGCACCGTCAAACGTGCAGATCGC 699 28 100.0 33 ............................ CGGGTGCCGTGGGGGCCGGGCGAGAGGCCACCG 760 28 100.0 33 ............................ CCGGATTTCGGGCGCAGTAGGACGTCTTGCCAT 821 28 100.0 33 ............................ CCACGACGTCCTCCCGGAGGACGCCGCCGAGCG 882 28 100.0 33 ............................ CGGGACGATGCCGGTGCAGGGTCGGCGGCCGCA 943 28 100.0 34 ............................ GCACGACCCGATCCAGTTCACGATGCCGCAGGTC 1005 28 100.0 33 ............................ GCGGTAGCGCCCGTTGCGCCACCCGTTCGGGTT 1066 28 100.0 34 ............................ ACCACCTCCTCCCGCGCCCACCACTCACCTCGTC 1128 28 100.0 33 ............................ CCCGACGGGTGTTCACGGGGTGATGATCCACCA 1189 28 100.0 33 ............................ CCGAGATGCGCCCTCGACGGCTGCGCGTCCGGC 1250 28 100.0 33 ............................ CGTCCAGATCGGCACCCTCGACCAGATCATGTG 1311 28 100.0 33 ............................ GGCACACCCGACCTGGACGACCGCCTGGCTCCA 1372 28 100.0 33 ............................ CGCGATGCCGACGATGCCCATCGCGATCTTCTC 1433 28 100.0 33 ............................ GGGTGGTGATATGGCGTGTCCGGTCGATGACAT 1494 28 100.0 33 ............................ CAGCGGCGTCCCGGGCAGCGTCACCCCGACGTT 1555 28 100.0 33 ............................ GCCGTGCGGGGGCCTCGCCCAGGGCGTCGGCCC 1616 28 100.0 33 ............................ TCTCCCCCCACCCGATCGGTGCCCGCCCTCTTC 1677 28 100.0 33 ............................ TCAACCGGGATGTATCGGACACGCTCGGATAGT 1738 28 100.0 33 ............................ CCTGCGCCGAGAGTTCGGGATGAGCAAGGGCGA 1799 28 100.0 33 ............................ GTACGGGCCGCGCCAGATCTGGCCGTCGTACCA 1860 28 100.0 33 ............................ CCCGCACCACGGGGTGCCGCTGACGCCCCACTG 1921 28 100.0 33 ............................ CCGAGGGCGCGTGCTGCCCTCACCCTCGACGGG 1982 28 100.0 33 ............................ CGTCGCCGGCCTTCTCGCCGTCCTGATCTGGGC 2043 28 100.0 33 ............................ CCGAGCCGAGATCCTCGCCAAGGCCCTGTACGA 2104 28 100.0 33 ............................ CCGCCGCGCGGCCCACGCCCGCCGCCGCACCAC 2165 28 100.0 33 ............................ TACACGACCGGTGGTTGCGCCTCCGCGAAGGGG 2226 28 96.4 33 ..........A................. TCCGGCCCTCCTGGACTCCAGTGTCAAGGGGCA 2287 28 96.4 33 ............T............... CTGGGTGGCCGCCGTGTATGCCCGGTGGGCAAA 2348 28 96.4 33 ........................A... TCCCCAGCCCAGCCCCTGACGGCAGGTCAGGAG 2409 28 100.0 33 ............................ CCGCGCCTGTGCTCTCCATCGTGACGGCGAGGA 2470 28 96.4 33 .................A.......... GCCGACGAAGCGGCCCTTCTGCCCGGACAGAAC 2531 28 92.9 0 ...C.....................C.. | ========== ====== ====== ====== ============================ ================================== ================== 33 28 99.3 33 GTCGTCCCCGCGCCAGCGGGGGTTGTTC # Left flank : ACAGCCCCCCGACAGCCGCCGTATCCAGCAGATGCCCCAGCAACAAATGCGTCCGCCCTCCATTCCGAGCAGCAGACTTCCCCCACAACCGCGACACACGCACCACCGTCTCCTCCCTCACCCCCAACACCCGCATCAACTCCACCACCGACCGCTCGTCCTCCACCGCTCAAACCCTCCCCGCATCCATAATTCCGCCTGCCCCTCAAACCATAGACACCACCACTGACAACGCCCCCTGGCCAGCCAACTCCCGCACCACAGCAGCCGCAAACACCCAATCTGACACCACCGAGCACCATTCCACCCACCCCCGTGTAGCGTTAACGCCCCTCCCCGACCGGAAGAACCAACCGACGATCTTGAACCACCCAGCCAACCCGACATGAACGGCCTTGATCCTTTCCCCACCGTGGCAACCGTCCCCCACCACTGAACACCCGCTGAAGCAAGTAAAGAAAAACCGGCTCACCCACTCCAATCACCGCAGGTCATGAAGT # Right flank : CGCACACCTCACCCACAGTCCTCCTATGCCCCTGCGTGTGCAGACGACCCGTGATTCCCTGCCCGGCACCGCCCTGAGCCGCCTCGCGCAGGCGGCGGACGTCGTGTCCTGGCCGGGCATGGACAAGCCGTCCCCCGCTGGCCTCGCGACGCTCGCGCCGGGCGTCTCCGCAATCCTGGCCCTCGGCAACGGCACGGTGGACGCGGCTCTGATGGACGCCGCCGGTTCGGCCCTGCGCGTGATCGCCCCGGCGAGCATGAGGTACGACAACGCCGACCGCGTCGCCGCCGCCGAACGCGGCATCACCGTCACCCACGCCCGGGGACCCTCGCCGAGACGACGGCCGACCTCGCCTTCGCCTTGATCCTCGCGGCCCGGCGCCGCCTGGGAGCCGCCAACGCGAGCCTCATATCAGGTGCATGAGTACCTCGGTCTGGACGTCCACGGCGCCACCCTGGGCCTGATCGGCCACGGCCAGATCGCCCGCGCGGTGGCCCGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCAGCGGGGGTTGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4465-4070 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRL01000346.1 Streptomyces niveiscabiei strain NRRL B-24457 B-24457_contig_346, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4464 29 100.0 32 ............................. CGAGAGTCGAGCGGGGCGTTGCTGTCGCCGGC 4403 29 100.0 32 ............................. CTGGCGGTGCTCATCCCGGTCGCGATGGAGGT 4342 29 100.0 32 ............................. GTCCGCCAGGAACGGCGCCGCGTCATCGAGGA 4281 29 100.0 32 ............................. TCGGACGTGCGCCCGGCGTTGTCGATCATGGC 4220 29 100.0 32 ............................. ATCACGTACGCGCCCTTGCCGAGCAGGTCGCG 4159 29 93.1 32 ...T.....................G... AGGTCGTACAGCTCGTTGTAGGACCACTGGTG 4098 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGCTTCCCGCGGACGCGGGGGTGAACCG # Left flank : GGCCAGCTCGCCGGGCTGATAGCTGGTGCGTGAGACCGGATCGACCGGCAGATAAGCGGGCCGCAGCTCGCGTACGCGTTCTTTGAGGACGGTCATGCCACGGTCCCAGCCAATCCGTTCGGCGATCACGGTCGCGGGCATCGTCGGGGTCTGCTTCAAAAGCTCCCGGATCTGCGGTTCGACCGCGTCGACCGCCGAGCCCTTCGCTGGCCGCGAGTAGACCGGCGGCCGGTCGGTGGCCAGGGCCCGCTTCACGGTGTTCTTCGAGATGCCCAGCTGCCGGGCGATCGCCCGGATCGGCATCTGCTCGGCCCGGTGCAGCCTGCGGATCTCTGCCCAGTCCTCCACGGAAATCACCCTCTTCTCCTGACCTTCGATCAAGATCAGGTTGGTCAGAAGACCACGAAGTGGGTCAGTTTTGATCCGCCGTCAGAGGGTCACGATTCACCCGCCGCCGACAGTGAACCGGCATCCGGACAGGCGCGCGAGAACCGCCCTGA # Right flank : CACGCCCGCGCTGCGGTGCGCCGTCGGCTCCATTCCGAACCAGGTGGCGAACTGGCCGGACGCAGCGCGTCGTCCGCCGCCCAGGGACTTCACCATCCCCGTCGGGAACCGGCTCGCCGGGTGCGGCTGACCATCGCACCCGGCACGTCCTACAGCTCTCCGCTCAGCACAGCACGCCGGGCGCGTACTTCACCACGCCTGACGTCGTGGCGTCCCACATCCAGATCTCGGTTTCCCGCCAGAGCCTCGGCAGCTCCAGGACAGGTTCCGTGAACGGGTCACCCGTCCGGGCCAGGCGACGGCTCCCCGGTAGCGGCGTTCACCCACCCCGTCTCGACCGGCGAGGGTCTCCAGGAGGCATCGTTCGTGAGGATCGCGGCGAGACCCTCACACTCATCTCGCCTCCGCCCGCCAGGGCCGCCGACTCGATCAGGTCCGGGGAGATCCCCTACTCGGCGAGCGCAGGGAGCTGACGGGCGCGGAGAACGCCATGCGGAACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTCCCGCGGACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1483-1027 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRL01000445.1 Streptomyces niveiscabiei strain NRRL B-24457 B-24457_contig_445, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1482 29 100.0 32 ............................. GACATCGGCGTCCCGAACCCGAACTCGCCCTT 1421 29 100.0 32 ............................. ATCTCCGCGTCGATGCTCAACGACTCCGCCGT 1360 29 100.0 32 ............................. AGCAGCGCGGGGATCCCGTCGATGCGTTTGCC 1299 29 96.6 32 .........A................... TTCGACGGGCTGGGCGCCCGCGCCGGGTTCGA 1238 29 100.0 32 ............................. AGCGGTGTCTTGCCCCAGCCCTTAGCGCGGCG 1177 29 93.1 32 ...........T............C.... TCGTACGGCGTGAGGGCCTGAGTCGGCGTCGT 1116 29 100.0 32 ............................. GATGCACCGGTACGCCTCGATGTCGTCCGGGA 1055 29 89.7 0 ...A........T...............T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : GGGTAGGGGTGGCGGGGATAGGGTTAGGTCCGGAGCTTCGGGGAGGGGTGACGAAATGTCCGGTTCTCGGGAAGTAATGAGAAACGGCCGCTCGCCCGACTAAAGGCCCAGGTCACGAGC # Right flank : AGCCGCTGAAGGTGTTCATGGTCGAGACTGTCGTGGTTCCTGCGCGCGGGAGTACGGCATCTCCAACACCAGCGGGTCGCCGTCCGTAGGCTGTGGTTTGTCCCAGGAGGTGCAAGTGACACTCCACAGCGAGGACTTTCCTGGTGATGACTCACACGGCGTGAAGACCCTGCCGTGCTCTGGTGGAGTCGGGAGCTGGACCGGCAACTGGGACAGTGACGACCTCATGAGTCGCCGTGCGACCGGCGCGGCCGGCTATCCCTGATAGGTGCGGGTCGGTCGGTGCTTTGTGGGCGCCACCAGTTGGGGGTCAGCAGTGCTCCCGCCACTGCGCCCGCCGTGTTGAGCAGGACATCGTCCGTGGACGATACGCGGCCCACCGCCAGTGCGTACTGGGTGATCTCCACTGCCGTCGAGAGGAGTGCCGTGATGGCGGCCACCCTTCCCAGGGTTCTGGAACGGCGGCTCCGGATCGGTAGGAGGGCACCGAATACGAGGAG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //