Array 1 187391-185530 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTF02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0317 NODE_3_length_350961_cov_40.894178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187390 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 187329 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 187267 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 187206 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 187145 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 187084 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 187023 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 186962 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 186901 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 186840 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 186779 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 186718 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 186657 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 186596 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 186535 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 186474 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 186413 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 186352 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 186291 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 186230 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 186169 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 186108 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 186047 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 185986 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 185925 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 185864 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 185803 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 185742 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 185681 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 185620 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 185559 29 93.1 0 A...........T................ | A [185532] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204852-204031 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTF02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0317 NODE_3_length_350961_cov_40.894178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204851 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 204790 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 204729 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 204668 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 204607 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 204546 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 204485 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 204424 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 204363 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 204302 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 204241 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 204180 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 204119 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 204058 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //