Array 1 12570-12072 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPJ01000001.1 Capnocytophaga stomatis strain 11058B-1 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12569 36 97.2 30 .................A.................. ACTATTTAGGACGAAATTAGTATAAGCACT 12503 36 100.0 30 .................................... GAATCGCTTTAAAAATAGAAAAATAAGTCG 12437 36 100.0 30 .................................... GAGTATGGACGGCTGGGATGCCGAGCTTCT 12371 36 100.0 30 .................................... TTGGTGGTTCGATGGGAAGCGTGGTAGGCG 12305 36 100.0 30 .................................... TCACAATCTTAAAGGAGAAAAATTAGACAA 12239 36 100.0 30 .................................... ATGTATGAAAGAGGGGAAAATTCAGAGAAA 12173 36 100.0 30 .................................... AAGCCTTTACAGAGAAAACACAAATGACCC 12107 36 97.2 0 .................A.................. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.3 30 GTTGTATATAATCTCATTTTGAAAGGTTATTACAAC # Left flank : TGAGGTAGTAATTACTACAGAAGAACAGTATCCTCAACATATTATTGTTGAATTTACGCAAGAAAAGTGTGCTTTGTTAGATGCTTTTTATATAGGTCAGTTGGTGAAGATAAGCTTCAATGTACGCGGTAGAGAGTGGATTAATCCTCAAGGAGAAGCTAAGTATTTCAATTCACTACAAGGCTGGCGTATTGAAAATATGGAAACAATTCAACAGGTTTCTCAGCCATATGGAACTGTATATGGTTCTTATCCTCAAAACACACCCCAAGTTTCTCCTAAACAAACAGAAATGTTTGATGGTTTTAGCAACCCTCCTTTTCCTGTTTTGAAAGAAAATGAAACGCAGGAGAATTTTGATGATTTACCTTTTTAATAGTATCTTTGCCCAAAAGATTGTTGGGGCGGTTGTACGTCCTTGAGCTGAGGAACAATCACTCGGCAAAATCTTTCAAAAAGGTTGTTACAACGACTATTTTTTTTGACTATTTAAGATAAAA # Right flank : AAATCTGATATAAATACTAAAAATCATAAAATGGAGATAGAAGATTTAATAAAAGAATACAAAAAGTTAAAAATAGAGGAAGTATTTAACTATGAGGAATTTAATAATATTCTTCTCACAACCCATTCAACAAGGATAGAAGGTTCTACTTTGTCTTTTGAAGAAGCTTGTGAACTCATACAAAAAGGAAATACACCTGCAGGAAAAAATATAGATTTTTCTTTACAAGTTTTAGACCATTATAATGCATTAAAGTTTGTGCTTTCCGAAGCAGAAAAAGACAACAATTTGTCCGTAAAACTCATTCAGGAAATTGCAAGTAAAGTAATGGCTAGGACTGGCGAAATTTATGAAAATATTTTAGGAAAGGTTGATGTTTCAAAAGGAGAGTTTAGGAACACTTCTGTTAGGGCAGGAAATAAAACTTTTATGAATTTTCAAAAAGTTCCAAGTGCAGTAGAAGCTTTGGTAAAAGAACTTAAAGAACTTTACCCCAAGCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATATAATCTCATTTTGAAAGGTTATTACAAC # Alternate repeat : GTTGTATATAATCTCATATTGAAAGGTTATTACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 590480-592416 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPJ01000002.1 Capnocytophaga stomatis strain 11058B-1 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 590480 36 100.0 30 .................................... GTTAGCTTCTGTAGAAGCACAGATTAGAAA 590546 36 69.4 83 ...................TGCT.T...T.CATG.G TTCCTTTGAAAAACAAATAAAAAACTCACGAATAAAATGAGAGCAGTTCCAACGGACGAACTTTACGAAATGACTTTCACAGT 590665 36 100.0 30 .................................... AGGAGGCATCTTCATTAGAACCTCTGAGCT 590731 36 100.0 30 .................................... AAAATGAGTTTTATGCTGAATTAGGACATT 590797 36 100.0 30 .................................... ACAATCACGTAGCTTCTCTAGTAGCTAGTT 590863 36 100.0 30 .................................... GCAAATGGCTTAAAGACTACGAAGAGGAGA 590929 36 100.0 30 .................................... AAGCAGTAAAAAATATTACAAAGAAAGCTC 590995 36 100.0 30 .................................... GAAAAGCCCTTTGAGGAACTAATAGAATAT 591061 36 100.0 30 .................................... ATATGTATCTTAGGGAAGTAAGACGGCAGA 591127 36 100.0 30 .................................... GCTTTGGCTATACAGCCGACGGCGCAAGGC 591193 36 100.0 30 .................................... ATCCTCCTCTCAGACCTGCAGGTGCATTTA 591259 36 100.0 30 .................................... CAAACCGAAATTTTTGGTACTCGAAAATGT 591325 36 100.0 30 .................................... AATAACAGAATGTTTGAATTCAGCCAAATA 591391 36 100.0 30 .................................... CTGTCTCTTGTAAGTATTAAATGCAACTCT 591457 36 100.0 30 .................................... TTGAAGCACCACCGCACTTCGCGGCTGTTT 591523 36 100.0 30 .................................... TTTATATAATTTTTCTCTTGAATAAAAATG 591589 36 100.0 30 .................................... AAATGGTATTACAAAATCTTTTATTTTATG 591655 36 100.0 30 .................................... GGGTTTGATGAACATATCTACCTGACCTCC 591721 36 100.0 30 .................................... ATCCAGCAACCATTACTGACGTGCAAGTGG 591787 36 100.0 30 .................................... CACAACGCATTATAAATCAAACGTTTTATC 591853 36 100.0 30 .................................... GGTCGTGTTTCGTTTAAAGGTTTTAACGGA 591919 36 100.0 30 .................................... AACCACCCGCAACGGGATAGCCTCTTTTTT 591985 36 100.0 30 .................................... CATATCCTCGCCTAAGAATAATGTCACCCT 592051 36 100.0 30 .................................... GAAGGAAAAACTGACCTAATTTACATCATC 592117 36 100.0 30 .................................... GTTGATGAATTCTGAACGATATTCAAAACC 592183 36 100.0 30 .................................... CGTAATCCGCGATAATAAATAATGTACTTT 592249 36 100.0 30 .................................... TTTTAGAAAGAAATCTTATGAAATAGAACA 592315 36 100.0 30 .................................... GAGCTAACAAAGCATCTTTCACACGCTTGT 592381 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================================================== ================== 29 36 98.9 32 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : AACAGGTCCGGGGGTTCGAATCCCTCTCTCTCCGCAGTAAAGGGTGTAAATCAAGTAGTTACGAGATTTACACCCTTTTTTACACCCAAAAATATCGAATGATTTTTATTCCTTCCTCACATTCTTCATATTTTTTCCCAGATTTATGGTTTTAAATTTTCAGATTGGCTCAGAACTAAGCTTTTGAGTTGGAAACCTCAATTCACACTTCACACAAAACACTAAAAATCAAATAATTAAAAATAAAATTCTTATTAATTTCCGCACGTGTTGTCCCAATAATATAAATTCAAAAACATAATTTGTAACACTTTTCACACAAAAACAGAAAAATAAAAACCTCCCGATGAAGTACATCGGGAGGTTTTGCGTTAAATAAAATGTTGTGATTACCCTTCAAATGCTTGCATTCATAAGTTCCTTTGAAAAAACAAATAAAATTTCACGAATAAAATGAGAGCAGTTCCAACGCTTGGTGTAAACCATACACAAATGACCCT # Right flank : CCTCAATGCTAAAAAATGAGTGTATAAAACTGTCTATCAGGAGTGTAATATCCTATATTTTACTTCATCAGTGCTTCTTTTTCCTTTTTAAATACCGCGGCAAAGTACTCGGCATAGGTTTTTTCTTTTTCTATCTTGCCATATTTTTCTTGGCAATAGTTCCAAAATTCTTTTTTAGGCAATTGGTTGTGTGCAAATTTATTACGAATATAGGTTAAAACAAAGGCTTTTTGTTCTAAATCGGTTGCTTCTTGTTTTAGTTGGTTAATGTCCACATCTTCAGGTTCAGTATTTAAGTTGAATACCTTATAGCTCTCCACATCTTCATTTTTAAGTTGCTTTAAAAGTCCGTTGAGAATGTAGTATTTGAAATTTTGATTACCCTCTTTTTTTAATATTTCCTTATCTTTTACCTTTTCCAAAATATACTCCTCTATAAGATGGACTTCCTTCAGCAGTTCTTCCCTTCTTACTTTTTCATATTGTTCTATTTCTCTTTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 172077-170799 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPJ01000006.1 Capnocytophaga stomatis strain 11058B-1 sequence06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 172076 47 100.0 30 ............................................... GAAAGAAGTTTCGGGGGCTGGTATCTCGGA 171999 47 100.0 30 ............................................... TCTGTATTTTCAATGGCTTTAATAAGATTA 171922 47 100.0 30 ............................................... TATTTCTCCATACGAGCAATCGCGTGGCGA 171845 47 100.0 30 ............................................... TATTTAATATACGCAATATATTTATATATT 171768 47 100.0 30 ............................................... GCTTTCGTTCGATTCGTACAGAAACTTACA 171691 47 100.0 30 ............................................... AATGCTTTCAGTTATAATTTCAATGAATTT 171614 47 100.0 30 ............................................... AAACCACAAAAATATAAAACTTTCTTAAAA 171537 47 100.0 30 ............................................... GGTGGGGTTGTTCACTCACAACATTTATTC 171460 47 100.0 30 ............................................... AAAGTCTTACATTTATTATCATTGCATCAC 171383 47 100.0 30 ............................................... TTTCCAACTCATTTTGTGGCGTAACCTATG 171306 47 100.0 30 ............................................... TTCAATGGTGTAAGAAAAATCCTGAACCCC 171229 47 100.0 30 ............................................... CCCATCGGCTCTGGTAAGTTGTCAACAACT 171152 47 100.0 30 ............................................... GAAGAGCAACAAAAGCAATTACAAATTCAG 171075 47 100.0 30 ............................................... ATTCAAAATTAAAGGATACATTTAACAATC 170998 47 100.0 30 ............................................... GGAAGTGCTATACACGTTTACGCTGGTAAT 170921 47 100.0 30 ............................................... GATGGATATGAACGAGATTATCATTTTAAA 170844 46 91.5 0 .....................................CG..-....T | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 99.5 30 GTTGTAACCAATCACAAAGTTACGAAAATTTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGATTTGCCAACCGAAACTAAGGCAATGCAAAAAGCAGCCAATCTCTTCCGAAAACGCTTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTTCATTCTAAAGTACGCGAAGATCCGCCACCTACTTTTCAGCAGCTCGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTATCCAATCCAGTTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAATAAAAATAATCCCCTGAAAAACAGGGGATTATTTTTTGAG # Right flank : AATTTTTGTCAATCTACAAATACTTTATATCTTCGCGTGGTTTTGGTGGGGAATTTGTATTTTCGTTAAAAATAATCGGAAAGGCACAGATTTAAAAAATGTAGAAAAATGTATTCAACAACTAAGGCAATTGTAATTTCAGCTTTGAAATATGGAGATAATAGCTTGATAGTTAAATGTTTTACCGAAGATTTGGGTGTTCGTTCGTACTTGCTTCAAGGCGTTTTATCCTCAAAAAAAACAACATTAAAACCAGCTCTTTTTCAGCCTTTTATGCAACTGGAATTGGTGGCAAGTAACAGAAACACAGCCTCTTTGGAACGCATCAAGGAAGCAAAAGTAACCAAAGTTTATCAGTCCATACACACAGATATTTACAAAAGTTCCGTAACAATGTTCTTAGCCGAAATTTGTTCTTTTGCCTGTGCTAATGAGTATGCAGAACCTGATTTGTATCAATTTTTAGAGGAAAAATTATGTTTTTTTGATGAAAATGATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACCAATCACAAAGTTACGAAAATTTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //