Array 1 162726-160561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLX01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462386, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162725 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162664 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162603 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162542 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162481 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162420 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162359 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162298 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162237 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162176 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162115 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162054 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 161993 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 161932 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 161871 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 161810 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 161749 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161688 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161627 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161566 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161505 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161444 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161383 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161322 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161261 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161200 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161139 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161078 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161017 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 160956 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160895 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160834 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160773 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160712 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160651 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160590 29 93.1 0 A...........T................ | A [160563] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180848-179233 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLX01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462386, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180847 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 180786 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 180725 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180664 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180603 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180542 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180481 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180420 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180359 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180298 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180237 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180176 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180115 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180054 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 179993 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 179932 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 179871 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179810 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179749 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179687 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179626 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179565 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179504 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179443 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179382 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179321 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179260 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //