Array 1 44747-43742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMQ010000106.1 Chromobacterium vaccinii strain A8 Contig_106_40.4076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44746 29 100.0 32 ............................. ACGACTGCACCATCACCCAACTCGCCCACGTA 44685 29 100.0 32 ............................. TACCTTTACGAGGTAGGGCCGCTAGGTGTGTC 44624 29 100.0 32 ............................. TTCAGAGTAACGACAATGAGCAGGAACCAGCG 44563 29 100.0 32 ............................. CACATCGACGCCATCATGCCGCTGGTGCTGTC 44502 29 100.0 32 ............................. TCATCATGGCCGACAATTGGGACTGGGAAGAC 44441 29 100.0 32 ............................. CATCCAGCCGCGATATGCGGGACATCGCCAAC 44380 29 100.0 32 ............................. CACCCGCCCAGCGCCGACGAGTTCGCCCTGGC 44319 29 100.0 32 ............................. GGCTTCAAAACGCCAACCTGCAGAACACTGCC 44258 29 100.0 32 ............................. CCGCTGACAGCGGCCAAGTTGGCTGCCTACGT 44197 29 100.0 32 ............................. TTGAGACATGAAACTGACCGCCCAAATGAAAC 44136 29 96.6 32 .........................G... TCAACTCGTTACGGACGATGATAGCAAAAAGC 44075 29 100.0 32 ............................. CCGTTCGTCACCGGCGAGCCGTTCGAGATGGT 44014 29 100.0 32 ............................. GTTTGTTCCGTTGCCGGGATATCGCTGTCGGA 43953 29 96.6 32 ...........C................. CTTTCTGTGGGCAATATTGCGACGCTGCCGGA 43892 29 100.0 32 ............................. CGGCGCGCCGTGCGTGGCGGAGCCATCCGCCC 43831 29 96.6 32 ..........T.................. ACCCTTCCTCCGGCCTCGGGTGATGTTGCAAA 43770 29 93.1 0 ..A.....................C.... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGTTGCTGGAAATCCGCGCCGGGGTCTACGTTGGAAACTACAACCGCAAGATCCGCGATTACCTATGGCAGCAGGTGGAGGACGGGTTGGAAGATGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTGGGTGCCAACCGCCGCATGCCGGCAGAGTTCGACGGCGCGAAATTGGTGTCTTTTCTGCCGCCACCGGTACCGGAAGAGAGCAGTGAATAGCATGAGGATCGCTTTGTGCCAGGGGGCAATTTGGCTCTTTGAAAATCGGTAGATTTTTAGGTGGCGTTTTTGTTTTTCAAAATCAATTGCTTGCAATTGGT # Right flank : GATGCCGCTGTCAGCTACGCGCCGATTTTTACCTGTGAACCGCAGTCCCGCCACCCGCTAAAGACCGCATGCGCGCGCGCCACGCATGGAAAGGTTTGTCATCCAATCTTTCCGCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAAGCTGGAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCGTTGTTTCGAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTCTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGTTGATCTCCCCCCGCTGGCGCTGGCCGGCCATCCTCGCCGGCGTGTGGCTGGGGTCGGTGATCTGGGGCATGGTTGCGCATGGCCTGAGTCCGGCGGGGGCGGCGGCTTTCGCCAGCATCGAGGTGGTCAGCGGCGCCATGGGCTGCTGGGTGGCCAGCCTGGGGCGCAACGATCCGGATACCCCGGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 54294-53594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMQ010000106.1 Chromobacterium vaccinii strain A8 Contig_106_40.4076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54293 29 100.0 32 ............................. CAGGAACAGTTGGCACGCAAGGCCGGCATCGG 54232 29 100.0 32 ............................. GCCAGCTGCTACGGCATCATGAGCCAGATCGA 54171 29 100.0 32 ............................. GTTGGCAGCTGCTCGGCGCAAAGCCGAAACAA 54110 29 100.0 32 ............................. ATGGATGAGCGCGAAACCTGGAAAGAGACGCA 54049 29 100.0 32 ............................. CTCATGGTCAAGCCCAAGCCTGCTGAGCGTCG 53988 29 100.0 32 ............................. AGGCCGAGTTCTGGGATCGCGTGCAGTCTGGC 53927 29 100.0 32 ............................. GTCCTCGGCGACCTGCAAAAGCACACGGCCCT 53866 29 100.0 32 ............................. AACGCGCCTACGCCGAGATCTACAACGACCTG 53805 29 100.0 32 ............................. TCGGGATCAGCCCAGCACGTACCGCCGAGTAT 53744 29 100.0 32 ............................. CTAGGGGAGCGCGTCGCGGTATGGCTGGAGAG 53683 29 100.0 32 ............................. CCGGCATGTCCCGCGCTCTTGCTCGGGCCATT 53622 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGAGCCTTCCGCCCCTTGCACCAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAATGCCGAACATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCTCCGCGCCGGCCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGTCAGTCGTCCAGGCTGCTGCCAGTGGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGAGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTAGGGTGGGTTTTTATCTTTAGAAATCAGCATCTTGAGATTGGT # Right flank : GCGGTATGCACATTTGCGTCCGGTTTGGTTGTGTGTTTCCCACGCCCCTGGCTCGAGAAAAGACGTGGCTTTCTTTATGGGTAGTGATACGGGATTTCAAAAATATGGGGATTGAAGCGTGGGCGATGGTTGTGGGAATCGTCAGGCCAAACGGCAGGTACAACTCTCGACCCTGCAAGTTGCTGCCTAGAGAAGTTTCATGGCATGAGTTATGTCAATATTCTTATTGACTAAAATGACAATGTGCTTTTGGGCTGATAGCCTGCGCGCTTGGGTTGGTTCCAGTTGGCAGATCGGTTTTCACTGGGAGAGGCGATGCAGACAGAGTTGGACGGCAAAAAAGAGGTTCATGAACCCTCCAGTGTAACCGGACTAAGTTTTGATGATCTGCACCCCGCGGTCCGACAGCTATGGGCCAAAAGCGGTGACCCGACTGGCCATGGCCTGTTATGTCACATGCTGGACGTGGCTGCGGTGACCAGAGCTTTGCTCGACTACTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 61889-61554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMQ010000106.1 Chromobacterium vaccinii strain A8 Contig_106_40.4076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61888 29 100.0 32 ............................. TTGTGCGCCACGCCTGGCTGCGGTGCGCTGGT 61827 29 100.0 32 ............................. CACCTTCGCTGCTGGTGGGCTTGTATGTGTCC 61766 29 100.0 33 ............................. CGCGAACGTCGGGGCAGCGGTGTACGCGCCGCC 61704 29 100.0 32 ............................. CCGAGCTAATGCTGGCCGACACTGAATGCGCC 61643 29 96.6 32 ..............T.............. CAAGAGATCACCGGCGCCAATGATGGTCCGCT 61582 29 82.8 0 ..............T..........TTGA | ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : GCCAGGATGCGCGCCAGCGTAGTCTTGCCGACGCCGGGCGGACCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCGAGGCTCAGCGGCTTGCCTGAACCGATCAGATGTTGCTGGCCGATCACCTGATCGAGCGCCTTCGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGAATGGAGCGGAGAAACAGTATACCAGTTGGGGGCGGGCATGAAAAAAGCGCCAGACAGACGCTTTTTGCTTGCATGTCGATGGAATGACGGTAGGCTATGGAGCCTGGAAACCTTGCCGTGCAAGCTCCGTGCTTCGTTTTTCGAAATGATGGCGAAGGGAAGATTTCCTGATGCCGTGTGGCGCTTGGCGGGACGATTTGAGCGGCGGTTTTCGACCAGAAAAATCGGTAGAATTTTGAGGTGGTTTTTTATCTTTAAAAATCAGCAGTTTGAAAATGGT # Right flank : CGGGCGCGGGCTGGAATGGTGTCGCGGCGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCAACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTAACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTATCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACCACGTCGAACTTGTCGTCCGCGCGGTATAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //