Array 1 82401-82168 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKAW01000005.1 Lactobacillus helveticus strain LBGT 196 seq5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 82400 32 100.0 34 ................................ AACACCATACTCCGTCCGCAGATAGTCACGTGTG 82334 32 96.9 35 ...................T............ AAGGGTTTAGTACAACAAGGCTTGCTTAGCACTGA 82267 32 100.0 36 ................................ GATAATCAGAAGGATTATGACGATACCTTAATCATA 82199 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 99.2 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAAAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCAAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGTA # Right flank : TTTAGGTCCATTGCGCTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAGTCGATGAGATGAAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCAGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10828-10677 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKAW01000024.1 Lactobacillus helveticus strain LBGT 196 seq24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10827 29 100.0 32 ............................. AAGGTGCCACCTCATTACTACTAGAACTAGAA 10766 29 96.6 32 ............................C TGCATTGATTCCTGCGTCTCTGAAAGCTTGAG 10705 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 89.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : CGCTGGCGAATATGCTGTAAACCATCTAAAAGCTAATTGGAATGAAAATGCGCTTAAATGTGCTAAGACTTATCAAAAGGAAGAGCATCTCTCACGTGCAGATGTGCAAAGTCAGCTTAGTTCAAGCATTGACGATGGTGGCGAAGGATTTACCTCAGAACAAGTGCAATATGCTATGTCTCATCTAGAAGATTAAAAAATAAGCCTGCTCACCTCAGGTGTGTAGGCTTTAATTATTCATTTAAAAAGAACATAGGTTTTGATTTATAGGAGTGATTGGATGGCTTATATCAAAAAACGCGGTAAAAAATGGCAAGCACAAGTTTCGTGGTATGACATGCATAATGATCGCCAATACAAAACCAAAAGTGGGTTCTTGACCAAACGCCAAGCACAGGAATGGGCTAATAAAATGGAGGTAGCAAAGGATGAACAACACATATCTAATCGCGACCCTATTTTTGCGGAGTATTTCAAAGACTGGTATACAACTTATAAGA # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCGACATCAACGTTTTTTACTTCTGGCACTTTTTTAATTGCTTGAGTAATATTGTCAATTAAGTAACCAGTTAACGGACAGGCAGGGGTAGTTAAAGTCATATTGATTAAGCAAATTCCGTCTTTGTCCAAATCGATTTCATAAATTAGTCCTAAGTTAACAACATCAACGTTCAATTCAGGATCAATGACCGTCGCTAGCTGATTGATAATATCATTTTTAATTGTTTCACCATCACGCATTTTATCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCAGTTGGAGTGCCAGCTAAGCCGCCGATTCCAGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCAGCTGGGATCATG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.38%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14645-14372 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKAW01000024.1 Lactobacillus helveticus strain LBGT 196 seq24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14644 29 93.1 32 ...................G........T TAGCCAATCCGTGTTAGCATTTAAACTCTCAG 14583 29 96.6 32 ....................A........ TTGTTTATTATGCATAAGGCAATAAGGGTGTT 14522 29 93.1 32 ...........A................T ATGTATAAACTACTGCTTGCATCCCTGAAGCT 14461 29 100.0 32 ............................. TCTTAACTGGGGTGTCGCAAGCTATAGCGATG 14400 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : TGCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGGGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCTACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTGGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AACCGTAACTGTAGTTACACTTGTAAAATCTTGCTCTTTTTCAAAGTTCTCGAAATTTTGATCTACCCATTTACTAAAACGGGTTGTAAGCCCCAAGTTTTTATGAAGTTCTCTTGCTGAAACTAACTGATTATTATTTTTAACTTGAATATTAATTAATGGACTCATATTGATCCCTCATTTTTCTATCACAATACGTGATTTTATCAGCAAAAAAATAGATTCAACTGACTGACCATAAAAGTTGGCAATCTTAATTTTAACTGTGTCACTTCCTGATCTATGCCCTTGCTCTAATGCTGATAACATAGACTGACTAATACCTATTTTATCCGCAGCCTCTTTTTGATTTAAGCCGCGCTCAATGCGCAACTTAATTAGTCTTGTGTTCATCGTCGCACCTCCTTATCTCGATCGGTGATTGTATAATATATCACGTTTGGTGATATGTAAGCACTAATCGTGATATTTATAAAATAATATCACTATCAGTGATATTA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //