Array 1 6697-3005 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIXJ01000003.1 Rhodocyclus tenuis strain DSM 110 NODE_3_length_305169_cov_44.3155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6696 28 100.0 32 ............................ CCACGCAGAATTGGGGCACGCCCGACTATTAC 6636 28 100.0 32 ............................ GTTCGGCGCGAATTGTCGGCTCAAGGGCGCGC 6576 28 100.0 32 ............................ TTGATGCCGACCGTCATTACCGTCTGCGGCCC 6516 28 100.0 32 ............................ GCGTGGAGTTGAACGAACCCTGATTGAGATCC 6456 28 100.0 32 ............................ ACATTGGCGCAAATTAGGTTAGAAATATGCAA 6396 28 100.0 32 ............................ GACCAACAATTACGTCCGTCTGATGGCTCAGA 6336 28 100.0 32 ............................ ACGGATTCAAGCGTGATGCCCTGACCTTCTAC 6276 28 100.0 32 ............................ ATAAGACAGAAGCGAACAAACCGTTCGCCACC 6216 28 100.0 32 ............................ AATTCGAGCCGGCGTCACCGTCGGGACGCTTA 6156 28 100.0 33 ............................ CGTCGTGAGTTGGTCTCTCGCCGGCGACCGCGA 6095 28 100.0 32 ............................ TGGGAGCGAACCGTCACTTCGACATGGCGACA 6035 28 100.0 32 ............................ GCCCGCCGATCTGCTGGCGCATGTGGCCGGCG 5975 28 100.0 32 ............................ GATTGAGCAGACGCGGTGCGCGATGGCTAAGG 5915 28 100.0 32 ............................ TGTCAGGTCCGGGCAAAGGGCGGATGCTTCGG 5855 28 100.0 32 ............................ TGTTATGGAGTTCGGAAAATGATTATCGACGG 5795 28 100.0 32 ............................ AGTCTGTGCAGCCTCGTTCAGATCAAAGAGGT 5735 28 100.0 32 ............................ ACTCAAACGCGCTATTCCACGCTTCGAGCAGC 5675 28 100.0 32 ............................ CTCACAGACGGGGCAGGAGGGGCACGGGTCGC 5615 28 100.0 32 ............................ TCGCGCGGCTGAATGAGCGTGCCTTTCCGCGC 5555 28 100.0 32 ............................ TTGGCGACCGCGACGAAATCGCCGCCGCCGTC 5495 28 100.0 32 ............................ GGTCGGGCGCCCCGTGCGGGCACCGTGATAGT 5435 28 100.0 32 ............................ CGGCGCTGCCCCTGCGGCTCCGGGCTTGCCGT 5375 28 100.0 32 ............................ GCTTATGTCGGCGTCGCCGCCCGCTACGACAA 5315 28 100.0 33 ............................ GCATACGTGACGGCCGCCGCGACGGGCACGGGC 5254 28 100.0 32 ............................ TCCGCCGCCTCAACTTGTGTGGCTGCCTCGGC 5194 28 100.0 32 ............................ TCCCTGACGGAACGCTGAATCCGGACGTAAAT 5134 28 100.0 32 ............................ ATAAAGACAGGCCAGGGCAACGCGACTTACGC 5074 28 100.0 32 ............................ ACCTTGGCCAACGCGCGCTCATGCTCCGGTAT 5014 28 100.0 33 ............................ AATCCGGGGCGTGGTCTAAGTCAGGCGGATTGA 4953 28 100.0 32 ............................ TCGAACATCGCTTTGATGTCGTCGACTTTTGC 4893 28 100.0 32 ............................ AATCCGGGGCGTGGCGTAAAGCAGCCGGTTCC 4833 28 100.0 33 ............................ CCGGCGGGGGGCCAGGTCGGGTGAAGTCGAAAT 4772 28 100.0 32 ............................ AAGCGGGCGATGATTTTTTACACCGACGTTGC 4712 28 100.0 32 ............................ GCAAGCGTCCTTGTCCTCCTTGTGCGGGCTAT 4652 28 100.0 32 ............................ ACATGGGCGCAGGATTCGAATAACTCCGAAGA 4592 28 100.0 32 ............................ TATCGAAGTCAGCGTTGTGCGCCACGACTGTC 4532 28 100.0 32 ............................ TTTCGGAAGTCGGCTTTGACCCATCGGGGCGC 4472 28 100.0 32 ............................ AAGCCTGACGCCGAGATTATCGCGCTCGGCGG 4412 28 100.0 32 ............................ AAGAAGCAGAAATGCCCAAGGTGCCGCGACTC 4352 28 100.0 32 ............................ GTGCCGAAGAAATTGCCGCCGCAGATCTCTTC 4292 28 100.0 32 ............................ CCTCCCTGCTCGGCGACGCGAACGCGGTAGCC 4232 28 100.0 32 ............................ TGCACGGCACCCCCGACCGTAGAGGCAACCCC 4172 28 100.0 32 ............................ TTTTCTCGGTTCGCGCAGCGTTTCGGGCGGGG 4112 28 100.0 32 ............................ TCGTCGTCAATGGCGCAACCGCAGCCCCCGAC 4052 28 100.0 32 ............................ TGTCCGGGCAGCAGAATGATGTGAGTGACGGC 3992 28 100.0 32 ............................ TGACAAAATCAGGCTTTACGCTCCAGCCTGGC 3932 28 100.0 32 ............................ ATTTCGGCCCAAGCGTGGCGGCAATGTCATTA 3872 28 100.0 32 ............................ TCATCCGGCCCGACGCCGCGCCGCGCCCGCCA 3812 28 100.0 32 ............................ CAATCAAAAAGCCAAGCGGTGTAAGCGTCCCC 3752 28 100.0 32 ............................ TCGACGGCTGCCGCCTCATCGCCGAAGTAGCC 3692 28 100.0 32 ............................ TACACCAAGATCATCGACGGGCTGCGCAAGAC 3632 28 100.0 32 ............................ TGTTCGGTAAAAGTCATGCTTCGATTCCCTCG 3572 28 100.0 32 ............................ AGCAAGAGCAAGCGCCCGAGTTCTGCCGGTAG 3512 28 100.0 32 ............................ ACGAGCGGCAGCAGGCACAGCACGCGCTCCGC 3452 28 100.0 32 ............................ TTGCGCGCAATCTGGTCGCGCGTAACGCGGTT 3392 28 100.0 32 ............................ GTCTCGCCGGTCAGCGCCATGCGGATGGCCTC 3332 28 100.0 32 ............................ ACATACGGCTTAGTTTCGGGGTCGCTGACGAG 3272 28 100.0 32 ............................ CAACCCGTTGTACCTACAAGGCATGCGTCGTG 3212 28 100.0 32 ............................ TGACGCCCACACAGCGCCGCAAGCTTGAAAAG 3152 28 96.4 32 ...................A........ TGGAGCAAAGTTGACCACCACAACATTGGTGC 3092 28 100.0 32 ............................ GATCCGATCCTGCCCCCTACATCCCATGTCGT 3032 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 62 28 99.9 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : AAGACCTCAGTGCGCTGATAGCTGTGGACTGGATGCTGGCCTTGCGCGATCACGTGATCGTCAGTCCAATCGCCGCAATTCCCGCTCATGCAAAAGCACGAACCTTGCGCCGCGTGCAGGCCAAGAGCAGTCCCGAGCGGCTGCGCCGCCGACAGATGCGGCGGCACGGATTCACCGAAGAGGAGGTCGTGCAACGCATCCCCGACACGGCGACCGAGATGCTGCGCTTGCCCTACTTGCATCTCGCGAGCGCCAGTACCGGGCAGAAATTTCGCCTTTTCCTGCGCTTGGGGGAGCCGCAGTCGAGCAACGTGAGCGGCGAGTTCAACACCTACGGTTTGAGTACCACCGCAACCATCCCTTGGTTCTGACCCTTTTTTAAACCTTCCGCGCAACTTCATGATTTTTCGTGGAGTTGCGCACTTTTTTTTGCGAGGGTGAAAATAGGGGATGTTGGCGATAACACAAGTAAGACAAGCACTTGGATTTTCAACTGGCTA # Right flank : CGCTTGCGCCTGACGCCCGCCGACGTGCCGGAGTGAATCGCCCCGGAAATCGCGGAGGCCATTTGGTTTGAGTCAGGGGTGAGGACCTGCTCACGGTGACTGCGGTAATAGAGTGCCTCAGCTTCGGCAGGAGGAATATAGCCGATGTGCTCAAGCAATCGATGATGATTGAACCATGAGACCCATTCGAGCGTGGCGAGCTCGACGGATTCCTTGTGCTTCCATGGCCCGCGGCGGTGGATTACCTCGGCCTTGTATAGGCCGTTGATGGTCTCGGCCAGCGCGTTGTCGTAGCTGTCGCCCTTGCTGCCCACCGAAGGCTCGATGCCGGCTTCCGCCAGTCGCTCGGAGTAGCGAATCGAGACGTACTGAGCGCCGCGGTCGCTGTGATGGATCAGCGTATTGCGGTCTGGCTGTCGGGCATACAGCGCCTGCTCCAGGGCATCAAGAACGAAATCGGTATGCATGCTGCGGCTGACCCGCCAGCCGACGATGAAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //