Array 1 257-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGE01000084.1 Escherichia coli strain M27 M27_BDMS190049462-1a_1.clean_(paired)_contig_84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 256 20 69.0 32 ---------.................... TGCGATGAGCTGAAGTGCCCAACAGATCTTCA 204 29 96.6 32 ........A.................... AACACGTAAAAAAGATAAAAGAAAAATTAAAG 143 29 100.0 32 ............................. TTCACCAAACAGCAGTGCCCATCTGATATTCA 82 29 86.2 0 ...............T........TG..C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 88.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CACGTGTGTCCCGTCACCACGTGCTCCGGCTATGTGGTCCCCGCGCCAGCGGGG # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52972-54404 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGE01000018.1 Escherichia coli strain M27 M27_BDMS190049462-1a_1.clean_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52972 29 100.0 32 ............................. TGATTTATCTGGAAGACTCTACTACTAACAGT 53033 29 100.0 32 ............................. GTGGTAAGAAGTGGATCTTTAACATCATCGGT 53094 29 100.0 32 ............................. CCTGGCTACGGCAGGCGTTAATTAATAATCCG 53155 29 100.0 32 ............................. CAATTTTGGCAAGTTGCGATACCCAGGAACAA 53216 29 100.0 32 ............................. AATGCGTGTCTGCCGCTGCTGAGTTTTGCTGG 53277 29 100.0 33 ............................. CATTCATTACCGAAAATGATATAGGTCAATGAA 53339 29 100.0 32 ............................. ATCCGCAACAGTGATGTAACGCTGATTACTGA 53400 29 100.0 32 ............................. GAAATTTCGGAAATTAAATCCGCTCGCGATCG 53461 29 100.0 32 ............................. ACGGTCCACGGCTCACAGGATCCGTGTGTAAA 53522 29 100.0 32 ............................. AGCATCTTCAATAGTGATTTTGATACCCTCGG 53583 29 100.0 32 ............................. TATTAAATGTTAAATATTCCGACCCGCCTCAC 53644 29 100.0 32 ............................. CCCCCAACGACTAAACGCAGCCTCGATTGCCA 53705 29 100.0 32 ............................. CGTTCTTCAAACGCCACCTGGTCAGTGAGTGC 53766 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 53827 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 53888 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 53949 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 54010 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 54071 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 54132 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 54193 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 54254 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 54315 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 54376 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATATAAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80106-82393 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGE01000018.1 Escherichia coli strain M27 M27_BDMS190049462-1a_1.clean_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80106 29 100.0 32 ............................. ACCAGATCGCACTGACTGATAATGGTGAACAA 80167 29 100.0 32 ............................. TTTACGCCTATTTTTGCATAAGGTGAGCCAGC 80228 29 100.0 32 ............................. CTCGGGCTGCACATTGACAACGTAGATCCGCC 80289 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCTGTCA 80350 29 100.0 32 ............................. TCGAGACTAGCAACACGATTCGATGCGGTGAG 80411 29 100.0 32 ............................. CGTCTGCTTTCGTTGGTGTGGTTGTCCGTGCA 80472 29 100.0 32 ............................. CGCGCGGGCAGCTCCCTCCGCTCCCTCCTGCG 80533 29 100.0 32 ............................. ACACACCAAAATATTCTGGTGTTTGTTAAGGG 80594 29 100.0 33 ............................. AAATCCAAAAAACTGGGGTATGGTGGCGTGTGG 80656 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 80717 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 80778 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 80839 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 80900 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 80961 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 81022 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 81084 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 81145 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 81206 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 81267 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 81328 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 81389 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 81450 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 81511 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 81572 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 81633 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 81694 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 81755 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 81816 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 81877 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 81938 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 81999 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 82060 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 82121 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 82182 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 82243 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 82304 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 82365 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //