Array 1 3407043-3410012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033713.1 Yersinia pseudotuberculosis strain FDAARGOS_581 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3407043 28 100.0 32 ............................ AATTGAATATAGAAAAGAATTCGAAGCTAGAT 3407103 28 100.0 32 ............................ AATGTGCCAGCCATGCCGGCACAGCGTGGCAC 3407163 28 100.0 32 ............................ ACGTCGCGCAACGCAAGCGAGCCAGCGCACCG 3407223 28 100.0 32 ............................ GATGCCGGTGCTATCAATGCCGATGTGGGTAA 3407283 28 100.0 32 ............................ ATACACGTATCGGAACTCTAATGGGGCACGAT 3407343 28 100.0 32 ............................ CGCTGAATCCGTGCAGTTGGTCCCCGCGTTGT 3407403 28 100.0 32 ............................ AAATGGCCTGGCGGCTTTGGGGTCGTGGCCTT 3407463 28 100.0 32 ............................ ATATTCATGACAAAACCGGCGTCATTAACTAA 3407523 28 100.0 32 ............................ TTGCTAACATTCGCACCATTAGAACTTTTGTT 3407583 28 100.0 32 ............................ TCCGGTCAACGCCACGGGTTGCTACATAATTA 3407643 28 100.0 33 ............................ TTATTTAATTGGAATGGGTGGGGCTTCATGGGC 3407704 28 100.0 32 ............................ TATGTCGGATAGTAACGTCGAGGGGTTCCGAT 3407764 28 100.0 32 ............................ TTGCACCGTTTCTAGATTTAATGCTTTTAATG 3407824 28 100.0 32 ............................ ACGCTAATCTCTTGCATAGTATCACCGAAGGG 3407884 28 100.0 32 ............................ AGCTTCTTCGTGACTCATCCCGCCGCCGACAT 3407944 28 100.0 32 ............................ TAACTCTTGGCGGTCTTCACGGATAGCAAAAT 3408004 28 100.0 32 ............................ AATAAGTATGCATAGCCTCAACCGCCAGTTCC 3408064 28 100.0 32 ............................ AGCCCGGACGCGATAGCGATCAATTCCAGCTC 3408124 28 100.0 32 ............................ TCCTCGCGACAGCGAGGAGGAGGAGGGAGAGC 3408184 28 100.0 32 ............................ TTTGGTGTCTCAGAGATGACAATTAACAACTG 3408244 28 100.0 32 ............................ TGAAATATGGCGTGATAAGCCGGAAGCGCAGG 3408304 28 100.0 32 ............................ TCGAAGAGTGCATACAACGCGGTGATGATATG 3408364 28 100.0 32 ............................ TAAATTTGAACAGGTAAATGGCCGGAGTTATG 3408424 28 100.0 32 ............................ TGACTGCATGAAATCATCAAGTATTCCATCTA 3408484 28 100.0 32 ............................ AACGATCACCAACTTTAAACATGTGAAATTTT 3408544 28 100.0 32 ............................ CCGGAGCGGTACCTCGTTAGCCCGGAGGATAC 3408604 28 100.0 32 ............................ AGAATTACAAACGGCTTATAACACAGCCATAG 3408664 28 100.0 32 ............................ TGCAACTAAACAAGTTATTGAGGGATATATGG 3408724 28 100.0 33 ............................ TGAGAACCAGATAAATCCTCACCTAAATTTGTT 3408785 28 100.0 32 ............................ TATTCCCGCTAAGTTAGTCCCTGTATTTGCAA 3408845 28 100.0 31 ............................ GCAACTAAAGAAGTTATAGAGTCATATATGG 3408904 28 100.0 32 ............................ CTAGTGTAATAGCTAATAACACGTCTGGTATT 3408964 28 100.0 32 ............................ AAGAACCCGTCAGGGATTGACAAGAAAGCAGC 3409024 28 100.0 32 ............................ GAGATTAATTGTATCGTAATAACTAGCCACGT 3409084 28 100.0 32 ............................ ATGAAGCGCCAGCGCCACCCATTAATAACGGT 3409144 28 96.4 32 A........................... GCCTCGCTGATGGAGGAAAAGGTCGAAAAAAC 3409204 28 100.0 32 ............................ CGCGTCTTGCGCATTCAGCCCGATCCCTTTCA 3409264 28 100.0 32 ............................ GTTGATACCTTGTTTAAATTCAACGGTCTTTA 3409324 28 100.0 32 ............................ GGATGCCATCGACTGCGAGTGAGCGTAAGCGC 3409384 28 100.0 33 ............................ AATTAGTTCGCGAACATCACTCTCAGATAAAAT 3409445 28 100.0 32 ............................ TTACAAAAGGTTGTCACTGATGACCGTCGAAT 3409505 28 100.0 32 ............................ TGCTTGCAGACCCTTGAGTAACAGCGCCCCCT 3409565 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 3409625 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 3409685 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 3409745 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 3409805 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 3409865 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 3409925 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 3409985 27 85.7 0 ...................-A.A.C... | T [3410009] ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4422458-4421590 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033713.1 Yersinia pseudotuberculosis strain FDAARGOS_581 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4422457 28 100.0 32 ............................ CTTCAAAGGACATACCAGACTTGTGGCAAGAT 4422397 28 100.0 32 ............................ TCGTAAATCATTAATTAACATTCGATCTATAT 4422337 28 100.0 32 ............................ GTAGCTGCCGCGCTCCATCGTTCGATTGAATT 4422277 28 100.0 32 ............................ CTACTCCGAAACTACAGAGTGTGATTACATTT 4422217 28 100.0 32 ............................ GTGATGGGTAAAGTTACGGCATCAGGTGAGTA 4422157 28 100.0 32 ............................ AATCTGACCAGACATAGATGTATGTGCCCAAC 4422097 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 4422037 28 100.0 32 ............................ ACGAGCGCCGCAGCTACAGCGTTGAAGAGTTA 4421977 28 100.0 32 ............................ TACGCAGCAGCAAGACCATTAGCAGCGGTTCT 4421917 28 100.0 32 ............................ TATGACTTTTCATCGCAGCGATACACTCAGTT 4421857 28 100.0 32 ............................ GATCTCGCCGTCCAATAGCTCGATAATTGAAC 4421797 28 100.0 32 ............................ ATGTTTGCTGACGTGCCGATTGAATAGTCACC 4421737 28 100.0 32 ............................ AACTTGAAACCTTCCCAGCAGTGACACTGGAT 4421677 28 96.4 32 A........................... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 4421617 27 89.3 0 .....................CC.-... | T [4421592] ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGCAACCAGAAACAAACTGGTACAGCAGGCAGTGGAGAGGGTGAATCCCTATTTTAATAAATAATATTAAGGGGCAATATCGGCCCTATTTAAATATATTTTTTATAACAACGAACAGAACCAGCAACATAATAAATCCGATGATCCCAAAAATAATACTAGTGTTACTGTCCATATGCATATTGCCTTTACCGGCCAATAGGTAAGCAGCAACGACAAAGGGAATGCAGAGAGCGGGGTGGATGGTGATCATCACGGCAGCGAGAATTAGGCATACTATAAAGATTGTAGATGTCATCGATCTCTCGTTTTGAGTTGAATTTCAGGGGCAATTTAGGGGCAAATTACAAGTTCAGGGGCACAAAAAAGGGCAGTAAACAGGTAAGTTACGGTGGCTTAAGGTTGATAGCGTTAGCTTGCAACACATTGAAATAAAATAATAAGATATGAAATTCAAATACTTTCATTTCATTGTGTAGCTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAACAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //