Array 1 534160-540461 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009575.1 Listeria ivanovii subsp. londoniensis strain WSLC 30167 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 534160 36 100.0 30 .................................... TTACAGAAAAGAATGGGCACTGGAACGCCT 534226 36 100.0 30 .................................... TAATGTTTCAGAAGCTTTATTTATCTCTCT 534292 36 100.0 30 .................................... CACTCCGCGGAGGTTTAGAAACGGGCGCTA 534358 36 100.0 30 .................................... AGGCGGGGATAGAAATGCGACTTATGCATA 534424 36 100.0 30 .................................... CTTGTTGATGTTATCCCTGTTAGTAGAATA 534490 36 100.0 30 .................................... TCAAGAAGCGACAACACTTGCAGCACATAT 534556 36 100.0 30 .................................... AATCTAAGAAAAGACATCATTGCTTATTCG 534622 36 100.0 30 .................................... TGTCAATTTGTGGTAGTTCGAACAGCGCCA 534688 36 100.0 31 .................................... GCAGATGGGAATCGAACAACAACGCCCGCCG 534755 36 100.0 30 .................................... ATCTGCTATTTTTGGGTCTCTCGGAGAAGA 534821 36 100.0 30 .................................... ACTTTATCTAATCTTAAAATTTGATGATTA 534887 36 100.0 30 .................................... CTTTACGCAATGGTCTAGATACAGGTGCAG 534953 36 100.0 30 .................................... ATTGTCACGAGTGAACTTTGTAATGGCTTT 535019 36 100.0 30 .................................... CTATACGATAGCATGGACGGTAATTTAGTA 535085 36 100.0 30 .................................... TCTTTTAACTTTGCGTATACTGCAACAGCG 535151 36 100.0 30 .................................... TCTTTTAACTTTGCGTATACTGCAACAGCG 535217 36 100.0 30 .................................... TCTTTTAACTTTGCGTATACTGCAACAGCG 535283 36 100.0 30 .................................... TCTGGAAATATGACAACGTGGGTGCTGTAA 535349 36 100.0 30 .................................... TATACGCTGTTTTAGAGTCCCAGTCAGGCG 535415 36 100.0 30 .................................... CAATGTGAAGCGACTGAAACAGTCACTACA 535481 36 100.0 30 .................................... ATCAGTAACGTTGCACAAGCTACGTCATAC 535547 36 100.0 30 .................................... TGAAACAATGTAATATATATTGAGTAACAA 535613 36 100.0 30 .................................... TTCGCAGTCAATACTTGGCAAACAAATGGG 535679 36 100.0 29 .................................... GAATATCCAACATTTTCATACATGATAGA 535744 36 100.0 30 .................................... ACGTCGTAGTGACGATGACTATTTAATACA 535810 36 100.0 29 .................................... GACTCCGCTGCTTTTATGGTTGATACAAA 535875 36 100.0 30 .................................... CTAAGACGGTTCTAAAAGGACAAGAAGCAG 535941 36 100.0 30 .................................... GTATTTCTTCGCCAAGTTGCGACACTCTAT 536007 36 100.0 30 .................................... ATATCCGTGCGCTTAAAGCATTGTGTGCGT 536073 36 100.0 30 .................................... GCGGTCGAACCAGAACATTCGACTACCGCA 536139 36 100.0 32 .................................... AATATTTGTTTTTGATTGTATCGCTATCTAAG 536207 36 100.0 30 .................................... GCATTGTATTGCGTTTATATCAAACATCAA 536273 36 100.0 29 .................................... AATTTAAGAAGTTGATACGAGCGTACGAT 536338 36 100.0 30 .................................... TCTTTTCTGGAACATATGCTGGTAAAACTA 536404 36 100.0 30 .................................... AGGGACTAGCGATAGTGAGCAAGCGAAGGA 536470 36 100.0 30 .................................... AAATACAACGCGCAAAGCGTACGGACTAGA 536536 36 100.0 30 .................................... GCTCACTTGTCAATTTAGTTGATTGACTGT 536602 36 100.0 30 .................................... AAAAAGAATTGATGGAAAAGGAAGTTAATG 536668 36 100.0 29 .................................... AATGAAGAATAACGCTGCTATCATCGCAA 536733 36 100.0 30 .................................... AGCTATCCAGCTGCCGAACGGAAAGGACTA 536799 36 100.0 30 .................................... AGCAAAAACAGCGTTGGTTGGTTGTAAAAT 536865 36 100.0 30 .................................... TTTATAGATGAAAACGGAACGTTTAGACAT 536931 36 100.0 29 .................................... AGAACTTCAAGCTTTGCTTGACAACGCAA 536996 36 100.0 30 .................................... ATATAAAGGATATTGGTGGGTTTGTAGGTG 537062 36 100.0 30 .................................... AATGTCAATAAAAGTCTGTCCCTTCCCTTT 537128 36 100.0 29 .................................... ACCAGCTTTTATTTTAGAACCCTGCCCAT 537193 36 100.0 30 .................................... AATCTAATGACTGGAACAAGAAGCTTGAAC 537259 36 100.0 30 .................................... AATATGCAAGTTTTCAACCGCTTCATCCTT 537325 36 100.0 30 .................................... CTGTATAAACAAGAGCTTGTAACAGTCGAG 537391 36 100.0 31 .................................... CTTGCATTTCTTGCTACCTTTCCGCGAATTA 537458 36 100.0 30 .................................... AATAGATATTATGAAAGTTTTTTCAAGTGA 537524 36 100.0 30 .................................... TAACAGCTATCAATTTGTAACGGCAAACAA 537590 36 100.0 31 .................................... TAGAAAAAGGGAAGGATTTTGCGGATGGATA 537657 36 100.0 31 .................................... TCCAAACAGGATACGTCAGATGAAGAAGAGC 537724 36 100.0 30 .................................... CCGTGCTTTACGGTGAAGGTGTCTCAAAAG 537790 36 100.0 30 .................................... CTAATATGGTGTGCTTGAGGAAAGTGGCTA 537856 36 100.0 30 .................................... GCGCTTACAGTATTGCAAAAAGATTTTAGA 537922 36 100.0 30 .................................... GAAACAAAGCAAGCTAAGAGCATTTGTAAA 537988 36 100.0 29 .................................... ACGTTGAAAGACAAAGTATCCTCAGCCAT 538053 36 100.0 30 .................................... CTCCGCTTTGGAGAGCCGTAACAAATGCTT 538119 36 100.0 30 .................................... CTTTGACAATAGAAAAAAGCTTCTTAGCTG 538185 36 100.0 30 .................................... ATTAGCTATGAAGCATACAAAGGAGAGGGT 538251 36 100.0 30 .................................... TGGAGGAAGCTTTGATATTGACCCACGCGA 538317 36 100.0 30 .................................... AACGCTTGCCCCATAGTTATTAGGGAATCT 538383 36 100.0 30 .................................... GAAGACGCAGGGATTAGCACAGTGATGCAT 538449 36 100.0 30 .................................... ATCTCCGTCTGCAACCACATAGCGGACGTT 538515 36 100.0 30 .................................... CATTTCTTCGTTGTCGCTAGCGTCTTCACC 538581 36 100.0 30 .................................... AATTCCGTGAAATTAATATTTTTTGATTCG 538647 36 100.0 30 .................................... TACGTTTGTAATCCACTTAGACAAGCGCAA 538713 36 100.0 30 .................................... CTTTAGCAGTTGTGAGCGGAAGCCCAGACT 538779 36 100.0 30 .................................... TATACGTCTAATAATATAGTTTTTGGCCGT 538845 36 100.0 30 .................................... AGCACTTAGTTCTAAAGTTTACACCATCGA 538911 36 100.0 29 .................................... AAATAACGTTTTTCCCGTCATTTGTGTAC 538976 36 100.0 30 .................................... TTGACAGCAAGTGTAAAAGTCGCAACTGCT 539042 36 100.0 29 .................................... TCTCCGAATTACAAAACGGGCGATGAGAT 539107 36 100.0 30 .................................... AATTAATTAACTTACTCTCATCTTCTACAA 539173 36 100.0 30 .................................... TGATTATGAAGAGAGCGAAGCAGATGGGGG 539239 36 100.0 31 .................................... AAAATTATGTCGAGAAATACATGTTACGACC 539306 36 100.0 30 .................................... CTAAAGTAACTAACACCACATCGGAAGCAG 539372 36 100.0 30 .................................... AGACAACCCTTGAACTAAATGACTTCACAG 539438 36 100.0 30 .................................... TCATAGATGTTCTTGCTACGGTCTCTTGTT 539504 36 100.0 30 .................................... AGTTATTTTGTCTACACCGGACGGTACAGT 539570 36 100.0 30 .................................... GTTAGGGTATACTGTGCAAGTATTTTTATT 539636 36 100.0 30 .................................... ATTGTTTGTCAACAAGATTACTTCCATATT 539702 36 100.0 29 .................................... AAAATTGATACAAGACCGGACTTATGGTT 539767 36 100.0 30 .................................... TTCGTTTTCACGACTTACGGCACACTTCTG 539833 36 100.0 30 .................................... TAGGTGTGCCTTTCTCGTTGTAGCCTACAG 539899 36 100.0 30 .................................... TAGAAATAACAGATGTGATCGCAACAGCGT 539965 36 100.0 30 .................................... ATTTATTGTTTTTGTGGAAACTATTAGCAA 540031 36 100.0 29 .................................... GACAAAAGCTAATATGTTGTATCCAGACG 540096 36 100.0 30 .................................... CGGCTCGCCTTTTATTAATCGTAGTTCCTG 540162 36 100.0 30 .................................... AGGTGGTTCAATTAGTGAAGAGTAACCAGC 540228 36 100.0 30 .................................... GAAATATCAGCAATCAAGTGGAACAAAGAG 540294 36 100.0 30 .................................... TTATATGATTGATGCGTTGATACCACCTAT 540360 36 100.0 30 .................................... ATTTTATCTGGGAGAAAATAAACAATGACG 540426 36 80.6 0 ..................ACA...AC.....A...A | ========== ====== ====== ====== ==================================== ================================ ================== 96 36 99.8 30 ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT # Left flank : TAATCTATATGCAAAAGAATTATTTAATAAGCAAGTTTTATTTTTTATAGAAATGCCAGAAAAAACCATAATTTCAGAAGAGGGAATAAAGAAATTTCAATTACATGTTGAAAAAATGTTAACAAGAGGAATCAATGTATTTATTATTTCTGAGCATATTTGGATGGATGGTGTAACTAACCATTTTTATTTTAATGATGTTGTGAATGAATTACAAATTTTGGCGAAAAAAGAACAAATTTTTGAAAGAATACCTTTATTTGTAGAAGAATCGGATTGGATAAAAGCAATAAATTGGTCTATGTTAGCTGTGGATAACTATGGTGGAAAAATGGTCGAATTAAAGTTGGAAGCTGTGGATAACTTAGTTGTATTTGTATTAGTTTATTTTATTTTCATTTATAATGAATGGCGAATTATCGTTGACTACAAAGGAATTCCCGCAAATATTATTGTTTACCTTGATAGGTTGATTTAGGTTGAGGTATAATGGAAAAGAC # Right flank : ATTCGGTAGAATCACCGCGAACCAATTCGGTTAAACAAATGTGAATGGAGCTAATTGATTTTGGAATCATAGAAAAGTTGTAGCGGATAACAAAAAAGATATCTATTAATTGGCGAAAGTAGACAAAGTTTATTCAAAACAAACCTATATCACGGAAAACTAGCATCCGGAAGCAAGTTAAATGAGCGGAACTAACACTCAGGTGGAATAAAGATTATGAAAAGAAAGAATAACATTTGAATTAAATATAGATTATGTTTAAAATCATCAGCCCACAAAATCAATACAAATGTGTCCCTCTAGAGTCAATAATCATCTCTAGAGGGATTTTTAGCCAGAGAATTAAACCTCCTTGTCGTTTTCATCACAATCTAATGACTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAAGGAATAAATTTTCAAAATTAGCTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 2762874-2761782 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009575.1 Listeria ivanovii subsp. londoniensis strain WSLC 30167 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2762873 36 100.0 30 .................................... GAGAAAGCTAATCGAAAGTTAAATGTGGCA 2762807 36 100.0 30 .................................... AGCGTCAATTTGATTTCAAAAACGCTGGCT 2762741 36 100.0 30 .................................... TGTGGTTATTGATGATGTGATGGTTGATTG 2762675 36 100.0 30 .................................... TGACTCGATAGAAAAAGCTGTCGAAGGTCT 2762609 36 100.0 30 .................................... CAAACTTGCTACTGTCATTCCTATAAAATT 2762543 36 100.0 30 .................................... TTTTTTTTAAACCTGATGTAGAAAAATACA 2762477 36 100.0 30 .................................... GGAAGCGATGGAGGACTTGCGCGATATTGC 2762411 36 100.0 30 .................................... CTATTAGCTGTTTTATATAACAGCGACACC 2762345 36 100.0 30 .................................... TAAATCAAATCCGGTGCGTATGTATAAGGC 2762279 36 100.0 30 .................................... AGAGTTTTCGCAGGCAAGTCCTCGAAGTTA 2762213 36 100.0 30 .................................... ATGATTTAGTAAAAGCTATGCAGTTGCCAT 2762147 36 100.0 30 .................................... GACAAAATTAGCTTGGTATGACAACAAGAA 2762081 36 100.0 30 .................................... TTGATGAGGAAACAACACGTCAGAATAAAT 2762015 36 100.0 30 .................................... AGAAAATAAGGCTTTTATGAAAATGCTCGG 2761949 36 100.0 30 .................................... TTGATGAGGAAACAACACGTCAGAATAAAT 2761883 36 97.2 30 ..........................G......... GTTGGCACTTCTTGGAATTACGGGTCCGCT 2761817 36 86.1 0 ......A.................G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCTAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCTTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAAGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGGTTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGAATAAAAATTTCTGCGAG # Right flank : AAACCATCTAATTTCGGTTTGTTTTTTTATTTACCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGAAAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATTGGCAACCAACATATTCGTGGAAACTCCTGAAATGAGACCTGGCTGAAATAGCAGATGAACGTTTTCGCAATGTTGTTACTTCTATGTCTAAACAAGCTTATTTAGCTATTGGCTCTCTTTTTTAACAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTGTTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGAGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATTAATAAGTGGGAGAGAAGTGGCGTAAACTTTAAATCCATTTGAAGCGTTTTATTACACATATTATAAGAAGCTATTCTACCTATTTAATAGACATCTATACTTTTCGGACGCTTATTATAAATTTTTTTAGAATAATAATGTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //