Array 1 1376952-1378448 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025226.1 Saccharolobus caldissimus strain JCM 32116 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 1376952 25 100.0 37 ......................... AATTGTTACCAAACAACTGGAAATTCTACGTTTTGCC 1377014 25 100.0 39 ......................... GTTAATAAAGGAGTACGCATGGAGAAAGAAGATGACTGT 1377078 25 100.0 39 ......................... TTATCTGCGTCAGCGATACTCAGTCTAGTTTTAACACCT 1377142 25 100.0 35 ......................... TTTTCTTCATTCTTTCCTCATTCCTCTTTTATTTA 1377202 25 100.0 38 ......................... TATTAAACATATTGTCTTTCACGACGGTTCTACTATAA 1377265 25 100.0 37 ......................... CGAAGAATGGCATATGTACGCCGGAAAAGAGTTGAAA 1377327 25 100.0 43 ......................... GCATATGATACGTTGATTTTTCCACCTCTTTCATTGCTGTTTT 1377395 25 100.0 41 ......................... TTTTCGGATCCTCCGCTTAACAAGTCAAATTCGCTCTCTTT 1377461 25 100.0 37 ......................... ATTTCTGTTTAACCACTCTTCGATTCCGTGATAGTCT 1377523 25 100.0 37 ......................... CGAAGAATGGCATATGTACGCCGGAAAAGAGTTGAAA 1377585 25 100.0 43 ......................... GCATATGATACGTTGATTTTTCCACCTCTTTCATTGCTGTTTT 1377653 25 100.0 41 ......................... TTTTCGGATCCTCCGCTTAACAAGTCAAATTCGCTCTCTTT 1377719 25 100.0 39 ......................... GTCACAACGGCGTAACACCATTTTAATGCCCTTAATACT 1377783 25 100.0 38 ......................... TTGAAGTTCTTACAGGCACCAGACGAGTTCAGAAAGAG 1377846 25 100.0 40 ......................... CTGAGACAGATTATAATACCAAGCTTAATTATTTAGAAAT 1377911 25 100.0 43 ......................... GCAGTAACATACTTCGATGAAGTACACACAAGAAGTAAAAAAT 1377979 25 100.0 39 ......................... ATGAGATTGACAAAATAGCTGCAATAAACTTCATTGAAG 1378043 25 100.0 39 ......................... TTTTGCACCTTCACTTCTGCCAATGCTATACCGCTGAGT 1378107 25 100.0 38 ......................... AAAGTTTAAAAGTTTTACTGTTCATCATAATCGCTATC 1378170 25 100.0 37 ......................... TCTGTTTTGCCGCGACCCTTTCTAATTTTGCATTAAG 1378232 25 100.0 36 ......................... CTTATCAGTATTTCTATCATATCTTTACACCCTCAG 1378293 25 100.0 41 ......................... GGCTTAAATTTTTTGTCAAACAGAGCATCGCTTATTACTAA 1378359 25 100.0 40 ......................... TGAAGAATTTCGTTTTTGACGTTACCAAATATGACGTTAC 1378424 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 24 25 100.0 39 GATAAATCCCCAAAGGGATTGAAAG # Left flank : TTAGATATTTAACTAAAGCATTATTTAAAAAGAAAAACATATTAAAAGATCTATATATTATTAGATATTAAATCCTTTTTAGTTTTATTGGGTTTTATTTTTTACGTGTTGACGCGTTTATTTAAGCCTCTTTATAAACTTATCTCTCCCGTTTTGTTTAAAAATGTTCATAAAATTCAGTTATTTTTTAAATTCTTTTTACCATCTCAACACTATTTTACGTATAATCGCTCACGTTTTTCTAAACTATTTTATCCAATTCTTATGTATAAGTTTAAATACGATAAATTTCGATCCTAGATGCGACCTATGCGAAATCTTTTGCTTAATTTTAGGTTTATAAATTAAAACTTACTTTCAATTTTATTTATGATACCTGCGACCGTATTACGAACCTAATAATTACTAGGAAAAGCGGTCGCAGGGAGGGTTAAGGGAGAGAAGATAAATTTATAAAGCAGAAAGGGAGAAAGTAAGAGTAGAAGTATAAAAATACACCA # Right flank : GTCGGAATGTTATCCTAGAAAGTATACAACTTATAGTCTTAGACGAATTCTCGTTTTATAATACCTATCAGAAGGAAATGTTATTGGAATTAGTAGAAATAATAAATAGGGAATATGCTAAAACTCAAATAGTAGTTTTAACTGCAACGTTAGATAATAGTAAAGAGTTGGAAGAAAGATTAACTAATATTAACGATTTAGAAACTATAACCATTAGCGGTAAATTATTTAGGAGACCCAACTATACTTATTTCGTTCAAAGAATTCTTAGCTTAAGTGAAATAGCCAACATAATTTCAGAGTTAATTAAAAGTGATGAAAATACATTAGTTTTCACTCCATCTATAAATGTAGCCGAGAGACTTAAAAAATACTAAACTCGCCTTACTGTGATACGCACCACTTTAAAAAAGATCATCAGGCAAGAGTTCAAATAGAGAAAAGATTAAAAGATGGCAATTTAAAATGTGTGATATCTCCTAAGACTCTACAGCAAGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATCCCCAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 1412388-1408227 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025226.1 Saccharolobus caldissimus strain JCM 32116 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 1412387 24 100.0 40 ........................ GCTGTTGAAGAACTTACGGTAATTCCGACGGGTATCGTTG 1412323 24 100.0 40 ........................ AAACAATTTTACAAGCATCATAATTTTTGAGATGGAAGAG 1412259 24 100.0 40 ........................ AAACTTGCCTATGTCACAACTCGTAAGCCTATTCTATAAT 1412195 24 100.0 40 ........................ CATATGGTAACGTACACATACAATACAATCTTTTCACAGT 1412131 24 100.0 41 ........................ CTCTTCTTCTGCATTTTTTAAAGCATCAGTAAGTGAATAAC 1412066 24 100.0 44 ........................ ATACTAATCGAACTGCACAACGGTAGTAAAGTGGTTTTTGCTAA 1411998 24 100.0 41 ........................ AGTTTAGGCAAAGCCATTATGATAATCATAACATCATCAAT 1411933 24 100.0 41 ........................ GCGCTATACCATTTACATCGTAAATCGTCGTGTTATTCGCT 1411868 24 100.0 42 ........................ ACATAAATATTGCTAGTTCAACAACACAAACCCAAACTAACG 1411802 24 100.0 40 ........................ CGCACTTGTAACAAAATTAACGAGTGGTATGAACGCATTA 1411738 24 100.0 41 ........................ ACATTCCTACACCACCACTGCTATACGGCGGTTCAGAGTTA 1411673 24 100.0 38 ........................ TAGTTACTCAGATAGAATATACTAATGCCAGAGGCGTT 1411611 24 100.0 38 ........................ ACTGTACCTAATGATTTATATGTAGTGACATTTGATGA 1411549 24 100.0 41 ........................ CTGGGGCAGACAGCACTGCGATATCTCTTGGCAAGAGGCAT 1411484 24 100.0 40 ........................ AGAGAGAGAATGGCGAATAGTGTAAGTGCAGGTCTGTTCG 1411420 24 100.0 40 ........................ TGTCGTCAACGACTTGGGAGTAATCACTTTCAACGACCCT 1411356 24 100.0 38 ........................ GTAGCCAAAGAGATCTTAGGGGTAGACTCCAAGTTGAA 1411294 24 100.0 39 ........................ ATCTTCATCACCACCTCCACCATCACCACCACCATCTGG 1411231 24 100.0 40 ........................ GTTTACTTTCTTCTGATAAAGAGAATTGTAACTGTAAGAT 1411167 24 100.0 39 ........................ GTTAACGCATTATTTCCTAGCGGATTTTGTTGTTGTTGT 1411104 24 100.0 39 ........................ AATGGGCTCCAGTATCCCCTTACCAATTTAAAAGGCTTA 1411041 24 100.0 42 ........................ CCTATATCTCTCTTTAAGTGATACGTTAGCTAGTATGAACTT 1410975 24 100.0 43 ........................ AATCATAAATATGTGAGATTTCTTCCATAGTCCACCTTCCCGT 1410908 24 100.0 39 ........................ GCTCTAACAAACGCTTTGAACGAAGCGAGAAAAGCCCTA 1410845 24 100.0 40 ........................ TAAATTTCGAAAGTTAAGGAATGATCTTTTTGGTAGCAGT 1410781 24 100.0 39 ........................ CTTATATATTATTTATTATTATTCTTCCATTAGTAAGGT 1410718 24 100.0 43 ........................ TTTACAGTATATCCGCTAGCTATTATCTCATTATATACGTTAG 1410651 24 100.0 40 ........................ TTATTCATAATTGCAAGGCCATCAGAGTTTGGTCATATAA 1410587 24 100.0 44 ........................ AATAAGTTTGTTAACGTTCATCAGAACTTTAACATTATACAAAG 1410519 24 100.0 42 ........................ AATCGAAGTTAAAGAGGAGATATTGGGCTAGACTCATATATA 1410453 24 100.0 38 ........................ AAGCAGACTATAACATAAAACTCAATTATTTAGAAAAA 1410391 24 100.0 42 ........................ CTCGCCATGTCTTCCACTTTTTGATGTATGCAAACGACTTCT 1410325 24 100.0 41 ........................ TAACTCTAACGCTCAGATGATGTATAACATAGAGAAGCTTG 1410260 24 100.0 39 ........................ ATTATACCCATGCCTTACCATACTGTCTGCTTTCTCATA 1410197 24 100.0 41 ........................ TATACGGATCCCTTCTTGCAATGTCAATGATGACATATTGT 1410132 24 100.0 38 ........................ AGTTCACCATCTATAGAACGTGTGATGTATCCCATAAT 1410070 24 100.0 40 ........................ TCGTAGGTGTAGGTGGCTTAGGCTTTCACATAGCAAAAGC 1410006 24 100.0 39 ........................ AATAGCCGGAATTAACTTGTTCATGACTGCTGCCATCTT 1409943 24 100.0 41 ........................ TTATACAATTTCAGAATAGAAGAGTTAAAGCAGAACTTGAA 1409878 24 100.0 42 ........................ CGTTACTGTTTCTGAAAGCTATATACACTTCGCTAGGTATTT 1409812 24 100.0 42 ........................ TTGTTTCTGTCTGCTGAACTTGTTGTGTATGTGTGAGCTGTA 1409746 24 100.0 45 ........................ CTTTCGTAATACATCGAAAACGTCGTAAAGTATAACGTTCTTGTT 1409677 24 100.0 40 ........................ GTGCATTCAAAGCTTGGAGAAAATACAACAGGCTCAACTA 1409613 24 100.0 42 ........................ AGTATAAGTATAAGACGGTGGAAGAAGAAACATGACTTTTTA 1409547 24 100.0 40 ........................ TTAATTGAAAAACACGGAAACAATGTAAAGGAAAACGTGT 1409483 24 100.0 43 ........................ CATGAGTAATCGCTCTTTCTCATAATTCAGTTCAATTTTAGCA 1409416 24 100.0 41 ........................ AGCTGAAGATGTCGTATAAATTGAGAAGCGATGATGTGCCG 1409351 24 100.0 40 ........................ TTATAAAGCGGTACAGGTCTCTTTTCGCCGTATTGTACCA 1409287 24 100.0 39 ........................ ATGGACTATGATGAGAGGGGAAATAGTTAGGTATGAAAA 1409224 24 95.8 39 A....................... TTCCAATCGTAATGAACTACATTTTTTGCAGCATGAACC 1409161 24 100.0 39 ........................ ATTTTTCCACCCCCATTTATCTACTCTCATTACTGGTAT 1409098 24 100.0 40 ........................ CTTAAAGGTGCCTTAGTCCCTGGCACTAATTACATAACAA 1409034 24 100.0 42 ........................ TAGTGTTGTAAACTCTCCCGCATATGAACTTAGTTTTCTCAT 1408968 24 100.0 41 ........................ AACATAGAGATCTCCAGGTAAAGCTGAAGAAGGTACAGATT 1408903 24 100.0 39 ........................ ATTATCTTGTTTATTTTTATATTATGTATAAGAGTTAGT 1408840 24 100.0 38 ........................ AGATAATAAGCCTGCAACATTTTACTTAGCACTGACTG 1408778 24 100.0 40 ........................ GGATCTAAGCTTAAGTCTGGATGTTCAGGATGTTTGAGTA 1408714 24 100.0 42 ........................ AGAAATGTCTTCAGTACTTTTACCATCTGGAGTAGACAATTT 1408648 24 100.0 46 ........................ TTTCTAAAGTAACCCCTTGCGGGAATATGTATTCACCGCCGTTTTC 1408578 24 100.0 39 ........................ TCCATCTTGTGTTGTCTCTTGTACTCTTATTGTGTATAA 1408515 24 100.0 48 ........................ ATTTCAGATTACAGAAAAGGAGGTTAAGGGGCGGAAAGCCTCACCCTT 1408443 24 100.0 40 ........................ CGCCTTATAAACTTTGCGGGGGTTAAGGGGCGAAAGTCCC 1408379 24 100.0 40 ........................ TTGTTGGTAAATCGCCAAAAGCATCAGTTATTATAGTTAG 1408315 24 95.8 41 ........G............... ACTGACGAGAATATAGCTAAGGCTTATTCTGTGTATTTGGT 1408250 24 95.8 0 ........G............... | ========== ====== ====== ====== ======================== ================================================ ================== 65 24 99.8 41 GTTAATCTACTATAGAATTGAAAG # Left flank : TACTAATTTTAATTTCAATTATTTCCGGGTTAGGATAGTGAAGTCGTAAAGTTTGAATTCTTAAGTTTTCTATAGCAGCTTTAGTTCCTTCCACTATAGGACTAGGAATTACTATAAGTAATTTATCTTCCTTTTGAGCCGAAGTCTCATTAAGAAGTCTTAGAAGATAAGTTTCATTAAATCCTAACGTTACAAAATAAGACTTCATCATTATATATGGTAATATCATAAATAAATAATTTTTGATTACTTTCGAAGAACTCCAATTACAATTTTTGTTCCCTACTATTTTCGTTGTTTTTCTTTTTTCTTGTTTTGTTTGGGGTTAGGTCGTTTTCCTTAATTCATTATCTTTATAAAGAATTCGTTAAAATCCCGGGAAAACTCGGGAATAGTAAAAAACTAGATTAAAAGTAAAATAATACTAATGGAAAGTGGAGAGAAGAAAAACTTATAAGAAGGGAAGAAAAAAGATAAAATAGAGGGTTAAAAAACCCTCA # Right flank : ATAAAGTCGATGTGTTGTTTGTTAAGTTTAATCACTCTGTTGGTAAAAAATCTAGTTCTTTTAAGGGTGTTAAGTAATCTTTATTAAAGTCCTCACTTAAATTTTATATTGATGGAGAAAGAAGTTAGTTCGGAAGAGGTCTACAAGAAGTATAGGAGTTTAGTTAAAGTTTTCAGATTCTATGTCGTGTTGAGAAAGTTTGGTTATATAGATCCACTAATATATTCAATAGACCCAGCGTATATTAAGGATGTGATAACTCAAGCTTTAAGGGAGTACGTATCATACTTGTCCTCTGCTACTGTGCGTAAAGTGAAGGTTATTTATAAGAAGGAAAATAAGGAGGCTGAGCTACCTTGCCTTGTCGTTATGAAGAATTCTGAAATTCCTCAAACTTTTATTTCAGCATACCCAGACGTAGTTCATCCAGTGATCTCCAGTGATGAGGTTTGTATTGCACCAATATATTGGAAGAAGGATGGGAGTGCTGGTGTGGTTCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 1416831-1420203 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025226.1 Saccharolobus caldissimus strain JCM 32116 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 1416831 24 100.0 41 ........................ AACATAGCCACAGCCACTTGTTCAGCAACAGTTGGCAAAGA 1416896 24 100.0 37 ........................ GGTTAAGTACAGATGTAGACGTCTTGGACTTCTCTAC 1416957 24 100.0 39 ........................ TTTATTAGGGTAGTAATATTATTTCCGTAAACAAAATAA 1417020 24 100.0 40 ........................ TCTTTTTCTCTTGTTTCGCTTTCTCTATCTTCTCCTGCAA 1417084 24 100.0 40 ........................ ATCGATGTTATTACTTCTTTAGGCGGTGTTATGTTGATGA 1417148 24 100.0 39 ........................ TTATCGCTCTTCTAACTGCATCGCTGTAGTTTGTAGTAT 1417211 24 100.0 39 ........................ TCAACTTCCCAGTTGTAAGGATCGTCAATTGTGGTAGTA 1417274 24 100.0 38 ........................ AATATTATGGCGTTACTACGAATTTCAACGGGAGTTCG 1417336 24 100.0 41 ........................ CACTATTTGGCGAGTATAACCAAACAATAAATGGTATTTGC 1417401 24 100.0 41 ........................ AAGTAGATTGTAGATACACCGAGTTCATGTAGTGTCTTCAG 1417466 24 100.0 42 ........................ GGTAGCTTTATTCCACCAGGATAATGACCAGCTACGAAGAAG 1417532 24 100.0 39 ........................ AAACGTTTTGTCGTATTGGGGTGTCTGGATGAGCGTAAG 1417595 24 100.0 43 ........................ ATAACTATGTTTCCGTTTGGTTGTCTTTTATAGCAGTTTATCA 1417662 24 100.0 41 ........................ CTGGGAATTTCAGTTACAATTGACATAAAGGACGCTAACAA 1417727 24 100.0 40 ........................ TCTGTATGCGGTGGCAATATAACAAACGACTTCCAACTAC 1417791 24 100.0 38 ........................ AGAAAAACCACAACAAACACCTATGAGCTTAGCATCAA 1417853 24 100.0 38 ........................ ATCATGATATGTGTGTTAAATCAAGATGAAGTATGCCC 1417915 24 100.0 39 ........................ CCAACTTAAATTTTCTCTCCATACTTAAAAATAAGTATA 1417978 24 100.0 39 ........................ CGTAGAATGGGTAGTACGACAACGCTTGTGAGGTGAACG 1418041 24 100.0 39 ........................ TACTAATACCTTTTTTGCCCCCTTATTCTCTCCCGTGGG 1418104 24 100.0 40 ........................ TTCAAAACAAAAGACCAAAGAAGAAGAAAGAAGACTTCTC 1418168 24 100.0 38 ........................ TTACAGACCATGACATGGTTCTCCTTAGCTTCAACAAT 1418230 24 100.0 41 ........................ AACGTGAAGAACCCCGTAGTTTACGTTCCGCCGTTCACAGA 1418295 24 100.0 39 ........................ ACATATACGCAGAAGAACGTCGTTTGGTGGATAGATAAG 1418358 24 100.0 43 ........................ TTATGTCTGTCGCTATTTTATTAGCAGAAGAAGTGAACATGTA 1418425 24 100.0 40 ........................ AACTGTGACAATCACAAATGCTGATTTGCCAGATATATCT 1418489 24 100.0 39 ........................ ATCATCATTCTCTACAAAGTATTGCCTTTCCTCACAAGT 1418552 24 100.0 43 ........................ AATAATATTGCTGATTCCCACCAGGTGACGGTGGTACAGGTGT 1418619 24 100.0 42 ........................ TTTCAGATCTGCGCGAATACGATATGGATCATCATTGAGAAT 1418685 24 100.0 40 ........................ TTGGAGGGTGCTGAAAGATTACTGGTAAATATGTTTGTGT 1418749 24 100.0 43 ........................ CGCCTTAAAAGGCGAGGTTTGTCGTTCATTTTGTCAGCATTGC 1418816 24 100.0 42 ........................ CAGTATCAATAACGTACCGGAACTCGTTTGTGCCACACCGAC 1418882 24 100.0 39 ........................ TTATACGAATACGTATTTGATAGCGATCATGATGAGCAG 1418945 24 100.0 46 ........................ GATGAGACATAATCAGCGATAAGCGTGTATAAGTCAAATTGTTTCG 1419015 24 100.0 42 ........................ AATATACAGTAATCATGGAAGCATCAGCCACGGAAACTGGGT 1419081 24 100.0 41 ........................ CCTACATTCATTATGTGTGTCGTTCCTTATAAATCTTTCTG 1419146 24 100.0 39 ........................ TACGATAATTTCTGGAGAGTTACGTTGGACGACTTAATA 1419209 24 100.0 42 ........................ ATAACTTATAGAATATATGACGCAAACCCCATTATTTGTATT 1419275 24 100.0 43 ........................ GTCTCAAACACAATAAACATTACGATACATGTCACTTCATTCC 1419342 24 100.0 43 ........................ AATAGACGTTCAGGACGCCTCGACGCTCAGATATGGCTCAGAC 1419409 24 100.0 41 ........................ CATCTTCTTCTTAAGAAGAGTATTCTTTTTCTTCTTCTTAT 1419474 24 100.0 40 ........................ AGACAATAAGGAAATCGGCATGGAGGTGATTAAGGGTGTA 1419538 24 100.0 39 ........................ GCAAATTTTGACATACCGTTTGTAAGCAGTTTCACTAAG 1419601 24 100.0 42 ........................ AGACACATATCTCCTGCATGCTTTAAACTCATCTTCATTAGT 1419667 24 100.0 39 ........................ TCTTTTGTGAATATCCTGACACAATTTCACTGTTTTTCC 1419730 24 100.0 40 ........................ GTTATGAAAGCCTGTATAGATGAAATACCATTTATGATTT 1419794 24 100.0 39 ........................ CGTCTTTTAGCGCCTCAATGTCGTTATTCCCTTCGCCGT 1419857 24 100.0 40 ........................ AAAATGCTATACACTTGATAAATGTTTCTCCAATCACTCC 1419921 24 100.0 41 ........................ ATCTTTTCGAAGTTTTTGATAGAGATGGTGACTATTACTAT 1419986 24 100.0 37 ........................ TAAGTAGTACCATATCCACCCCCGCCGCCACCACCGG 1420047 24 100.0 41 ........................ AGTATCTGCTGCAGTATTTAATCTATTATCTACGAAAGAAG 1420112 24 100.0 44 ........................ AACATGTATTGGACTTGTGTTATTGTAACGCTAGCTGTTCCAGT 1420180 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== ============================================== ================== 53 24 99.9 40 GTTAATCTACTATAGAATTGAAAG # Left flank : TCAGACATGGACAATCCGAGATATCTCCTAGGCTTTATTGGAGGCATATGATAATTCCAACCCCTTAATTCCTCCTCTATAGGGTCAGAAGCCCTATAGGAGTGAAGCCTCCTAACCTGTCTAATTATTTGCGACCTCACATTATACATTATGCAAAAAGAATCTAAAATACACGATAATGACCCTTGTAAATTTCTTCCCGACTTTAGTAAGGATAACCGTAATAAATGACGATTTTTCTTTAAATAAAGAATAATAGAAAATATGGGGAAAAAGTTCTCCCGTATACAATCGTTGTTTTTGTTTTTTCTTGTTTTGTTTGGGGTTAGGTCGTTTTCCTTAATTCATTATCTTTATAAAGAATTCGTTAAAATCCCGGGAAAACTCGGGAATAGTAAAAAACTAGATTAAAAGTAAAATAATACTAATGGAAAGTGGAGAGAAGAAAAACTTATAAGAAGGGAAGAAAAAAGATAAAATAGAGGGTTAAAAAACCCTCA # Right flank : TATAGTATATTTTATTTTCGTTTTTTTTAAAAAATAATACAAATGCACTATAACGTAGTAAACTAAAAGGTATACCAGAATATTATTGATATAATATCACTAATAGTAAAGTTTAAATATAATATTTTATAAAGCGATATTATGAACCAGAAAGTTGTGGAGACTAAGGGAGGATGGAAGGCAATTTTTTCGATTTCTATTGAAAAAGTATGGGGAGATGAGGGAGATGCGTTCTATATAGTTTCACCTTATTTAAAGGAACAGATAAGTATTGATATATCAGATGCTGAATATATATTAGATGAAATAAAAAGATTGAATTCTGCTCTTATGCACGCTGAACGATCGAAAACTAAAAGTGCTATTTCTGAAGAGATCTTAAGTAAATTGATGAAGCTAATAGTAATATATGTTAATGAGGTTGTAGAGTCAAAGCGACATTCTTAAGATACTTTGCTAGACTGTTAAATTTTTCCTCATACTAACAGACCTTATAAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 4 1450163-1448473 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025226.1 Saccharolobus caldissimus strain JCM 32116 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 1450162 25 100.0 39 ......................... TTCTATCGCTCATATGCATTAGAGCTGCTCTCAAAAGAG 1450098 25 100.0 39 ......................... TTTAAACCATCAAAACGTTACGTAATGTAACTTTTTTTT 1450034 25 100.0 38 ......................... TATGTAAAACTTTTCGCCAACCAATCGTAATTCTTTTC 1449971 25 100.0 40 ......................... CTAACGCTACCAACTCCAGTGTTTTTGTATTCAAAAGCCA 1449906 25 100.0 40 ......................... TTTAGCATCTTCATATGTCTTCCTAACGAATTCACCCTTA 1449841 25 100.0 39 ......................... TATAATGATGGTGAAATACCCAGTGAAGTGTATATAGCG 1449777 25 100.0 39 ......................... GTATTTTTGTGCATATTCGTAATCTTGTCCGTGATATCT 1449713 25 100.0 41 ......................... TCTAACCATTCCTGTATACTGCTAAAGCCGCTTATTGCTAC 1449647 25 100.0 36 ......................... CTGAAGTAGAAATAAACCACTTCAACGAGTTACCAA 1449586 25 100.0 38 ......................... TATGAAAAGTCTCCGTATGGAGAATCTCTAGGCCCGTT 1449523 25 100.0 39 ......................... TTAAGTTAAGCAGTATGAGGATGAAATTAATTTATGTGG 1449459 25 96.0 41 T........................ CCATTCGCAAAAACTGTAGATCAATCTTCACCATATAGTTT 1449393 25 100.0 41 ......................... AGGTACGTATAGCTTTATGCCTTCGTAGTTACTTAAATAAA 1449327 25 100.0 38 ......................... TTCTCGTTAATAATATCGTCAAACGACCCCGTTGATGC 1449264 25 100.0 40 ......................... CAGCCTAACACATCCTTTGTCAAAAAAATGTCAAAATAGT 1449199 25 100.0 39 ......................... TTTTGTAAACTTCCCCAGTACCGACACTATAACAATCAA 1449135 25 100.0 41 ......................... AGGTACGTATAGCTTTATGCCTTCGTAGTTACTTAAATAAA 1449069 25 100.0 41 ......................... AATATGTCGATCCCGATCAGTGCTAGCAGTATAACCGCATT 1449003 25 100.0 37 ......................... TCCATATTCTTCTCTGAACTTATCGTACTCTTCCGCA 1448941 25 100.0 35 ......................... CGTTTAAAAGTTTTACTGTCAAACCTAACATAAAG 1448881 25 100.0 39 ......................... GTTATACTATTATGATGAGGAGGAGTGGGAAGAGTGACC 1448817 25 100.0 38 ......................... AGAAAAATGAAATAGACGAAGCAATAGCTGACTTAGAA 1448754 25 100.0 40 ......................... CCAAACGGACTACTTAAGAAATTATCAATCGCTTGGATTT 1448689 25 100.0 39 ......................... TTATACACAACCTACTATTACACACTATCACCCGACATA 1448625 25 96.0 38 ..........A.............. TCACTAACTCTCTTTGGGTGTGTTATAACGTGGTACAT 1448562 25 96.0 40 ..........A.............. CTGGTGCAGTCGTTCCACCCAATGGTCCTGCGGCACCGCC 1448497 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 27 25 99.6 39 GATAAATCCCCAAAGGGATTGAAAG # Left flank : AAGGATGTAATTATTAGGAATTAATATATAGAATAATATAAGTTATTATTAAAGATTTTACTCTCTATTAAATCCTTTTTAATGTTATTGGGTTTTGTTTTTTACGTATTGACGCGTTTATTTAAGCCTCTTTATAAACTTATCTCTCCCGTTTTATTTAAAATTGTCCATAAAATTCAGTTAATTTTTAAATTCTTTTTATCGATTCGATACTATTTTACGTATTATTATTTGCCTTTTTCTAAACTATTTTATCCAATTCTTATGTATAAGTTTAAATACGATAAATTTCTATCCTAGATGCGACCAATGCGAAATCTTTTGCTTAATTTTAGGTTTATAAATTAAAAGTTACTTTCAATTTTATTTATGATACCTGCGACCGTATTACGAGCCTAATAATTACTAGGAAAAGCGGTCGCAGGGAGGGTTAAGGGAGAGAAGATAAATTTATAAAGCAGAAAGGGAGAAAGTAAGAGTAGAAGTATAAAAATACACCA # Right flank : AACGTTAACTTAAATTTGCCTAGATGAGTTATATTTTTAGCTAAAGGAGTTGATAAGATAATGTTAGATAAGAAGATTGTTTTCGTTAAGGATTGGGGGGCTTATGTTAGAGTTAGTAAGGGTATGATAACTTGTGTGGTAAAGGATGAGGTTAAATGGTCTTTATCTCCAGCTGAAATATCCTCAATTATAATTCTGGCTAATTCCTCAATATCTTCAGAGGTCATAAATTTGGCTAATCAGTACGGCATAGAGATAGTGTTCTTTAAGGGTAATGAGCCTATTGCTAAGATAATACCCGCATCTTACGCCGGTTCTTTTAAGTTATGGTTAAGGCAGATAAGGGCGTGGAAAAGCAGGAGGGTTAATTTCGCTAGGGAATTCATATACGGTAAGCTTCATAATCAATGGGTTACGTTAAGATATTACGAGAAGAAATATAACATTAATTTAAATTCAGATAAATTATTACAGCTTGAAAGAGAGGTATTAGTTGAAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATCCCCAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 5 1573533-1574645 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025226.1 Saccharolobus caldissimus strain JCM 32116 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 1573533 25 100.0 36 ......................... CGTTTTCGGATCCACTACTTAGTAAATCGAATTCAT 1573594 25 100.0 38 ......................... AGATTTAAGGAGAATACTAGGAGGCGACGGAAATGAGT 1573657 25 100.0 43 ......................... ATAACGCTAACCTCAATGTAGGTGTTTCCGAGATTGCTTCTTA 1573725 25 100.0 36 ......................... AGATTCTAAATCTAAGTATGGTGTTTTGCCTTCTAC 1573786 25 100.0 40 ......................... TAATGAGTTGTTTGATACCCAATAACGTTTGAACTTTATT 1573851 25 100.0 40 ......................... ACCCGTAGCTAAAGGCTATGGGCAAGGTGGGGCTATGAAG 1573916 25 100.0 40 ......................... ATAGTCGTGGATACTCCAGGGTTTATTCTAATAGATACGT 1573981 25 100.0 40 ......................... TAAATATATATGTGACAAACCAGACAGACGGTACCCATGA 1574046 25 100.0 39 ......................... CATTCTGCCGTAACCGTGAGACGTTAACGCTTTGACTTC 1574110 25 100.0 39 ......................... ATGCATTTACGAGAGACGGATGGAAAAGCATATACTGTA 1574174 25 100.0 39 ......................... TATTAACTAATCTATTGAAACATTTGACAGCGTATTCGT 1574238 25 100.0 38 ......................... ACAACCACCTAAACCATTACCAGTACAGCCAGAATCAC 1574301 25 100.0 38 ......................... TAAATAGATCTGGGCAATAACGTCATACGTTTAAGTTC 1574364 25 100.0 40 ......................... ATACAATCAAGGGACTATAACGCAAGCACAGATAAACGTC 1574429 25 100.0 40 ......................... TGATCCTTTAAAGCAACCATAATCTCCCTCAACTGCATAA 1574494 25 100.0 41 ......................... GTAGTAGTTTGAGAGATATTACCATATTTGGTGTACGCGTC 1574560 25 100.0 36 ......................... TTAACGACGTTATCTTTGGACGTTACTACTTATACA 1574621 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 18 25 100.0 39 GATAAATCCCCAAAGGGATTGAAAG # Left flank : TATCCTTTTATTATCTCGATATTTTTATTTAAATTTAATGTAAGTTAATCTTTACTTTGCTCTCTATTAAATCCTTTTTAATATTATTGGGTTTTGTTTTTTACGTCTTAACGCGTTTATTTAAGCCTTTTTATAAACTTATCTCTCCCGTCTTGTTTAAAAATGTTCATAAAGTGAAGTTATTTTTTATATATTTTTCATCGACTCCATACTATTTTACGTATTGTTATTTACCTTTTTCTAAACTATTTTATCCAATTCTTATGTATAAGTTTAAATATGATAAATTTCGATTCTAGATGCGACCGATGCGAAATCTTTTGCTTAATTTTAGGTTTATAAATTTAAACTTACTTTCAATTTTATTGACGATCTCTGCGACCGTATTACGAACCCAATAATTACTAGGAAAAGCGGTCGCAGGGAGGGTTAAGGAGGAGAAGATAAATTTATAAAGAAGAAAGAGGAAAAAATAAGAATAGAGGTATAAAAATACACCA # Right flank : GCATATATTTACTGTTGAACGATAAACTTCTTCCCTTAATAAATCCTAAAGAAGTTATATTAAATATTAAATAAACTATTCTATCTTACATAATGGGTATTCCATAAGAGTAAATAATATATTTTGTCAATGCAATAATTAGTTGAGTATATAATGTATAAACTAGAAACGTACTATAACGTATTTCCCTGGCATGTGAATCACTTCGGGAGTCTCCACGGAGGAATATACATGAGCTGGCTTATAGATAGTGGAGGGCTTCTGATGTCTAGCATAAGTAAGGGTAACTATCTTTTAGCCTCTCTGGATTACTTATACTTATTTAAGCCAGCTAAAGTAGGGGATATAATTAGGGTAATTTCGGAGGTTACGGCTACGTGGAATTCTTCAGCTGAAATTAAGGTTAAGGCGTGTATAAAGGATAGGTTAGGAGCAATAGGTTTAATGACATTTACTGCAGTAGATGAAAATAACCGACCGAGACCACTTCCCACAACTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATCCCCAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 6 2695671-2696659 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025226.1 Saccharolobus caldissimus strain JCM 32116 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 2695671 24 100.0 41 ........................ ATCACTCCTTATCTGATTTGCTAAGTTTTCTATCTCGGTAG 2695736 24 100.0 40 ........................ TATATTAAAAGGATAAGGTTTGTACAGGGAGGAGGTCAGT 2695800 24 100.0 38 ........................ TTTTTACACCCGAAAAAACTACAAAACTTGAGCATAAT 2695862 24 100.0 42 ........................ TCATCATATCTTATAATTACCTTCAAACATCTCACCTTATTT 2695928 24 100.0 41 ........................ ATATTTGAAGGTGGTATTATTTGACCTGAAGAACGTGTTTG 2695993 24 100.0 38 ........................ AAGATTAAGAACATTGACGAAATCGATAATAGTTTTCT 2696055 24 100.0 41 ........................ CTTCAACTATTGTGAATATCTCGTATCTCTTAGTCATTTAC 2696120 24 100.0 40 ........................ TACTTAATACAGCTCCAGTTGCAACAGCCATCTACCCCAT 2696184 24 100.0 40 ........................ CAAACGTAACCGTTCTTGGTCGGTTTGCAGTCAATTATTA 2696248 24 100.0 40 ........................ TCAGCTGTATGCATATTAAGAAGCTGGATTGCTCTTACAA 2696312 24 100.0 41 ........................ ACTACCTCTCCGTTTAGTGTTACTACTTCTATTGGACTGTT 2696377 24 100.0 40 ........................ AGGTATAGGGAGTGATCTTTGTGAAAGCACTTAATTATAA 2696441 24 100.0 43 ........................ CCTAACGAATTGCAGTCAGTAATTAATATATTGCAAGCACAAG 2696508 24 100.0 40 ........................ TATCCAGCCATAACATAAGTTGTACTCGTTGTGGTTGCAG 2696572 24 100.0 40 ........................ TGATAAAGGTTTTGTTAAAACGAATTAAAAAGGTTTTGTC 2696636 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 16 24 100.0 40 GTTAATCTGCTATAGAATTGAAAG # Left flank : CTGAAAATAGTTACGATTTATATGATATTAAATTAATAAAATTGTTATTTTCACTGAAAATTTATGTGAGATATTTACTAAAAGGTTTTCCTCATTGAAATTTTTATTGTAAAACTACTCTTTTAAAATCTATTAAATTAAAAAATTTTTAATTTATTTAATAAATATTCATAATAAAAATAACTGATCTTTTTCAGTAAAAATACGATTATTAAGAGTAGGTGAAAGTCTTGTAAATGATTAGATTTCTCTTTAAGAAAATATAGGGAAAGGGTTCTCCCGTATACAATCGTTGTTTTCCTTATTCGTTGACTCGTTTTGGGTTAGGTTGTTGGCCTAAATTCATTATCTTTATGAAGAATTCGTTAAAATCCCGGGAAAACCTGGGAATAGTAAATTAAGATAGAAAGAGTAATATAATACTAATGGAAGAGTAGAGAAGAGAAAAGCTTATAAGAAAGGGAGAATAAAAGATAAAATGGAGGGTTAAAAAACCCTCA # Right flank : GAACTCTCTATATCCATGTAGTCTTCAAGGTATGAGGCGTAAAGTATTGCTCTTAAACCCCACTCCTTCTCAAAGAGTAACCTACCCTTAAGCATGATTATTTTAAACTTTACCGGTGCATACTCTATAAACCTTACATCTCCCCGAATCCCGGTGAGTTTTTCAATCTCATCGTTTAAATCGTCAGCGTATAGCCAAGAATCCCTCCACGAGACCTTATATCCCGTGTATATTCCTATATCTATATCTCTAAAAACCTTGGACTGTATAAAACCACCGTAAACAGTTGCTAACAATATTTCCTTTTTCTCAAAGAGTAACCTCTTAACTTCCTCTAAAATCTTCTCCCTTTCCTCAAAGGGGATATCATGGGTTGCACTCAAAGCTTTTCACCTCATCTATGAACTCACGTAGGGTTTTAATAATCCATTCCTTACACTCATTATATATTCTAATGTCATCCACAGTCCAGTACCGATGGACTATTATATTCCTCATAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTGCTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //