Array 1 43697-45184 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQJB01000006.1 Neisseria meningitidis strain M29618 M29618_CHA4080A16_cleaned_ctg_11716, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43697 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 43763 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 43829 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 43895 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 43961 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 44027 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 44093 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 44159 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 44225 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 44291 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 44357 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 44423 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 44489 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 44555 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 44621 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 44687 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 44753 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 44819 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 44885 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 44951 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 45017 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 45083 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 45149 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //