Array 1 577649-578286 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDDS02000002.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0039 NODE_2_length_846096_cov_25.486591, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 577649 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 577710 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 577771 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 577832 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 577893 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 577954 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 578015 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 578076 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 578137 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 578198 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 578259 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 594927-596421 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDDS02000002.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0039 NODE_2_length_846096_cov_25.486591, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 594927 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 594988 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 595050 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 595111 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 595172 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 595233 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 595294 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 595355 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 595416 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 595477 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 595538 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 595599 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 595660 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 595721 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 595782 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 595843 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 595904 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 595965 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 596026 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 596087 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 596148 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 596209 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 596270 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 596331 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 596392 29 93.1 0 A...........T................ | A [596418] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //