Array 1 191647-192408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPQ010000003.1 Pediococcus acidilactici strain CCUG 32235 SS2008_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 191647 36 100.0 30 .................................... TTAATAAATATGGTATGTCCCCTGTCGCTT 191713 36 100.0 30 .................................... TTAATTAAGAAAGTTACTGTTGAAGAAATT 191779 36 100.0 30 .................................... CCAGCGACGCTGATGTCTTGGCATGGGAAT 191845 36 100.0 30 .................................... GGACTAATGCGAACGAAATATCTCCGATTC 191911 36 100.0 30 .................................... TAATCACTTTCAGTGTTATCTAATTCCAAC 191977 36 100.0 30 .................................... TCGATAAGCACGATACTGAGCTAACCAGTC 192043 36 100.0 30 .................................... GTAGGGTAACTGATGTTAGTAGCGTTATTT 192109 36 100.0 30 .................................... CATTCGTTTGGCTATGTTTTCAGAATTTCT 192175 36 100.0 30 .................................... TTGTTGACGCAGCCATATTTTTAAACCAGA 192241 36 100.0 30 .................................... TACTATTCACTGCATCCCTACTGCAATACT 192307 36 100.0 30 .................................... TTGCAAAGAGACAAAAAGCCTACAACCATG 192373 36 94.4 0 .................G................A. | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.5 30 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Left flank : CCAAGATTTAGTTATTCAAAAGTATTTAACTAAGATTGAACGGGTTTTTGCCGAAGGATTGGTGGATGAGCAGCGTAACCAAATTCACGATCAGGTCAACCAACTATTTAATACGATTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTCAATTATGATTTTGATTTGAAAAAGTTATTGAAGTATTGTGGAGTGCACTTTGATCCGCTAAGTGTGGGTAACCCGTATGGTATAATTGAAGCGGTTTTGAAGATTCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTAATGTTGCACATTATTTGACAGCGACCCAAATTGAAGAGCTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATCGAATTCACAGAAATAGGTAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAGTAATTGATGAAATTTTAGTTAGAAAATAACG # Right flank : CTGACTGAAATTAATAAGAGTTAACGTTTTAAGGAAGTTATCAATAGTATTAGTAGTGAACTTTGAAGAATGGAATTTTAATGAAACTACTAGTTACGGAGAATGATAAACTACTAAGGTTCAAATGAATTTATAGGTTTAGCATTATTACTCGAAGACGACGTTTTAGTGGTGGTTGGAAATAAAATCCGCTCGAAATGATCGGGTGGTTTTCAGTTTGTAAAAGTATACCAATATATTGATATAGTAAATGCATAAAGTTAAGAAAGTGATAAAAACTGGATGATGAAGAATAAAAAGGCATCGCAATAAGCAAATGACAATAGTGACACTAATCATTCAGACGATTACAGCTATTGTACAACTCATCACAATGCTTAAAAAATAGGTAAAAGAGGCGATACGTCTCTCTTCTGTTCATCAATTTTAAAATGGAGGCATTAAAATGAAAAACATAGAAAAACTACAATATTTAACTTTGACTATCAGTGTCGTTGCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //