Array 1 479-142 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCLU01000052.1 Lactobacillus helveticus strain UC1266 52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 478 29 100.0 33 ............................. GAATATTTAGGGTTGTCCAAAAGTGGACAACAG 416 29 96.6 32 ............................C GATACTACCAGCGCCACTATTGCCATCGCTGG 355 29 100.0 33 ............................. ATTGTCAATCTCTTCATCGCTAGCCAAATTATA 293 29 100.0 32 ............................. GAAGCTCACCACACTAGAGCAAGTTCTTATAT 232 29 96.6 33 ............................C CCCACGCTCGCCGCTGGGCAGGAAGACCAAATA 170 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.9 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : TACTATACTTAATATACGCGTGGTGCTAGTTAAATCGTTCTAGACAATAAGCCAAATTATAAGCTAAAATTGCAATTTCTAACCGGCTTTGAAAGCCTATCAGACTACGTGCTCGATTGTTCTCGGCATTGTAATAAGTCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31435-32625 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCLU01000058.1 Lactobacillus helveticus strain UC1266 58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 31435 28 100.0 33 ............................ CACCAATCACTCAATCAGCATTGGCCTGCGAAT 31496 28 100.0 33 ............................ TTTCTGCATTCAATTTTCATTTGTGTCACCTCT 31557 28 100.0 33 ............................ TAAATTCAAAAATAAAAAGTTTATCAAAAATAC 31618 28 100.0 34 ............................ CCTCGATATTGCTTTCATCACAGCTAACCGCTTG 31680 28 100.0 33 ............................ TACTAAAGCCGATGCGTGACAACATGACGGACA 31741 28 100.0 33 ............................ CGGTAAGATAGTAATTTGTTGTAGGCCCCTAGC 31802 28 100.0 33 ............................ TTATAAGGGCTTTCACTTTGCCCTGTTAGACTA 31863 28 100.0 33 ............................ TAAGCTTCTTTAGCTTCACGTGATAATGAATCA 31924 28 100.0 33 ............................ CTTGCTTTTATTCCTTTATTCCAGTCTCTATGG 31985 28 100.0 33 ............................ TATGTAATTCTTGTCCTACATCTTTGGTATGAG 32046 28 100.0 33 ............................ TTGTTTAGTAATCATTTGCATCTGTTGACCATT 32107 28 100.0 33 ............................ TGTATGAAACATGGCAGTGTTGAAGGCAGTGTG 32168 28 100.0 33 ............................ TAGCATTAGTAGTATATGTGTCTTCTTGATATG 32229 28 100.0 33 ............................ TGGTAATAGTTGGACAGGCTGGAAACAGTATGC 32290 28 96.4 33 .G.......................... TCATAGTGCTGAGAGGAGCATTCTACGGCGTTT 32351 28 100.0 33 ............................ TATAGCTACCATCACTTAATAGTTCAGCATCAA 32412 28 100.0 33 ............................ TAAATAAGGGAAAGGTGTTCGGTATTTTTGAGC 32473 28 100.0 35 ............................ CCAAATCACTAAATATACAACGTATTTAAGAAAGT 32536 28 100.0 34 ............................ TCTTATCTATATGTGGTAGTATATAGATGTAAGG 32598 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 20 28 99.8 33 GTTTTCTCCACGTAAGTGGAGGTGATCC # Left flank : GACGCAGCGGTAAATCATGAAAAGCTGCCTGAAATTGAAGAAAATGATCGTTCAGTGTTAGGCGTAGTTGTCTGCAGCAAAGGCTATCCAACGCATCCGGCTCCTAATGTGAAGATCGGCAAGTTGCCTGAAGGTACTAATACCTATATCGATTATGCCAACGTGAAAGGTGATTTGGATAATCTGACAGGTGATGGCGGCCGCCTGTTTATGGTGATTTCGGAAGCTGACAATTTGGTCCAGGCGCAAGATAATGTTTATTCATATTTGAGCAAGCTTGATCTGCCAGATTGCTTCTACCGCCATGATATTGGCAATCGCGCTTTGAGAGATTAGATGTATGAAGAAAGTCCCGTTTGGGGCTTTTTTAGTTTGGTGAATATTTATGGGAGTGAAGAATAAGAAATACGCTGGTATAATTATTGTTGTATAAAATACAAACTGAATGAATTTCAGCTTTTTATTAATTAAAAATGGCTTAACGACGGGATTCTTTTAGT # Right flank : CTGAGTAAGGCAAAGTTAGACAAGCTTATAGATAAGTATGCGGGTTGGTTTATGGATAAGTTCTTATTACACTTTAAAACAATTTTAATAGCTGGTGGGATCCTTGTGATTATAGAACAAATCTACATGTTTTTAGCTAGCTGCTTAAGTAAATAAACAGGAGGTAAACAAAATGAGGAAACAGGCAAGTACACATAGTCCTAAAGAGCCTATGAGTAAAATAGTAAAATTGAGTAACTACCAGTTTAAAGTGCAGCGCGTAGGGCCAAACCTATATCACTTTATTCCTATAGACTTTGACCACCTGCCAAATGTGCATCCCTTTATAGCCATTGATAATAGCTATTGGCTACTTCAGTGCAAACCTGAAGAGTTGGAAGGCTATATAGTAAGCTTATCTAAAAAAATAGACACTATGGACCTAGAAAGTATGGACCACTTCTATGCAAGACTGGCTAAAAATAGCGCTAGCCCTTTACACTGCGAGCCGGTAAAAGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTAAGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //