Array 1 4347341-4345846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043046.1 Pigmentiphaga aceris strain Mada1488 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4347340 29 100.0 32 ............................. GACTTTGCTGATAACTTCGATGAGCGGAAATC 4347279 29 100.0 32 ............................. CTCAATGATTTCGCTTGCTGGCGGCGGGTTTA 4347218 29 100.0 32 ............................. CCCAATGGCGGGAAGGGACGCCATGTTCTCTA 4347157 29 100.0 32 ............................. TGGCTACTACTGATTTCTATCACGGCGTCGAG 4347096 29 100.0 32 ............................. TAGCTTTTGGTCCCCGCCCTTGGTGATCCTCG 4347035 29 100.0 32 ............................. TTACCTCGCGGTTCTTCTGGCGCTCCCAGTGC 4346974 29 100.0 32 ............................. CAGGTCACTGACTTGCAAGCGAGCGTCACGAC 4346913 29 100.0 32 ............................. TTCTCGTACTCCAGCGCGTTCCACTCGCGGAA 4346852 29 100.0 32 ............................. GCTAGCGGCAGCAGCGGCCATTTGCTCATAGA 4346791 29 100.0 32 ............................. GCTCTATGCGCCGGTCAGCGTGGCCACAAAGA 4346730 29 100.0 32 ............................. GCACCCTTATAGCTGCGCTATTGGGCGGAGGC 4346669 29 100.0 32 ............................. TTGGTGGTCCCGGCTGGTGTGCCTATGTGGGC 4346608 29 100.0 32 ............................. CAGGGAGATGTTTGATGGCATACCCGAGCAAA 4346547 29 100.0 32 ............................. CAATTTCTTTGGCGTGTGTGGCGCTGCCATCT 4346486 29 100.0 32 ............................. CCAATCAGAACGGCCTCGGGCGAGTAGCCGTG 4346425 29 100.0 32 ............................. TTGTAGCCAGAACCCTGGCTGTTCCGACGGTC 4346364 29 100.0 32 ............................. TCAGGGTAAACGTCAGTCCGTCGCCATCGCTG 4346303 29 100.0 32 ............................. GCCGTCGGCGTCACCAATCAATCGATGGCGCA 4346242 29 100.0 32 ............................. GCTTCGAGGCAGGATCGACACCCACATCAGCC 4346181 29 86.2 32 ............CGA...A.......... GTCGGTGCTCGGATGGCGTTCAAGGACGCATA 4346120 29 86.2 32 A...........CGA.............. CCCACCGCCGCTGTTTCTCCGCTGTTCGACGC 4346059 29 93.1 32 .............GA.............. GTGCGTGCACTGCTGGCAGGCACGAAGACATA 4345998 28 86.2 32 ..............-.TA.......G... TGCGCCGACTACTACGACGGCAATCAGCTGAC C [4345987] 4345937 29 82.8 33 A.......G...CGA.............. CCGAACCGGGCCTGGTTAACACGCTTGGTCTGC 4345875 29 82.8 0 .............CA..........TAT. | T [4345866] ========== ====== ====== ====== ============================= ================================= ================== 25 29 96.7 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : AACGCGCTGCGCATGGAAAACGGGTACTGCGTGGAAAGCAGTCACCACTGGTATGAAGACACCCAGGTACCCACGCGATTGGGTGAAGCAACGGTGAAGATTTTTCTGTGCCGGGATACTGGGTCGGAACTACAGGCTTGGCGTAATGACGGAGCCTTTGCATGGGAGCAGTCCGCCGTGACGGTTGACGCTCGCCATATTGAGGCCTTGTCGCCGGCGTGGAGTCAGCGCTTTGGTACGCAGATCGATGCGCTGAGAGCACGGCATCGATTGCTGGAAGCACCTGCGTTGTTGTTGCCGCTGGTGGCTGCGGACGGACGCTGGCAAGCCGAAACCGTACGGGCGGATGGCAAGGTGGTTTGGGCCGTGTATGACGCAGTGATTGGGTTGGTGTTTGAGGCGGTCGGCAAGGGCTGAAACAGGGGTGAAAATCTGCCTGGAAAATCGGTAGAATTTTCGAGGGTGGTTTTTCTCTTTAAAAACAATGATGTAGGCTAAGT # Right flank : GTCCACCAACACGTGCTTCGTCCTGGCAAATTTTCCCGCCGGGCTGATAACTTTAACCAGGCAGATGGTCTTACCCGAATAACCATCACGCCGCTCACTCACCCCGCAAACCCTGGCGGCACCACAAACTGGCTCAGCCCGGCCTGCTGCAACAAATGCGCAAACCGGATCGGCGTCAGATCCTCCAGAAACGGACCAATCGCCTGCGCACCAACGGGTAGCCCCAGGGCATCAAGCCCCAACGGAAACGCCGTCGCTGGCAAGCCCGGAAGCACCGGCAACCCTGCCCAGTTGAACAGCTCAAAAAATCCAAGCTGCCGCACCCCATCCGCATACGAAACCGGAATGGTGCGCGTCTGTTTGGGCGGATTCGGATCATGCCGAAACGCCGTCGTCACCAAGTTCGGTGTCAACACCAAATCGATGTGTTCGAAAATGCGGCTCCAGCGCTGGCGCAGCTGCATGCGCGCTTCGTTTTTCTCCAGCCATTCGCCATGTGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4352261-4350279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043046.1 Pigmentiphaga aceris strain Mada1488 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4352260 29 100.0 32 ............................. CTTTACGAATTCAATGAGTCCGGGCTGGGCGG 4352199 29 100.0 33 ............................. GGGTTCATGCTGGCGTGGGCGTCTTCCGATTGA 4352137 29 100.0 32 ............................. CAGGTAAAGGCTAACCCGAAAGCCATTCAAGA 4352076 29 100.0 32 ............................. GCGTAGGCACACATTCCTTCGCTTTCTTGCAC 4352015 29 100.0 32 ............................. CCGGTCCGTGATTGGCAGGCACGGTGCCTTGA 4351954 29 100.0 32 ............................. GAAAACTTCCTGCCTCGACCCGAGGAGCCGCC 4351893 29 100.0 32 ............................. TTGGCTACTACATGCTGAGCTTCCTCAGCGTC 4351832 29 100.0 32 ............................. TGCTGGGTTGCAACTTGCAGCCCAGCTAGGAT 4351771 29 100.0 32 ............................. TGTCTTCATTGGCTGGACTCCCGTTTTTTCTC 4351710 29 100.0 32 ............................. TGAGCCACGAATACCCACCCCGCGTAGGAGCC 4351649 29 100.0 32 ............................. CTTGGCAGTGCCGGCGCATCGGTCACTGTCGC 4351588 29 100.0 32 ............................. GAACTCGACCACGCCGTGCGCTCGTACCTGTC 4351527 29 100.0 32 ............................. GATGTTCAGCTGCGGGAGGCGTTCCACTTGGC 4351466 29 100.0 32 ............................. CCACTTCTACGCATCGCCCTTGACCCGCGCGC 4351405 29 100.0 32 ............................. GGAGATGAGGAATGAGCAAAAGAACACATACG 4351344 29 100.0 33 ............................. TATATCCCCCAGTGGCTCAAGGTGAACGGAAAA 4351282 29 100.0 32 ............................. ATTCGTTGGTCTTGGTGCGCACCTCTACACCC 4351221 29 100.0 32 ............................. CGCTTGGCTCGGCTGCGCAACGACACCAAACG 4351160 29 96.6 32 ............................A CCAGGATGCGCGGGGCCACGCCAAGCAGAGAC 4351099 29 100.0 32 ............................. CGAGCGGGACTTGCTTTTCGCCCGTTGGAAGA 4351038 29 100.0 32 ............................. GCCGGAGATGCAGCCGCGGCGATTCGTCTGGT 4350977 29 100.0 32 ............................. GTCGATCTCGACCAGGGTTTCTGGTGGTCCAA 4350916 29 100.0 32 ............................. CTCTTCTGCTCGGCCCGGATTTGTTCCGCGTA 4350855 29 96.6 32 ..................A.......... CATTCGTGACCAGTACGCAGAGAACTTCGGCC 4350794 29 89.7 32 .............AT.....A........ TTGGTCGACGGCGTGCAGGCCACGGCGTTGTC 4350733 29 89.7 32 ............TAT.............. ATCTGCCCAGGCATCGCTACGGGCTGCAATTG 4350672 29 93.1 32 .............AG.............. GGATTGCGCGCACGCGCTGGCTACATCCGTCG 4350611 29 89.7 32 .............AG...A.......... TAGGCCGAAACAAGGTGGACTAGAACGACCTT 4350550 29 96.6 32 ............T................ GCCGCGCGCAGTGCAGCGACCGTGATGTCATC 4350489 29 100.0 32 ............................. CAATGGTCCGACTACGCCACGGCGCAGGCTGA 4350428 29 89.7 32 ............T..............TA TACATCTCCAACGCCGAGAGCGTCACGTTCGA 4350367 29 86.2 31 .C.......T...AT.............. CCTAGATTGGCGCTGCGATTGCCATCTATAT 4350307 29 72.4 0 T........A.A.AT..........G.TA | ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.0 32 GTGTTCCCCGCGCGAGCGGGGATGAACCG # Left flank : GGCCAAGATCATTCCCGCGATTGAAGAGGTACTGGCCGCAGGCGAAATATCGCCACCCGAAGCACCACCAGAATCTGTCCCGCCTGCGATTCCGAATGCATCCAGCATTGGCGATGTCGGCCACCGAGCGCAGTAATGAGCTTTGTTGTCGTGGTGACTGAAAACGTACCGCCGCGTTTGCGGGGGCGGATGGCAATCTGGCTGCTGGAAGTCAGGGCTGGTGTCTACATCGGTGACGTGTCCACCCGAACGCGCGAGATGCTGTGGGAGCAGCTTGTTGCAGGCCATGAAAGTGGCAACGTGGTGATGGCCTGGGCGAGTAGTCATGAGTCTGGATATGAGTTCCAGACTTTGGGCGAAAACCGGCGCTTTCCGGTGGAATTCGATGGGCTGCAGTTGGTGTCCTTTGAGCCGTTGCAAGACTCTGAAAAAGACGCCTGAAAGTTGGTGGAATTTTGAGGGTGGTTTTTTCTCTTTAAAAACAAGGATGTAGGCTAAGT # Right flank : CGTCCATTCTCGAATACGTAATTCGATTTTTCGTTTTCGCCTCCCATCAAATCACAGCAAACTCAACGTCAAAAATTTCCCTCCAAGGCCAAACGGTGACCGCTCCCCCAAGACCTTCCTACTACGCCTACTGGGGCAAGGCCATGCCCGTCTCCCAGTCGGATTCGTCCCGTTATCACCTGCTGGCCTATCACTCGCTGGAAGTTGCCGCTGCGGGAAGTCGCATCGTTGATCTGCCTGCTTTCTCCCTGCACGACTTTGCCCAAGACTTGGGCTGGCCGCTGAAAACCGTCGCAGCGCTACACCGGTTTTTCCTGGCCATCCACGACCTCGGAAAATTCGCGCGCGCTTTTCAGCGGCTCGTCCCCGGCATGTCTGCTGACTTGGTGCCTGTCGTCGCGTCCAAGCGCTATGACGAACGACACGACACCTTGGGTTGGCTGCTGTGGCGCGACTATCTGGCGCAAGATTTCGATGGCCAGCCGCTTCCCAATCCTGAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //