Array 1 78669-77864 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCO01000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_9815_R1 NODE_6_length_194501_cov_1.4716_ID_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 78668 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 78607 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 78546 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 78485 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 78424 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 78362 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 78259 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 78198 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 78137 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 78076 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 78015 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 77954 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 77893 29 96.6 0 A............................ | A [77866] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96599-94801 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCO01000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_9815_R1 NODE_6_length_194501_cov_1.4716_ID_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96598 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 96537 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 96476 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 96415 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 96354 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 96293 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 96232 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 96171 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 96110 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 96049 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 95988 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 95927 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 95866 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 95805 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 95744 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 95683 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 95622 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95561 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95500 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 95439 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 95378 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 95316 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 95255 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 95194 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 95133 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 95072 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 95011 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 94950 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 94889 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 94828 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //