Array 1 1768-4477 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAE01000057.1 Cronobacter muytjensii strain MOD1-Md1s Md1s_S8_L001_R1_001_trimmed_contig_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1768 29 100.0 32 ............................. AAAAAACAGGTGGGTTTTGCCTGTCAGGGTGA 1829 29 100.0 32 ............................. GTAAAAAATTGGAGCGTTGAAACGTAATCGTA 1890 29 100.0 32 ............................. GCTTGCCCGCTGCGCGAGGAACCAGCTTTAAC 1951 29 100.0 32 ............................. GGCGTGGATACCGGCGGTGAGGACGGCGTGAC 2012 29 100.0 32 ............................. TGATATCGGCTGGCGCTGACCAGGGTAACGGG 2073 29 100.0 29 ............................. GCTAGTTTTTGTAGTTTTATCATCATCAT 2131 29 100.0 32 ............................. ACCGTGAAATCAACCCTGACACTGGCGACTAT 2192 29 100.0 32 ............................. GAGGGATTACCAGGCTGAATGAGGTATATTTT 2253 29 100.0 32 ............................. GTGGGGGTTACGACCCCGAGGACTCCTATTTT 2314 29 100.0 32 ............................. CCTGTCGTTTTCTTCTTCTCCCCCTTCAATTA 2375 29 100.0 32 ............................. CACCGCGACATCTGCCTGTTTAGCCATCGAAA 2436 29 100.0 32 ............................. TGCTATTGCCACGCGCTCGCGCTGCTTCGCGG 2497 29 100.0 32 ............................. CCTGTAGCTCGCGCATCGCTGATAAATCGACG 2558 29 100.0 32 ............................. TGGATGCAACCTGTTGAAGTTAACGTGATTAG 2619 29 100.0 32 ............................. CGCTGGTGGCGGTAAGCCAGGTGCGCGGGCAT 2680 29 100.0 32 ............................. ATGAAGCCCATTTTTTCCAACCTCATGGCGTA 2741 29 100.0 32 ............................. GCAAAACGCGCATTACTGACGCCGTCAGCAAC 2802 29 100.0 32 ............................. AACGGGCGAAACCTGACCCGGCAAAACATCGA 2863 29 100.0 32 ............................. TTTATCAACTTGCCCGTATTGAGCGCCGTCGA 2924 29 100.0 32 ............................. AACGCTCTTTGCCGGCGCATTGGCACCAATAA 2985 29 100.0 32 ............................. GCGAGCCAGACCATTTCCCTAATCCGCCCTTT 3046 29 100.0 32 ............................. GTCACCGGCGCGCTAACCGGCACGGCCATCGG 3107 29 100.0 32 ............................. CCAACACCGTGGCGCCGGGCGAATCCCACGCC 3168 29 100.0 32 ............................. TGGAGGCGCTACTTGAGGCCCAGCAACAGGCC 3229 29 100.0 32 ............................. TTTGGGAGCAAATAGAAAAAACAGGAGCCTCA 3290 29 100.0 32 ............................. CCACCGGCGCAGCAGGGCGCAGGCAAGCAGAC 3351 29 100.0 32 ............................. ACATGATAGCGATTGACGAAGAGGAGGCTATA 3412 29 100.0 32 ............................. TTCAATAATCTCATATGCGCCCAGGACAAGAG 3473 29 100.0 32 ............................. CACCACCCTGTTCGTGAACACGTCGTATTGCC 3534 29 100.0 32 ............................. GAGTGGATGTGGGCAAAACCCGACGCAGGGCT 3595 29 96.6 32 ............................C TCCTGTGCGTCGCTCGAAGCCGCTATGGCCTC 3656 29 96.6 32 ..........T.................. GCTGACCCCAATCAGTGTTTATGACGGCCTTA 3717 29 100.0 32 ............................. TGGTCCGGGCCAATCTCTGGCGAAAAACCGAG 3778 29 100.0 32 ............................. CACGATTTCCCAGGCACGAATGCGGCGCGGGA 3839 29 100.0 32 ............................. CTGTAGAGAGCGGAACTGTCTTCGTTCAGAAT 3900 29 100.0 32 ............................. TGGCGGCGCATATCGACGACGTGCGCCCCGTC 3961 29 100.0 32 ............................. TCTGACTGACTGATGAGCGCCACGACGCGCCG 4022 29 100.0 32 ............................. AAACGCGCAATTACGTGGCGAAAGTCACGGGC 4083 29 100.0 32 ............................. CAGGTTTATAACGGTTGTAAAAACGCAAAAAA 4144 29 100.0 32 ............................. CATATACAACGTCATGCATAGCCCAAAAGAAC 4205 29 96.6 32 ..A.......................... AAAGTTGGTTTTGACGCCCTAATTGATCAGAT 4266 29 100.0 32 ............................. CCCGCGCACTCAAACGCACGGCGCAGCATATG 4327 29 100.0 32 ............................. TCGCCACCCTCCCGCATGAGCTGGTCAATCAA 4388 29 100.0 32 ............................. GAGTAACCGAGGGATGACAGCTGCTGTTTAAC 4449 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAAGTGCTGGCGGCGGGCGACATTGAGCCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAGAATGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAGCTGCGCGCCGGGGTTTATGTCGGCGATGTCTCTAAGCGGGTACGTGAAATGATCTGGAATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTGGTGATGGCCTGGGCTACGAATAATGAATCCAGCTTCGATTTCCAGACGTATGGCGAGAACCGACGCATTCCGGTGGATTTAGACGGTCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGTTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGGTGTGGAAAATTTCCTTATAAAACAGTTATATATTTTTAGA # Right flank : ATCCAGCCAGCCGACGCCCTGTTTCACGCTCCTTTGACCATGATTGCGCAATAAACCGGCATCCGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGGCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCAGGCGCTCTCGCCGTCACCGTCACAACATGCTGCTTCTTCTCTTATCCAGAGTATCTGTCTCTACTTTTTCTTATCCGCGAAACGCAATATCCATTTCCGCCACGTAGCGTTATATATTTTGTTTTTTATTTGCAAATTCATTTAACTGTCATTTATTTGTCATCTTATTGTCATAATAGCTTGTCGAGTATCGCATTTTTGAAACGTCTTTTTATAAGAAAGAGCTTAGTGCTGGATCTTAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16229-15407 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAE01000032.1 Cronobacter muytjensii strain MOD1-Md1s Md1s_S8_L001_R1_001_trimmed_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16228 29 100.0 32 ............................. AGGAAAATGCTGGCGCTGATTCCGTACTTCCA 16167 29 100.0 32 ............................. GCTCGCCAGGCGCTTTGCAACAGCTGCATAGG 16106 29 100.0 32 ............................. CCTGGGCGCAAGAGGCTGGCTGGAAAGCAGTC 16045 29 100.0 32 ............................. GTGGAGCAGGCTTACGGCTCCGGGGATACCTG 15984 29 100.0 32 ............................. CGCTCATTCATGCGGGCTGGTTAATAGAAGAG 15923 29 100.0 32 ............................. GCGGCCTTTTTTATTACCTGAAATATGAGGAC 15862 29 100.0 32 ............................. CGGCGCAGCTACTTGAGGTATGGGGCGCGACT 15801 29 100.0 32 ............................. TCTGCACGTTGGGTTCAAAGCCTGAAATCGTC 15740 29 100.0 32 ............................. GCCGTATTCAATGATCTCGCGGCCAGCGTTTC 15679 29 100.0 32 ............................. CGGCGACAAACGTTTCCATTTTTTCATCCTTT 15618 29 100.0 32 ............................. TATTACCTTTTGGTGGGGTGTTTTCTGAATAA 15557 29 100.0 32 ............................. AATCTGCCCGGCCAGCAGCAGGGGCGAACCAT 15496 29 100.0 32 ............................. AACTTGCAGACATCAGAATCGACCTCATCGAT 15435 29 82.8 0 .........A.CT......AA........ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATTGCTTTTATTGTCGCCAATATCAACATCAACTACCGACGACCCGCAGTGCTGGGCGATCTGCTGACTATCACCAGCGAGGTAAAACAGCTTAACGGCAAAAGCGGCGTGCTGAGTCAGGTGATTACGCTTGCGCCTGAAGGCGAGGTGGTTGCCGATGCGCTTATCACCTTCGTGTGTGTCGATCTGAAAACGCAGAAAGCGCTGCCAATTGAAGGCGAGCTGCGCGAAAAACTGGAAAACATCACAGGCTAAATTCTGCAATCACGCCGCCTGTGCATGCAGTGATGGATTTCTCTCCGTTAAAGGCGAACAATCCGGTAGATGTTATCGGCCCGGAAGCACTGTAAAAAAATGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGATGTAAATGTTGGTAGGTTGTGGCGGGCGATAAAAAGGTAAATAAAACAAAGTATTGTCTTTAGA # Right flank : GAACAGGGCGGTGAGTAGAGACCAGAGAATACGCGCCCTCTGGCCCCCACATTCTTCAGCGGCGTTTATACTTCAAAGCCAACGTAAAATTTCGCAACACTGCGCAACAAAGGAGAGACGATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGCTGCACGCGCATCTTATTTGCCACTGCCTGCTGATTGAAACCCAAAACGACGGGCTGGTACTGGTGGATACCGGCTTTGGTCGCGACGATATGCGCCATCCTGGCCGTCGGTTGCCGCTGTTTTTTCGGGCGCTGAACAATATCCAGTACCGTGAATCATTAACGGCGTTGCATCATGTTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGACATATCGTGCTGACGCATCTCGATTTCGACCACGCAGGCGGTATCAGCGATTTCCCGCATGCGCAGGTGCATCTGATGCAACAGGAGATCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //