Array 1 205058-206599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014672.1 Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 205058 30 100.0 36 .............................. TTATCCCCGGGGACAACCTGACCGCCCGGCCCTTGC 205124 30 100.0 37 .............................. AAGAAAAATAAAAGGGATGCTGTTAAGATTTTTAATG 205191 30 100.0 35 .............................. GTTTCAATGCTCTGAACATAACCATCTCAGGAGAA 205256 30 100.0 36 .............................. CGGAAGAAGTGAAAAAACAGCTTCATGGGAATAGGG 205322 30 100.0 35 .............................. TTCACTCACAGCTTCACCTTCTCCGTAGCTTTTTC 205387 30 100.0 34 .............................. TCCTGTTCCCGGTATATTTTCAGCGGCAACTTTC 205451 30 100.0 36 .............................. GGGTGGAGGGATCAGTTTTTGATGAAACCTTTAGCA 205517 30 100.0 35 .............................. TTCACTCACAGCTTCACCTTCTCCGTAGCTTTTTC 205582 30 100.0 38 .............................. GTCGGGTCGGATATGATAAACCTATATGCTCCCTCTAC 205650 30 100.0 36 .............................. TTCTGATAATCAATAACGTAATAAGTTTTTTTCATA 205716 30 100.0 35 .............................. GTTGTACGATGTCTGTATAGTCCACGGTTGAAAAA 205781 30 100.0 36 .............................. GGAATGGGCGGTCTTTCCAATAAAAGAAGAAATGTA 205847 30 100.0 36 .............................. TTCTTTATCTATCTCTTGAAGTATTTCGGATATTAT 205913 30 100.0 36 .............................. TTGGAATGGATGTAATTTCGACTGGTTGATAAATTA 205979 30 100.0 35 .............................. ACGGGCACGACTCGACAGAGATCATGCAGAATTTG 206044 30 100.0 36 .............................. TGAGCAGGAACGGGAGAAGCTCAAGCAGGAAATTCA 206110 30 100.0 35 .............................. GCAGGCTAAGGCAAAAGCTGATGCACTTCTGCAGC 206175 30 100.0 36 .............................. ATGTTCATAGGAAACGGCAAGGAATTCGCTGTAATG 206241 30 100.0 36 .............................. GAATTACTACTCCACCAATCACACAAAGGATTATGT 206307 30 100.0 34 .............................. GTTCTCATACATAACTGGATGTAGCCTTTATAGC 206371 30 100.0 36 .............................. TGTTATTGGCTTCCAGAATATAACATATCGTATTGG 206437 30 100.0 37 .............................. AAATTCATGAAAAGTCGCCTTTTGTCATGATGTTTAG 206504 30 100.0 36 .............................. AGTCTTATGTAATAATATGGCTTTTCATTCTTATTT 206570 30 80.0 0 ....C....C...A......AG......G. | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.2 36 GTTTGAAGTTTACCTATAAGGAATTGAAAC # Left flank : AGTTCAGAGTGGAAGGTAAGATGTGGCATCTGAGGACTTTGTGAAATTTTACTTGGTGGAAGAAATATTAATATGATATAGAAAATTATAGAATCTAAAGAGACAGCAGAAAATGAGGCAATAGATGGGGTTGATATCAAACTGCACAAAACAGTTTTTTAACTAATAAAAAGGTAGTTTTTAAGTTAAAACGTTATTGATAGTTATCACCTCCCTTTTTAGATACAAACAATTTAGGAAAAATATTACAGAAAATATTGTGAATAAACAAAATAAAATACAGCAATATATGTATTACTGCCTAAAAGGCAGCCGTTGCAATTTGATAGAATATATGGTAATATTTATCCTAAATAAATCTGTCGATGTCCAGTAGCTTAAAAACCACCGGGGATCGACAGATCTAAAAATCGGGCAATATCAACTATTTGCGGATTTTAATACTCAAAAATTTAAAAATTGTGATTTTATAAAAACGGCTTTTTATGCGGGTTTTACGG # Right flank : CATACTTTCTTCGTTGGCACAGTATTTTGCATGGCTGTTTTAAGTCTACATATGAAGTGGGCCCTCGCAAAGAGTTCTCTATGCACACAGCTTTGACATATCTTTAGCTACCTAATTTGCTTCTACAAATCCCTTCAGGCCTATTCCGGATGAATATATTGTTCAGGGAATTTTCAACAGCGAAGTGTTGAGGTACCTGTTAAGGGAACGGGGTTATACCGGGAGCATCACACTTATTGAGGGCTGTGTGAAGTCACACCGGCCGGTGTTGACGGATCAAGCAACTTTGTGCTATTTTTTTGAAATGGAGGTAATTTTATATGAAAAAGATAGAAAAAATACTCATTGCGTTAGCCGTCATTTTTCTATTTTCTGCCTGTGAGGGAAGAAATGCAGATAATTTTATTGGTCTGTCGGAAATTGATGACTTAAGACAGGAAACGTCAACAAAAAAAGAAGCGGAAAGTAACAGTGAAGCATGCCCTTCCAATACTCCCATA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 781568-783003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014672.1 Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================ ================== 781568 30 100.0 34 .............................. GATTGTTTGCCCTCTGTCATTTGCTGAAATATCG 781632 30 100.0 34 .............................. TCACCATCGCCTTTACTATACAAGTGTGTTCCTC 781696 30 100.0 36 .............................. ATTTCGGTGATGCACCCCACGAGCATAAAATGCTCG 781762 30 100.0 35 .............................. GTTAGGTTTCTTTTTAGATTCTATGATACCTTTTA 781827 30 100.0 36 .............................. TCAAAAATCTATATCACTTTTTACTATATCCCTTGT 781893 30 100.0 36 .............................. ATCGATAATGTCAATTCTACCTAAAGGGTAATAATC 781959 30 100.0 36 .............................. GTGTTTTTTAATATATTAAGTAATGTTTTATCATTT 782025 30 100.0 35 .............................. GCAGTAGTCCGTATGCTGGTAACATCCGGCCTCTC 782090 30 100.0 35 .............................. CATAAATAATTATTTAGAGGCGCCTCCTGAAAGGC 782155 30 100.0 36 .............................. TTACATGTTGCTCATACAGTGGAACAGGTACCGTAA 782221 30 100.0 33 .............................. CTTTAGCGTCAAACATTACATATATCCCTCTAC 782284 30 100.0 35 .............................. CGAACACCAGGACCACAGCAAAGCGGTGCGTGATG 782349 30 100.0 34 .............................. CCTCGACATTGGATATAGGCCCAAATTCACAAGA 782413 30 100.0 34 .............................. CCTTCTGAAAGGATAATAAAAATAGCCGTCGCAA 782477 30 100.0 34 .............................. CGACAGAGTTCTTCTTATTAAAATCTCGGGAACT 782541 30 100.0 35 .............................. ATGATCGTTGTGGAAAACGAATACTTCGTTTCCAC 782606 30 100.0 34 .............................. TTATTAAAAGCGTTTAATGCACCGTCTATTGTTA 782670 30 100.0 144 .............................. TATTTTCATTGTGGGAAACCTTCACATCGAAGGTATTTCATACAATTTATATTGAAAAGGATAAAACTAATGGTATAATTTAAATAAACGTTTTGTCTGTCGATGTCTAATGAGTGTTAAATTGACTTTATGAGGATTTTACGG 782844 30 83.3 35 A...GG...A.......G............ TATAGCTCTTTTAACTTTTTGACGCCCTTATTATC 782909 30 93.3 35 A...T......................... GAATATGTATAGCCCTTGTTGTTACCACACTCTTC 782974 30 76.7 0 .A......CC.T...G.G.......A.... | ========== ====== ====== ====== ============================== ================================================================================================================================================ ================== 21 30 97.8 40 GTTTAAAGTTTACCTATAAGGAATTGAAAC # Left flank : TTTTTGCAATAATCCTTTCTATAGCTTCAGGTGAAAATACGTTCTTCTCAGGATGTTCAATAACGAGGTTCTCTATATATCTTTATTGATAATCTTCATGACGCATTCTTTTGTTCTTTTTCTATTAGAGCATTCATACGTCACGTAAAAGTTTTATTTCTACCAGTGGACAAGCTGCAGTTTCCTCGCGCCAGTATAAACCCACAAAGCCGGCATTATGACAGGAACGGCAAGGGAAAAAAGTAACTGACAGCTCTAAAATTAAATCCTTCCTGTAGCGCTACCCCGGCTTCGTTCTGGGTTATTAATTTAATTTGCAAATTGGTAAAATATATGGTAATATTTATCAATAAATAATTCTGTCGATCTCCGGTAGCTTAAAAACCCCCGGGGATCGACAGATGTAAAAATCGAGCAATATCAGCTATTTGCGGATTTTAATACTTAAAAACATGAAAGTTATGATTTTATAAAAGCGGCTTTTTACGAGGGTTTTACGG # Right flank : CCCGTCAAGCCGTATGTTTCCACCTGTTGTGGCGCTTTTGTCTACCTATAAGGATTTTTCTCGTCTATAACCGAACGGATGTTTGTTATAATATCTATGGGTGAATTCTATGAAAGCTCTCATGCAACCCGTAGACATGATAAGCTGCACTTTAACGAAGTGGAGAGCTCCGCAGACTGTCAGGTTCATGGCAAAAGGTAAAGACGGTAAAAAGAACGAGAGTTTGAAGTCACGTTGAGTTGAATTCATGCAAAGGAGAAATGGCTGAAAATCATCGAGCATACGGTAACGGCTGTATGCAAACGGTATATTTGATTTTTAATTTTAAGAGACGGGATTTATGTGACATGAAAACATTTTACAGTATGAGTTTGGAGACATCTGAAAAATAAAAAAATTAAAGAATAAAAGATGATTTTATCTTTTTTTGTAGAAATAAAACACTAATTGTAGAAATAAAACATTAATAATATGTGCCAAAGGGGGATACTATGGATTTA # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 785865-786413 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014672.1 Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 785865 30 100.0 35 .............................. GCAAGGATTTTTTTATCCTCTCTAAATCGTCATAA 785930 30 100.0 33 .............................. GATAAAACAAGCTACCCCTGAAGTACTCCATCG 785993 30 100.0 35 .............................. CAAATATTCTAAATCCAATCGCAAAAATTGATATT 786058 30 100.0 35 .............................. CGGGGAAACATTAACGTTATTAAATCAAACACAAA 786123 30 100.0 35 .............................. TAGTGAAAGCAGAAAACGCAACTTAGGCAAAACGA 786188 30 100.0 36 .............................. GAAGCCGGCACTAAATATGTTTCCCATGTGTCAAAA 786254 30 100.0 35 .............................. CGTTTTTTGACGTAGATAGGTTGCTTCGGTCGCCC 786319 30 100.0 35 .............................. GTGTTGGTATAACCCCCTCCACACAACCACATCGC 786384 30 70.0 0 .................A.A.GG..CTTTT | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 96.7 35 GTTTGAAGTTTACCTATGAGGAATTGAAAC # Left flank : AATGGTCCTTGGATTGAAAAAAGAAAAATGGGAGTGAAAGAGGAGTTGAAAGGGATGAGTAATCTCAAGCAAAAACTTACAAGCAGAAAGTTCTGGATAACCATTGCAACGGTTGTCTTTATTATCCTTTCTGAGGGATTAGGCTGAAATATTGACAATGATTTGTACTGGAAAATTGTAACAATGACGCTCGGCTATATTTTTGGTGAAGCAGCCGCCAACATTGCAAGAGCGAAGAGTACTGACAGCGCAAATGCATAAACATTATCTGTTACCTGCTTACCCCGGCTTCGGCCGGGGGTTTTTTATTTAATTTGCAAATTGGTAAAATATATGGTAATATTTATCAGTAAATAATTCTGTCGATGTCCGGTAACTTAAAAAACCCCGGGGATCGACAGATCTTAAAACTGAGCAATATTAGCTATTTGAGGATTTTAATGCTTAAAAACTTGAAAGTTATGATTTTATAAAAGTGGCTTTTTATCCGGTTTTTACGG # Right flank : TTACTACCTCCAAAGCATTGAGCCAATGGAGAGCTTCAGCACTTTTCAGGATAAATGAAAAAAAGTACAATGCAGTGAGAAACATGTGTAGGGTTCTATGGCCGGTTTCAGCTCTTTTTTTATAATTTAGTTAAATGCTGATGTATTTTTTTGGAACAGGAATTTTTTGTTATATTGAATTATTTCGCAGAAAGAGCTTGAACAAGCGATGAAAGACAAATGGCGGTTTGGCAATGAATAATACTGTTTTTTTAAAGAACAGAAAGATTTTTAAAACTTAAAAGAATTTGTATATTGAATTGAATATATGATATATAATGTAATTATGTATATTTAAAAGTTAAAAAGGGTGATAAAATGGCATCTGAAATATATTTAGCAGGCGGATGTTTTTGGGGAATGGAGAAATACCTCTCACTGATTAAGGGTGTTGAAGCGACGCAGGTGGGATACGCGAACGGAAAAACCCTGTTTCCCACTTATGAGGAAGTCTGCCATAA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGTTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 4 1526875-1527496 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014672.1 Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1526875 30 100.0 34 .............................. TCAGCAGGTACGTTGTATCCTCGTCCCGCTGCAG 1526939 30 100.0 36 .............................. GAAGTCTGCAGCAGTAACCTCGACTATCTGAGCAAC 1527005 30 100.0 36 .............................. GAAGGACGTAAAAAAGTAGTAAAGGAAAAAATCAGT 1527071 30 100.0 37 .............................. TCTAATTATCCCTGTTCTTTCATCCATCACATTCCAT 1527138 30 100.0 35 .............................. CTATTAGTCCATTTATGGTAATTTATAAAACACCT 1527203 30 100.0 36 .............................. GTCATCACCAGCTAAAGAATCCCTGTCAGTTTCAGT 1527269 30 100.0 35 .............................. TGAAAAAATCCGCCTGTCTTTCTTCTCCGGCCTTC 1527334 30 100.0 36 .............................. CGCTCCGCCGAAAAGGAACTATACCAGGGCACTTGG 1527400 30 100.0 37 .............................. GCTGAATGTTATGATGAAAGACCATTTAAAGATTTTC 1527467 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 ATTTACATTCCATTATGGTTAGATTAAAAG # Left flank : CATCGATAATACGGACAATATTTGCCCAGAATGATCAGGAATCTGCGAGGGAACAGTTAAGGCATGTAGTAGATGAGCTTAAAAATCGTTTTCCAAAAGCAATGAAAATTCTTGAAGAAGCAGAAGAAGAAATCCTGGCATATATGGCTTTTCCTCGTGAGCATTGGGCACAGATACACTCTACCAATCCGCTGGAGAGACTTAACCGTGAAATTCGCCGTCGAACGGATGTTGTTTGCATATTTCCAAATCGTGAGGCGGTAATCCGATTGGTAGGAGCAATGCTCATGGAACAAAATGATGAATGGAAAGTAGGGCGGCGTTATTTCAGTTTGGAATCAATGTCAAAGATTACATCGATAAATGAATTTACATTGACGCCAGTAGCTTTATTACATAAATGAGGTGAAAAAATGATAAAGTAGAAATCATTTTACACCACTTGACAAGACACTATCTTAAAAGAAAATACAGGCATACGTTAAAGAATGGTATGATAA # Right flank : GGCTGAGTATAATGCCCCCACTTGTCAAGACAATTTTTTAGCTTTTCTAAGTTAGGTTCTCCTTTCTTTATTTTTGTATAATTATAACATTTATGCATTCTGTTGGAGGATGTCAAGGGCGAGCGTAAGCGAGTTCATCTTGGCCCTTGACATCCAATGCGCATACATCCTTTTGCTTTCCGGTCTGTTATGACAGACCGGCTGCCTTCCGGCGAGGACGGGGTTTGGGGCAGAGCCCCAAGGTTTTATACGACTGCCGGAAGCTGCTTACAACCCCCGAAGTAATACTCTGCCGGTGTTTTGTAATCCAACGACTGGTGAGGTCTCCGGTTGTTATAATACTCCACATATTCCCTTGTAATCTGCCGGAGCTGATGTCCTGTTTCGCAATCTTCAAGATAAAGCTTTTCCCATTTGTAGGATCGGAAGAAACGCTCTATCCGTTGGTTATCCAATGCTCTTCCTTTGCCATCCATAGATATTTTGATATTGTTGTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCATTATGGTTAGATTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 1532142-1530277 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014672.1 Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1532141 30 100.0 36 .............................. AATAAAATCGAATACATTTAAAGAAACAATAGTAAT 1532075 30 100.0 37 .............................. ATGTAATTGTAATCTATACCTTTTACCGTACTTCTTT 1532008 30 100.0 36 .............................. TGAATATCTCTCTATTTTCTTATATGTATCGAATGA 1531942 30 100.0 36 .............................. AATAACCATTACTATTTTTTCCCAAATGCTCCCTCG 1531876 30 100.0 34 .............................. ATTGTACCAATTAAGATTAGATGGGATTTGAGGT 1531812 30 100.0 35 .............................. GTAATTGGCTTAATAGTATTGTCAATAGCGTTGCG 1531747 30 100.0 36 .............................. TACTTTACAAACCTTTCAGCAGGCTTAATACAATTA 1531681 30 100.0 36 .............................. AAACATCTTTAAGACAATTATAAGACAAAAAAATAA 1531615 30 100.0 37 .............................. TTTTAACTTTTCTAAATGTTTTACAAGACCCCGAATT 1531548 30 100.0 35 .............................. CTAATAACCATCTTACAATCATATCGATTAATTCC 1531483 30 100.0 36 .............................. CCTTACGGCGCCTCCTAAAAGGAGAGCGCCGAAAAA 1531417 30 100.0 36 .............................. TGTTGTAAACGGAAAGTCTTGACCTTTATAATGAAA 1531351 30 100.0 34 .............................. TTCATTACAAAGCGCTAACTCATATATTTTTGAG 1531287 30 100.0 35 .............................. TCACAACATCCTCATATTTATATATAACTTCTATT 1531222 30 100.0 35 .............................. GCTACAACAATAAATTTCTTGGTGCCGTCACTAAG 1531157 30 100.0 34 .............................. ATATTCGCAATATAACTAACAAACCAATAAATGC 1531093 30 100.0 36 .............................. TTCATCAATTAAATCAGTTAAATACGCCGACAAATA 1531027 30 100.0 36 .............................. TCTTTGAGTTTAACTCAACAACAAATTGTGTTGGCG 1530961 30 100.0 36 .............................. ACATTTTCACTGACTTCAGTAATGTTTTTATGAATC 1530895 30 100.0 36 .............................. TCTAGTAAAATAGACAGGTATAATAATTTCATTTCT 1530829 30 100.0 35 .............................. GAAAAAACGGGAAGTCAACTGAAAAAGCTGCGACA 1530764 30 100.0 37 .............................. ATACGACTTGCTGAACCGGAACGACATCAAAATCGGC 1530697 30 100.0 35 .............................. TGATTAACAAGTACTTCAAATTCAATCAAAATTGA 1530632 30 100.0 37 .............................. TAATTTTCTCTCCAACTGACACCATCATCCCCCCTTT 1530565 30 100.0 35 .............................. GCGGTTCAGGATCAGTATTTACAACACTACCAAAT 1530500 30 100.0 34 .............................. TTCGATGAACAAGAAATTCGTACAGGTTTTGCAG 1530436 30 100.0 35 .............................. TTGGATGATGTTATAGTTTATTCTCCTCCATTCGA 1530371 30 100.0 35 .............................. TCGAAAATTCACTCACATAAAATTCGTAATGCAAT 1530306 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 29 30 100.0 36 CTTTTAATCTAACCATAATGGAATGTAAAT # Left flank : CTAGGAATTGAAGCTTATTTCACTCATCCTTATTCCTCATGGGAGAGAGGAACTAATGAACGTCATAATGGACTTATTAGGCGTTTTATTCCTAAAGGAAAGGCTATAAAAGATTTTTCTGAAGAAACGATAAAACGGATACAACAATGGTTAAACAGCCTTCCACGAAGGATATTAGGTTACAAAACACCTGAAGAATGTTTTAATGAAGAGATACATAACCTGGTAAACAAAAATATATCAGCAATAGCCTGAGCCCTTCATCCAAGATATTTTAAAGCTCATTTGAGGGTAGTCAAGGGTAAAGACTTTGTCTTATCTATCGATAACCCTTGACTACCCTCTGCACTCGCTCAAGATAGTAGTTAAGAAGGGCTAAAAGATGATGTTGTACTTTAACACCTAAAATTATGGATGATTTCCACTATAGGTGTTGCATTTAATATTGCAATTAACAATGTAAATTTTGATACTGAAAATATAGGACAGAATATTTATAA # Right flank : ACAAGTGAACATAGCAGAAATATTATAATGATACCAGAAATTAAGACAGACAAAACGGCCAAAATAAGTTAGTATGGAACTATGGAAAAGAGAAGAAATTTTACACCGGAAGAAAAAGCAAAAATAGTGATTGAGGTCTTAAGGGAAGAAAAAACGCTGAATGAGATTGCGAGAGTTGTCAAGAATTTTGTGTCTGATTAAAGTAACGTAACTGGAAAATTTGTTGTATTTCATAAATGTGAGCATTTATCATTGGTACCGCTTTTTTCCATTTTGTCCGCCTCAAGTTCTCCCTCTGTAAATATATGTTAATTTCCAATACTTCGACAGAGTTAAAGTAACCACCCGATCTTATCCGAATTTTTTCAACTAGACTGTTGATACTCTCTACACTGTTGGTAGTATAAACATGCTTCCTCAAGGATTCGGGGTATTTAATGAAAGCCATATAATGTTCTGCTTTCTCCATGAGAATGTTCATATATCGGCTATATTTACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCTAACCATAATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 1533576-1535710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014672.1 Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1533576 30 100.0 35 .............................. TTGATTTCATATGTTTTATTTGTTAGAATATTAAG 1533641 30 100.0 35 .............................. CTGCCGCCTGCTGTTGTGTAGTTTTAGCCTGTGAT 1533706 30 100.0 35 .............................. CTCTTTATCCCTGTTCTTTCATCATTCAAACTCCA 1533771 30 100.0 36 .............................. CCAATTTTCCCATCTTTCTGGACTACAATCACTAAA 1533837 30 100.0 36 .............................. AAGGCGAAATAAAGAGCAAATGCTGATGTAGACAAC 1533903 30 100.0 37 .............................. TTACTGCCATTTCATCCAGTTTTTTAGTCATTTGTTC 1533970 30 100.0 37 .............................. GAAGTAATACTTAACCTTTTTGACTTCTTTAATCCAA 1534037 30 100.0 35 .............................. ATATTTTTGGCTATAGCCAAATCATTCAATGTCAA 1534102 30 100.0 35 .............................. ATCCCAGCAAATCCATTTCGGCTGTAGGATAGATA 1534167 30 100.0 36 .............................. ATGTTCCACCGGGTGCATCATAATAAGTGTTTGATG 1534233 30 100.0 34 .............................. CCAGAAGTACATACAGGGAATACTTCACAGGTTC 1534297 30 100.0 35 .............................. GAAAAAATAATCGAATTACTGAAAAATGAATACAA 1534362 30 100.0 35 .............................. CTGTTAGGCTCGTCTGTACCCGAGCGCCCGGGCCA 1534427 30 100.0 36 .............................. GATTTCTTCACCTGATACGTATACGGAGCAATCTTG 1534493 30 100.0 37 .............................. CTTTTTAATTTGATACATAAAGGGCTTACCTGAATGT 1534560 30 100.0 36 .............................. GTAAAGGTTGAGTCATTCGTTCAGAGTGATTATTTG 1534626 30 100.0 37 .............................. GTTTATAAAATTCGACTTTATTTCTTCAAACCTGTTC 1534693 30 100.0 35 .............................. ACGAGATTGGTTGGATTTGTAGATGAGGACGGAGA 1534758 30 100.0 35 .............................. TTGTCGAGTTTGACTGAAGTTGTTGACACTGTGTT 1534823 30 100.0 37 .............................. GGAATTGCAAAAAACCTGTAGAAAAGTATATAAAGTA 1534890 30 100.0 34 .............................. TGATAGCACAAAACTTTAGGCGTTATGTATATGA 1534954 30 100.0 36 .............................. GAAGTTTCCCCAACTTTTCATCCAAGGATTTGATTT 1535020 30 100.0 36 .............................. GACGTTTGGGTCTTGTTAATATCGAACGTTTCTTTT 1535086 30 100.0 35 .............................. TGCGCAGCATTGATGATTTTAGGTTCGTTGTTTAG 1535151 30 100.0 35 .............................. GCTTATAGAGAGTTTATAGCTGGTTTCAAAGATGC 1535216 30 100.0 35 .............................. TATCAAATTCATCAAAACATGTATGCTTTTCTGTG 1535281 30 100.0 37 .............................. TTACAATTACATCGAACTTTAAGAAATTCAGGAATTG 1535348 30 100.0 37 .............................. GTAATAATCGCAAAAAAAGACGGTTCAGGTCATTACA 1535415 30 100.0 36 .............................. CAAGTAACCAAATCCGGATCCTCATTCCCAAAATGA 1535481 30 100.0 37 .............................. CAAGCTGGCGCGTTGTGAAGCCTTCAAGCAAGGTGGA 1535548 30 100.0 36 .............................. TATCTATCCTACAGCCTAAGTGGATATGCTGGGATA 1535614 30 100.0 37 .............................. TCATATGGTGCGTTTGCTCTTGCTTGTCTCAGAACGA 1535681 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 100.0 36 ATTTACATTCCATTATGGTTAGATTAAAAG # Left flank : GCCACTTGGGGTCTCTCCTACATAAACCAACAACTGCATCTGGAGACCATTTTTCGCGTAGTATCTTATCTTCTGCAAACTTAAGAAAATCTTCAACTTGAGCCAATTTACGCTTTGCTCCGCAATTCATACGATTTTTCTCATAAACTGCCTGCCCTGTTTCAGGAAAATATACTTTGTATGTCGATAAATCAGTTCTCATCTGCATTGTTGTCCCTCTTTTAATTTCACGGCTAATTGTACTTGGCGAGCGACCTAGTTTATTAGCAATATAACGTTGACTCTTTCCTTCTTTTAAAAGAGCTGCAATCTGCCCTCTTTCATAAACACTTAAGTGTTTAAACTTATGCTCAGTTGTGGTAGACTTATATTGTACAGCCATAGTTGAGAACCTCCTGTATGTTTGGATTGGACACCTAAATCATACATGATTTCTCACTATGGTTGTCAATTTTTTATTTCATTTTACTGTTGCATTTAATTTTACAACGAACCTCAAA # Right flank : GGCGATTGGATATAATGCTTGAATTTCTTACTTTTTAAGTACCGTTTCTGTCTATGATTTAAGATTAAAAAAAATATTACATCTTATGTATTATACAATTTAAATAGATTATTCATTTTTCAAAGTCCGATACATCTGTCGATCCCCCGTATATTTTCCATTACTCAGGATCGACAGACAATAAAGTAACTCGATTTTTAAGCCATACGGATGTTTTTATGTAGATATTCCTCTTAATCTATATTCTAATGAACAATAAATAAATTTGCAAATTCATTTAAGACAAAACGTAAAATTTAAAAAGGCAGGCACCTGTCTGCAGCGCCTGCCCGGATTCAAAAGCCATATGTTCCATTCTGATTTTTTCCGGCATGTCTCTAAATTCGGTACAAGCCACAAAATCACGCTTCAATGCTGCCCTACGTTAAAATAATGTAGCTGTATATCTGTTCCTTTCGTTTAATCTTTTATAGAAGCATAAAATTCCTTCATTACATAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCATTATGGTTAGATTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 7 1842488-1841998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014672.1 Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1842487 30 100.0 36 .............................. CCACATGGTAGATGTAGCCTGTGATGGGATGGTAGA 1842421 30 100.0 36 .............................. AAAAATAAGATTAGACCACATCAGTTAAGGCATAAT 1842355 30 100.0 36 .............................. GATTCGGGATTTGTCGACACTTCCCCAGTCGGCATT 1842289 30 100.0 36 .............................. CCTGTACTTTGGGCCTTTAATGCGCTTTCTCGCATC 1842223 30 100.0 36 .............................. ATGCAACAACCCAAAAAGAAGCGGCCGGACTTTTTT 1842157 30 100.0 35 .............................. AAGCTGAAGAAGCTATTAAGGCAGCCGGGTTACAT 1842092 30 96.7 35 ......................G....... TCTTTGGTGGGATTAAGCTTAAAAATTCTAATTAA 1842027 29 80.0 0 ..........TC.....G...T.-.....A | G [1842011] ========== ====== ====== ====== ============================== ==================================== ================== 8 30 97.1 36 CTTTGAATCTAACCATATTGGAATGTAAAT # Left flank : TTGCTTTAGGTGTAGAGGCCTGCAAGAAGGGATTGGAGGTGAGATTTTTCAGGACATCAGCGCTCGTGAACAGGCTGGCGGAACAAAAGAAAGCCGGAACATTGTCAGGCTTCTTGAAGGACCTGAATAAAGCAGATCTTTTGATCTGTGACGAATGGGGCTACGTCCCCCTCGACCGTATAGGAGCGCAGTTATTGTTTGAGGTCATATCCGAGTGTTATGAACGCAAATCGGTGATCATCAATACCAACATAGAATTTTCAAGGTGGGTGAACGTGTTCTATGACGAGCAGATGACAGGCGCCATTATCGACCGGCTACTTCATCACTGTCACTTGCTACTGTTTCCCGGCCAGAGCAACAGGATGCGCGAAGCTGTACTAAACACATAAAAAACTTACGGGAAAGTCACTGGGTTTACATAAAAATTCCCCACCGGTGCCTGGGGAAAAAATTTTGCAAAAGTGGGGAGATCTCACTTGCAAAAAACATCCTTCATC # Right flank : CATTTCGTTTTTAAGCCTCCCAAAGAACCCTTCACAAGCGGAATTATCTGCAGTACACCCTTTTTTGGACATTGACCTGATAAATCCTGCATCTTCCATCCTGGAAATCCAACCAGGCCATCTGTAGTGGCTACCCTCAGAGTGTACGATTGGATGCTCTGTATCTGAAAGACTGCTTATGGCTCCATCCAACATCGTATTGACTATCTCTGCATCCGGGCTGGTTCCTATTGCCCAGCAACGGCAGCTGCAGTCTCGTTTGTACAACTCTACTGCTTTCATTCTGTCCTCATATGAATACACATGGGGGCTCCTGCTCTATTTTAAGTCCAGGTTTTTGTCCGCACCCCCTTTGGGTAAAAATATTCCAGCGTTGACATTTGTTACACATTTTTCTACGTATTTAAGACTATAACGTAAATTCTCTGCAGGGTAGGGTAAATTACTGAACGTACATACTTTGAATTTAACCATAATGGAACTGTTTATGCCAATATTGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 8 1851580-1846569 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014672.1 Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1851579 30 100.0 37 .............................. TTTAAGAAAGAATGAAAACGGGTATCTGGATTGGTTC 1851512 30 100.0 35 .............................. GTACATGAATCTCGGTAATCCTACGAACTCGTATC 1851447 30 100.0 37 .............................. CTGTGAATCAATTTACCGTCGTAATGACGAATACCGC 1851380 30 100.0 35 .............................. TTTTACGTCCCTCTTTATAAGTAATCCTTTCTTTA 1851315 30 100.0 35 .............................. TGTAATGACCTGAACCGTCCTTCTTCGCAATTATC 1851250 30 100.0 36 .............................. ATATGTGTTATTTATTTGCAGGTATTCATCCTCACT 1851184 30 100.0 37 .............................. TTACAACAGCGAATATGACAAAGACTTTGATTTGACT 1851117 30 100.0 35 .............................. ATCAATCTAAATTCTAACTCATCAGGTGATGAAAA 1851052 30 100.0 37 .............................. TCTTAATTAATCCATAACTGTAATTAGGTAATAAGCC 1850985 30 100.0 36 .............................. CAAGGACGTGGAGCCTGGCACATTCATTTATTATTG 1850919 30 100.0 37 .............................. TCATTTTGGGAATGAGGATCCGGATTTGGTTACTTGT 1850852 30 100.0 35 .............................. GAATGTATTATAAACCCAAACCATCCTCTTTCTTC 1850787 30 100.0 35 .............................. CGGGAGGGGAAAACTTACTCAGGTCTGCTATTTTC 1850722 30 100.0 36 .............................. TCGATTCCACTCCTTATCCGCTTCGGTTGCCGAATC 1850656 30 100.0 36 .............................. ATTTTGGTTACGAATTTGGGGGATAGAATAAAAATA 1850590 30 100.0 37 .............................. TTGTATCACTGATGCAGTGGAGTGTCAAGGAGGTTTG 1850523 30 100.0 35 .............................. GCGGCAAGGTTTTCGCAATGAATCGCCGTGAAATC 1850458 30 100.0 35 .............................. AAATGAAGAAAATATAATGCAGACATCATATAAAC 1850393 30 100.0 35 .............................. TTATTCCGATACCTACAGGCAATATAGCGTTAAGA 1850328 30 100.0 36 .............................. TAAAAATTCTTCTAATCTTCTTGTCCCCTATAAACC 1850262 30 100.0 35 .............................. ATAGCTATAAATTTAAAAGATAGGCGTTAATACGC 1850197 30 100.0 37 .............................. GTAGAAGAAAAGGAGGTTGAATAACGTGAGTGCAATA 1850130 30 100.0 36 .............................. TAAGGAGGTTTTATTATGTTAATTTGTGAGTTAATT 1850064 30 100.0 34 .............................. CAACCTGATAAACTACCTCATACGTTTTACAATC 1850000 30 100.0 36 .............................. GCGGTTTTTGGGATTCTATCATCAATGCTGTTAATT 1849934 30 100.0 37 .............................. CCTTTAGCGCGTTCCTCAAGTCAACTATTACTGCATC 1849867 30 100.0 34 .............................. TTATGTAGAATCGATATCATTGACTGGAAGGAGG 1849803 30 100.0 34 .............................. TCCTTTTTAACTTTAGGAATTGAGCCTTTTAACT 1849739 30 100.0 36 .............................. CAAGAACGTGGAGCGTGGCACATTCATTTATTATTG 1849673 30 100.0 35 .............................. GATACAATAAATGTCAATCAAAAAACTGATAATAG 1849608 30 100.0 37 .............................. GAAACAAACGCCGAAAGGATACAAGTTGTTACCTTTG 1849541 30 100.0 35 .............................. GATATGCCCGCTTGTACCTTTATCAAGGCCTCTTC 1849476 30 100.0 36 .............................. TTATCATTGTTATATGAAAAAATAAATTCTTCAACC 1849410 30 100.0 36 .............................. GGAATATCTCCTACAAACCTCTCTATCAAACCCACT 1849344 30 100.0 34 .............................. TTTAGGTTGTCGTATCTTTTTCCATATAAAATCA 1849280 30 100.0 35 .............................. AACACAGTGTCAACTACTTCTGTCAGGCTCGACAA 1849215 30 100.0 35 .............................. AATGAAGTCAAACATACTTAAAGAAACAATAGTAA 1849150 30 100.0 36 .............................. GTTAACGGGTTATTTGGATTGACGAGGAAGGATAGC 1849084 30 100.0 35 .............................. TTTAACATTCCTTACCTTCAGCAAACCCTTTTTTA 1849019 30 100.0 34 .............................. GCATCCAAGGCGGACATTCCACTCACCGTCGTTA 1848955 30 100.0 36 .............................. TATAGAGAAAGGTATTAAGGCTGAGGAGGTCGCAGC 1848889 30 100.0 37 .............................. GAACAAGCGTTCTTGCAATGTATTCAGGGAACAGCAA 1848822 30 100.0 37 .............................. AATAGTTCAGCAGTTTTAAACCTGTCACCCAATTCCC 1848755 30 100.0 36 .............................. TGGTCTGGCATTATTGGCGTACTTGTCGGGTTCATA 1848689 30 100.0 35 .............................. ACAATACTGTAAGGGATGTAGATTTTCCGATTGAG 1848624 30 100.0 35 .............................. ATTATGGTAACTAATTTAGGTGATCGGGTAGTTGT 1848559 30 100.0 36 .............................. ACATATACTACCCAATAATCATAACCCTCTCTTACG 1848493 30 100.0 35 .............................. TTTATAAAGAAGGAAAAAACATCATAAAAACTATC 1848428 30 100.0 35 .............................. AAACATCGAAATAATTTGTAAATCTCAGTCGATAA 1848363 30 100.0 35 .............................. GTTTTAAAACCGGTTTATGTGATTTTGCATAAATT 1848298 30 100.0 34 .............................. CTTTTTTTTATGTTTTTATGCTTTAACTCAGTAA 1848234 30 100.0 36 .............................. TAAAAATTCAATTGGCGGTGTAATAGTTCTCTCGTA 1848168 30 100.0 34 .............................. GCTGAAGCAAGCCGGTTTTGTTGTGCGCGGGTCA 1848104 30 100.0 36 .............................. TTTTTAGTATTTTGAAAGGGGTAGGGGGGGGAAACT 1848038 30 100.0 35 .............................. CGGAAGAAGTGAAAAAACAGCTTCATGGGAATAGG 1847973 30 100.0 36 .............................. ATGTAAAATCCTAAAGGAATATAACAGCGAAGAAGA 1847907 30 100.0 35 .............................. GTTGGAACAATAGTCCAGGTTATGGTTGAACAACC 1847842 30 100.0 37 .............................. TGCAAATGTATGTGGCACACCAGCAACAATTGTATTC 1847775 30 100.0 36 .............................. ATTACATAAAAGAAAAAATGCATCAGGAAGGGGTGA 1847709 30 100.0 36 .............................. CGGCAACATTTTATAGGCTTTATTTTGGCGCGGGCA 1847643 30 100.0 35 .............................. TATCTACTATGTCACAATATTCGTCTCCGCCATTA 1847578 30 100.0 35 .............................. CTATTAATGTTAATCAACAAATTAATAACTTTTAT 1847513 30 100.0 34 .............................. TTTGCGTAATCTAAAACATAATACTTCATGATAA 1847449 30 100.0 35 .............................. GTTCTTATAATAGGATCTTCGCCGTGGTATCCGTT 1847384 30 100.0 37 .............................. GAAGGATACCGTGTGCACAAGATAGGTGAGGATGGCG 1847317 30 100.0 36 .............................. TCATAGTCCGCCTTGAGGACTACATGGTGAACAGCA 1847251 30 100.0 36 .............................. TAAAGCCCACCTTCTGCATATTGAAGGACTATTGCG 1847185 30 100.0 38 .............................. ACGGTTTCCCGGTGACAACCGAAACCAAGCGGACGGTA 1847117 30 100.0 36 .............................. AATTGCATTTTAGGGAAGAGTATCGCGCGGTATTTC 1847051 30 100.0 35 .............................. CCTGTACCGCCTTTATCTGAAAAGCTCCCTACGAG 1846986 30 100.0 35 .............................. ATTATCATTCTTTATTTTTTCCTCTTCATCGCCGG 1846921 30 100.0 34 .............................. CTTAATGGGCCTTGGGAGTGGGTCTCGGGCCTTA 1846857 30 100.0 34 .............................. CTTTTTTTTATGTTTTTATGCTTTAACTCAGTAA 1846793 30 100.0 35 .............................. GTACCATACAGTACATTTTTAGCTTGCATAGTATG 1846728 30 100.0 34 .............................. GAACTAAAATCGAGGGCTGCCGCCGCCCTCAATA 1846664 30 100.0 36 .............................. ATGATTTAAATGATGTAGTAAAGGCAGACTGGCTTG 1846598 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 77 30 100.0 36 CTTTGAATCTAACCATATTGGAATGTAAAT # Left flank : TTCAAAGAATGTAAAAAATACCTTGTACATGTTCAAAATTCAGTATTTGAGGGTGAATTATCGGAATCTCAGCTTTTTAAATTGGAAATGTCTTTAAAAAAACTTTTGAGAAAAGACAAAGATTCATTAATTGTATTCAAAACCAGGAACGAGAAATGGCTGGATAAAGAGTTTTGGGGAAAAGAAGATAATGCAACTTCAAATTTCTTATGACTTTTGTTTTTTCTCGTGAGAAAATGAGAAGTCTTAATGGCATCTACAGCAAAACTCGTGAGGATACCACCGTAGTTCTGAGTTTGACGAAGAAATAATTTCAGACTTGATCTGTCGATCATGAGTAGCATAAAATATATAGGGGATCGACAGACGTATCGGACTTTGAAAAATGAATAATTTTAAAAAATTTATATAGCTGTATGTAATACATATTTTTTTAACCTTATATCATAGACAGAAACTGTACTTAAAAGATATGAAATTCAAGTATTATAATTAATCGC # Right flank : ATTAAAAATTTGTAAATGCAGGGGGGAGGCGATAGATAGTGTCTTGTCAAGTGGTGTAAAATGATTTCTACTTTATCATTTTTTCACCTCATTTATGTAATAAAGCTACTGGTGTCAATGTAAATTCATTTATCGATGTAATCTTTGACATTGATTCCAGACTGAAATAGCGCCGCCCTACTTTCCATTCATCATTTTGTTCCATGAGCATTGCTCCTACCAATCGGATTACCGCCTCACGATTTGGAAATATGCAAACAACATCCGTTCGACGGCGAATTTCACGGTTAAGTCTCTCCAGCGGATTGGTAGAGTGTATCTGTGCCCAATGCTCACGAGGAAAAGCCATATATGCCAGGATTTCTTCTTCTGCTTCTTCAAGAATTTTCATTGCTTTTGGAAAACGATTTTTAAGCTCATCTACTACATGCCTTAACTGTTCCCTCGCAGATTCCTGATCATTCTGGGCAAATATTGTCCGTATTATCGATGATACCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 9 2384610-2383337 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014672.1 Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2384609 30 100.0 36 .............................. TGCCGATGGCAAAAAGGCCGAGCGAGCGATCACTGG 2384543 30 100.0 35 .............................. TCCCCGTCCTCATCTACAAACCCAATCAGTCTTGC 2384478 30 100.0 36 .............................. TCAAGGTGCACGGAGGTCCCCGGACTGGTTCATTAT 2384412 30 100.0 36 .............................. CAATCACATTCTAAACGTATTTCATAATCGTATCTC 2384346 30 100.0 37 .............................. TTAAAATTTCGCTGTAACTCAAAATAACCACGATTAA 2384279 30 100.0 35 .............................. ATCTTTTACTTTTATAGGGAATATGTTTTCAAAGG 2384214 30 100.0 36 .............................. CACTTCTGGTTCAGTAAATTTGTTGTTGTATAATAG 2384148 30 100.0 35 .............................. CCTCTGTAAAAGCGCTAACCGAACGGGGTGAAGTG 2384083 30 100.0 35 .............................. TTATGTGGTCCTATTGCATTTGAACTTAACCATCC 2384018 30 100.0 35 .............................. CCTGTGGTGGTTTAAAAAGCACTTCTGTATTGACA 2383953 30 100.0 36 .............................. AAAGAACATTTATCGTTGAATGAAAATGGATATTTA 2383887 30 100.0 35 .............................. TCATCGAATTGGGTTGCCCCTCCATAAAGCTTAGC 2383822 30 100.0 35 .............................. TCCGCATATTCATTTGGAAACATCTTTAAAAAATC 2383757 30 100.0 36 .............................. CGCTTCTTGGTCCATTTCTCCTGGTAGACTTTTTTC 2383691 30 100.0 35 .............................. TCCGAAAACAGTGTCAACAGTCTCCGTCAAACTAC 2383626 30 100.0 36 .............................. AACAATCGTGGAAATATTTGCCGGTCACATTGCCAA 2383560 30 100.0 32 .............................. CGATAATCAGTGTTTCATCCGTTACTTTCTTC 2383498 30 100.0 36 .............................. CGTCCGACCATCCAGAATACGACCCGCTTCCTTTTT 2383432 30 100.0 36 .............................. ATTACAACTTCATAAATATTCCTGTTATCAACTGAC 2383366 30 93.3 0 ....A.................G....... | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.7 35 GTTTGAAGTTTACCTATAAGGAATTGAAAC # Left flank : CAGTAAAATCATAATTTCAATTTATTTTTGAGTAAACAGCTTAGCGTTATTAATTGCTCTTAGCTATATTTTTACTAAAATTAATTATATGCACGCTTTCGAGTATTTTGCAGAATTCCGGATACGGTTTTAACCCACAGAATAAGACCATCTTGTAAAACGGGTATGTTTTAACATGCGTCATAAGTTTATTATACATGTGTATTATTAATGATTCCGAGCATTGGTATACTGGACAGGCTATTGCAAAGGATGAAGTAACTAAATCCTCCCTGTTGCGCTACTCTCAGCTCCAGCCGGGGTTTTTTATTTAGTTTGCAAATTGATAAAATATATGGTAATATTTATCATAAATAATCTGTCGATGTCCAGTAGCTCAAAAATACCCGGGGATCGACAGATCTAAAAATTGAGCAATATCAGCTATTTGCGGATTTTAATGCTTGAAAATTTAAAAATTGTGATTTTATAAAAGTGGCTTTTTATGCGGGTTTTACGGG # Right flank : ATAAATTACTGTCGATTTTATTTTCAAGCCATTCTGTGTAGTTATGAAGAAGTCGCGTACCGTAAATAATAGCGAATATGATTATTCTTTTGAGGTTTGTCGGAGCCTTTATTTATTCTTGAAAACAATAAAAGTAGTAGTATAATTTACATAAAAGGTTTATAATTAATCTGTCGACGTCCGGCAGTGTAAAAATCCCTGAGGAGCGCCAGATGTAAAAATTGAGAATTATCAGCTCTTTGCGGATTTTAATGAATAGCTGCGGGTTTTTAAAAAGGTTTTTTTGTGCGTATTTCACTGGTTTGAAGTTTAGCTGGGAAGGGATTAGAGAAATTTACCTACAAGGAATTGTAATATCCGTGGCATATTCATTGTTACTACTCCTATACTGTTTAAAGCCTACCTATAAGGAATTGAAACAAGGCAAAATCGCTGCCGCCCTCAAACGTAATATACTGTCTTAAGCTTAACTATAAGGAATTGAAACTTTCGTTTGTACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //