Array 1 541-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGIV01000102.1 Acinetobacter baumannii strain ARLG1864 ARLG1864_NODE_2.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 540 28 100.0 32 ............................ CATTTCCCACCATGCGAACATGCGTGTAACCA 480 28 100.0 32 ............................ TAACGAGCATGGTTTAGATTTAAGAGATGGTA 420 28 100.0 32 ............................ TTTTGAACTTGTGCATTCTCAATGATTGTTTT 360 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 300 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAATT 240 28 100.0 32 ............................ TGACCAAGCGGATTGACCGTATTGATAAATAA 180 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 120 28 100.0 32 ............................ TGATTAATATAATACACATATAAATCTTCAAA 60 28 89.3 0 ..A.....A............A...... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAAAGATATAATAAAAAAAAAAAAAGAATAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5631-6553 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGIV01000102.1 Acinetobacter baumannii strain ARLG1864 ARLG1864_NODE_2.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5631 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 5691 28 100.0 32 ............................ AACTCATACAGCGGTTCCAAGAGCCTATGGTA 5751 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 5811 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 5871 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 5931 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGTGTTTG 5991 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 6051 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 6111 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 6171 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 6231 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 6291 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 6351 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 6406 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 6466 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 6527 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 96.4 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51-1999 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGIV01000056.1 Acinetobacter baumannii strain ARLG1864 ARLG1864_NODE_68.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 51 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 111 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 171 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 231 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 291 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 351 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 411 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 471 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 531 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 591 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 651 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 711 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 771 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 831 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 891 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 951 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 1011 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 1071 29 100.0 31 ............................. TAAGTTGGATATGCCTTTGATACCAAGAAAC 1131 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 1191 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 1251 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 1311 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 1371 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 1431 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 1491 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 1551 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 1611 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 1671 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 1731 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 1791 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 1851 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 1911 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 1971 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 33 29 96.1 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : GCATAGATGATTTAGAAAATTAGCTATAAGCTTTTTGGCAACAACAACAGG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //