Array 1 479785-480607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026981.1 Pectobacterium parmentieri strain IFB5485 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 479785 29 100.0 32 ............................. TGAATAAATAACAGAAAACTTTCGAAAACGAG 479846 29 100.0 32 ............................. GGATTAATTTTCATTGAGGATTAAACAATGGC 479907 29 100.0 32 ............................. CAGATCGTTAGTATTGGAAAAGAAATAGCTAT 479968 29 100.0 32 ............................. TATCTACTGAAACGACAAACCCGATTTCAGTG 480029 29 100.0 32 ............................. AATTTTCAACTCTTATGTCATTTGTTACTGGT 480090 29 100.0 32 ............................. CATTTACCCGACAGGAATAAATAATATGGCGA 480151 29 100.0 32 ............................. CAACTTGCTTAGCTAAATGCGCTAGCTCGTCG 480212 29 100.0 32 ............................. CTACGGTAAATCCATGATTAGCCGCGCGGACA 480273 29 100.0 32 ............................. CAATTGCTGGCAGAAACCAAATCCGGACGCCA 480334 29 100.0 32 ............................. CCCCCTGTAATGCGCGTCAATCTCGCTTTCCG 480395 29 100.0 32 ............................. TACATAATCACAGTCGGCGTACAGCAACGCAT 480456 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 480518 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 480579 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTTATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 482384-483083 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026981.1 Pectobacterium parmentieri strain IFB5485 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 482384 29 100.0 32 ............................. ACGCCCCTGATTTGAGCGAATCATGCTGATTC 482445 29 100.0 32 ............................. CCGTGCTCAATCGGTATTGCGTGCGTGTTCTC 482506 29 100.0 32 ............................. GAGGAATCAAAGGCATCTGTCGCGCTGCATAA 482567 29 100.0 32 ............................. ATCACCTGTTAGCGGCTGCTTTTCAGGATCTA 482628 29 100.0 32 ............................. GCTCGCTGTTCGTGGTTGGTGCGAGGCCAAAA 482689 29 100.0 32 ............................. TTAATAAAAAAAGAGCAAGTGAGGGGATACCC 482750 29 100.0 32 ............................. ATAATATAAAAACATTGAGAGGCTATGATGTA 482811 29 100.0 32 ............................. CCCCGCAATTACACTTATGCGCCGATCTGGAG 482872 29 100.0 32 ............................. TACGGATGATTTAGCGAAATTAACAACAATTA 482933 29 100.0 32 ............................. CTGTGCTCAGTGCGTCGAGAAATACCGCTGAT 482994 29 100.0 32 ............................. ATTGGGGTTATCTGAAAGAACGGCCAGCCTAA 483055 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3816954-3818002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026981.1 Pectobacterium parmentieri strain IFB5485 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3816954 28 100.0 32 ............................ TGAGCCAGCAATCAGCAACCTACGCGGCAAGC 3817014 28 100.0 32 ............................ GGGTGTAAATGCCGAAACAGCCCCCGCAGTTA 3817074 28 100.0 32 ............................ GCGAAATCCCACCGCTCAAATAAAAAAGGCTA 3817134 28 100.0 32 ............................ GCCCGGTGCCTGCGGCGGTGCCAGTACCACAC 3817194 28 100.0 32 ............................ GAATGGCCCAACTACAGCATATGCAGTTCCAG 3817254 28 100.0 32 ............................ TGGATCAACAGCGCCGAGTATCGACCAATCAT 3817314 28 100.0 32 ............................ TAAATGAAACAGAGGGTGTATTTACTGAGCCA 3817374 28 100.0 32 ............................ TTTGCAGTGTATGACCAGTTAGCAACAGAACT 3817434 28 100.0 32 ............................ GTTCAGCCATCTTCTTTCTCCTGTTTCAGTAA 3817494 28 100.0 32 ............................ AACTCCCCCCGGCGGTCGAGTGACTTGCTCTA 3817554 28 100.0 32 ............................ TCATCGACCACGTCGCAGCCCTTGAGCAGCAG 3817614 28 100.0 32 ............................ GCGCCCAAGCAATGTCGGAACGACGCCAAAAA 3817674 28 100.0 32 ............................ AGACGACGCCGACGAGGTAAAGCACATCATTC 3817734 28 100.0 32 ............................ AAGCCAGCCGTATTGAACAGCACTGATCCCAC 3817794 28 100.0 32 ............................ AAATCGGGATTGCTGAAATCCAGAAATCAATC 3817854 28 100.0 32 ............................ ATCTGCATCAAAATAGTTAGTACTGGTATATC 3817914 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 3817974 28 85.7 0 A...........GC..........A... | G [3817999] ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAAAACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAATCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3836091-3839539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026981.1 Pectobacterium parmentieri strain IFB5485 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3836091 28 100.0 32 ............................ AGATTGAAGGCAATGGATCCAGAAGAAGCACT 3836151 28 100.0 32 ............................ AAGAATGAAAACGCGGTCAGGGTGAACGCTTA 3836211 28 100.0 32 ............................ CGAATTCGTCTACCACAGTTTCGGTTAGACTG 3836271 28 100.0 32 ............................ GCTGGCGCGGGGAAGTATGACTCAGTCGTCCG 3836331 28 100.0 32 ............................ GATAATAACAAACTTAGGCATGTTATTTATCC 3836391 28 100.0 32 ............................ CGCATTTCGGTGATGACCCCGTGAAAGTTTTC 3836451 28 100.0 32 ............................ GCGTCATGGAGAGCCTGAAAAAAGATGGTTTT 3836511 28 100.0 33 ............................ CGCTTGCGCAGAAGTCCAATAAAAATTGGTCGA 3836572 28 100.0 32 ............................ CGTCGCTGTCCCGCTGTGTTAGCTATGACCCG 3836632 28 100.0 32 ............................ GTTGGGCTACAGCACATGAGCAAGCTAGGAAC 3836692 28 100.0 32 ............................ ACTAACACTCCAATAATCGGTGGGGAGCAGAT 3836752 28 100.0 32 ............................ GCCAGATTATCCAGTTACGCGACCAAGAAACC 3836812 28 100.0 32 ............................ GCACCCAGATTGTTGGTTGGCGCTTGGCATTC 3836872 28 100.0 32 ............................ TAACTGGTGGCAATACTCGATCTTGTGGATGC 3836932 28 100.0 32 ............................ AGCACAGAGGCGGCAAAGCTTATATCCAGCCT 3836992 28 100.0 32 ............................ AGATAGCGCGGATATCAAACCGAATCCAGCTA 3837052 28 100.0 32 ............................ AAGCAATGTCGGAACGACGCCAAAAAAAGGCG 3837112 28 100.0 32 ............................ ATCACATCGGTTATCGATAGTGAGTCACTTGC 3837172 28 100.0 32 ............................ AGAACACAAAAAATCGACAGCGAATTCAGGTA 3837232 28 100.0 32 ............................ TCGCAATAGCGGGGCTTATTTTTGGAGATGAA 3837292 28 100.0 32 ............................ GCGCATGTGTCGTCGGCTACGAAGGTCAATCA 3837352 28 100.0 32 ............................ TTCTCTGGTGAGACCATTCCACCATTCAGCCA 3837412 28 100.0 32 ............................ TGAGTGGGCTACATTTACGCACTATCCCTGGC 3837472 28 100.0 32 ............................ AGCAACGTTAGATACAGCGCAGACAGTTACCA 3837532 28 100.0 32 ............................ TCGCAAAAATATCTTGTTTCGCTATTTCGCGG 3837592 28 100.0 32 ............................ CGATGCGATGCCGTTCGCACAGAACCGGCTGA 3837652 28 100.0 32 ............................ AGTGTGCGTAAGCGGAGAAGTTCCCCACCTTT 3837712 28 100.0 32 ............................ AGCCATTTTATGACAGGAACAGCCATAGAATT 3837772 28 100.0 32 ............................ AGCGCATCCTCAAGCGTCGGAACTGGGTCAAT 3837832 28 100.0 32 ............................ TGATAATCAACCGGTGTTCCACTAAACATAAA 3837892 28 100.0 32 ............................ AGTCCGACAAACAGCACCACCCGTTCAACCTC 3837952 28 100.0 32 ............................ ATTTGCCCTGCACTCTCTAGCCATCGATACAT 3838012 28 100.0 32 ............................ AGCAGAGAAGACCTTAAATCTCTTCACATCAT 3838072 28 100.0 32 ............................ TACGGGCAGAGCTGATCGCCAAGTTTGGCCGC 3838132 28 100.0 32 ............................ GCACAGGGCGGCGCGAATGTTTCCCGCGAACT 3838192 28 100.0 32 ............................ AACTAAATCCAGAATTCGCTTTAAATATTTGG 3838252 28 100.0 32 ............................ GGGTTAAATGTCACAGCGAGATTATACGTACC 3838312 28 100.0 32 ............................ GAATTTGCTGCATCAGGCAACAGCATATCAAA 3838372 28 100.0 32 ............................ AATATCCCGATCCTGCTCGTGCTGGTGAAACA 3838432 28 96.4 32 .............T.............. CGCTTGCTGTTTTGTACCTGATGGCATCAGGA 3838492 28 96.4 32 .............T.............. AGTACGTGAAAGATAACGCCCCACCACTGCCT 3838552 28 96.4 32 .............T.............. TCTATACACTTGAAACTGATTACCCAAATCCA 3838612 28 96.4 32 .............T.............. AAAGCTTACCGGAATCGAGTTTTGACCAATGA 3838672 28 96.4 32 .............T.............. ATATAGGCTCAATGATGAATTGTTAGATACCC 3838732 28 96.4 32 .............T.............. TCAATCGTCCCGTCAATCCACCCCTCATACTG 3838792 28 96.4 32 .............T.............. AGCCTGCTAACGATGCGATGGGCGATCTGACC 3838852 28 96.4 32 .............T.............. GGGGAAATTAATCCTTTCTGAGGTAAAGAAAG 3838912 28 96.4 32 .............T.............. GTATAGGCTCAATGATGAATTGTTAGATACCC 3838972 28 96.4 32 .............T.............. ACGCTACAGGTTCTTTCGCCGCCCTGTCATAA 3839032 28 96.4 32 .............T.............. CGATACACGAAAACCCAACGGTGATGATGGCC 3839092 28 96.4 32 .............T.............. CACTTAACGCAGTCGCTATCGCAGCAACCGGC 3839152 28 96.4 32 .............T.............. TCAATACGCTACAGCAGACAGTCGCGACACTG 3839212 28 96.4 32 .............T.............. GCCAGGCGAGGGAGCTGCACCGGACAGCGGGT 3839272 28 100.0 32 ............................ ACCTGATAGAAGTTCATGCTTGTGGAAAGAAT 3839332 28 100.0 32 ............................ TCTAGCCAGTTATGAATTTCAACCGACTTTGA 3839392 28 100.0 32 ............................ ACTGTTATTTCATACGGCACATCAGGTGGCAG 3839452 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 3839512 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 58 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAATTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAATTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGCGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //