Array 1 171218-173321 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPO01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712424, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171218 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171279 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171340 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171401 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171462 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171523 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171584 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171645 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171706 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171767 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171828 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171889 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171950 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172011 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172072 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172133 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172194 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172255 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172316 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172377 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172438 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172499 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172561 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172622 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172683 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172744 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172805 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172867 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172928 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172989 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173050 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173111 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173172 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173233 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173294 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189825-191867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPO01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712424, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189825 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189886 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189947 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 190008 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190069 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190130 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190191 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190252 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190313 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190374 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190435 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190496 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190557 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190618 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190679 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190740 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190801 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190862 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190923 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190984 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 191045 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191106 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191167 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191228 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191289 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191350 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191411 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191472 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191533 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191594 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191655 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191716 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191777 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191838 29 93.1 0 A...........T................ | A [191864] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //