Array 1 1703961-1706003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027194.1 Lactobacillus sp. CBA3606 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1703961 29 100.0 32 ............................. TTAACTTTTAGTCCACCAGCCGTGCATGTGTC 1704022 29 100.0 32 ............................. CGAGCCGACAATCTAATTTGGTCTAAGAAAGG 1704083 29 96.6 32 ............................C ACTTGTAACCCTACTCTACCAAGGGTTGTAAG 1704144 29 100.0 33 ............................. AATGGCAGGGCATCATTGGCACTTGGCTGCGTA 1704206 29 100.0 32 ............................. CATAGCCGCGAATGACGCTACCAATGCCGGTG 1704267 29 100.0 32 ............................. GTTAACGATCCATCCATGTTATTCAGTAAGTT 1704328 29 100.0 32 ............................. CGTCGTTCGTTTCACTACCAATTCCCCTTTCA 1704389 29 100.0 32 ............................. AAATTTACCTTCAATTTAGAAGGAAAAGTAAA 1704450 29 96.6 32 ............................C GTTCGAACTCTTCCAAGCGTAGAAACTTCTAC 1704511 29 100.0 32 ............................. ATCACAAACAGAATCGGCAGGTCACCCTTTAT 1704572 29 100.0 32 ............................. CCAGAAACGGCGCTATCAGCAAGTGCGGTTGA 1704633 29 100.0 32 ............................. GACAAAACAATCGTCAATGTTGTCATATCCAA 1704694 29 100.0 32 ............................. TTACTAATCCGGTTATAAAACCCGTTAGCATT 1704755 29 100.0 32 ............................. GATTATAATTTCAGCTATTCAAGTTCAGTTAA 1704816 29 100.0 32 ............................. ATAAAGCTAAAACTGATGACCAAATTATTAAG 1704877 29 100.0 32 ............................. TTCTGGCCTAGCGTGCCACGTCTGGGGTTCTC 1704938 29 96.6 32 ............................C GATAATTCAAAATGGACACAGTCATATTTGAG 1704999 29 96.6 32 ............................C AACAACCGTGCTCCCACCGTTATTAGATGATG 1705060 29 100.0 32 ............................. AAAATTAATTTCATGAAAACGGAAAAGGGCGG 1705121 29 96.6 32 ............................C TGGCACCATTTGTTTAGCTGTGTAAACCGAAG 1705182 29 100.0 32 ............................. CGGTTAATTTCACTCTATCTTACCCGCTTTCT 1705243 29 100.0 32 ............................. AGAAACCAAGGAAGCAGATATAACAGCACCTT 1705304 29 96.6 32 ............................C AAAATCACCTTTAATCTGATCTAGCGCCTCTT 1705365 29 100.0 32 ............................. AAGCAACGTTGATAAACTTTTCAATTCTTGAT 1705426 29 96.6 32 ............................C ATTTTTCTATAAAATATCATTGACATCTATAA 1705487 29 100.0 32 ............................. CACGGCTAACGTATATTCCTACTTGATTGATG 1705548 29 100.0 32 ............................. CACGGCTAACGTATATTCCTACTTGATTGATG 1705609 29 100.0 32 ............................. CAGTCAAAGATGAATTGCAGATCACTTTTACC 1705670 29 96.6 32 ............................C ACGTATGGGAAAGATATGTCTGACGGAGCACA 1705731 29 96.6 33 ............................C CAGCCCGAACATCTAATCCCGTATGCACCTCAA 1705793 29 96.6 32 ............................C CAAGCAATGCGAATATCACTGATGGGAAGGTC 1705854 29 96.6 32 ............................C GTCAGCTTACTGACGAAGCGGATATTCAAATC 1705915 29 96.6 32 ............................C TTGACGACGGTCTTGAGCGTGTATGTTTTTTT 1705976 28 86.2 0 .................-.....AG..T. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.4 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GCTAAAGATGCCATCATATCAATCGGTGCCGTTAGACGATTAGATGCGAATCAAGTGGATCATTTTTATCAGTTAATTCAGATCAAATCGGCAGTGCCAAAAAAAATCACGGCGCTCACACAGCTCACTACTGAAATGTTGAACACGACCGGCGTTAGCTTAGCTGCGGGGTTACAAGCATTGCAAGCGTTCGTCGGTGATTTACCCATCGTCGGTTACAATTTGCGATTTGATGAGCTTTTTCTGACAACTGGTTTTGAGCAAGTCGGGCAAACTGATTTAGCTAATCAGTGGTTAGATTTGCTACCGATGGTCAAAAAATCGAATAAATTTTTAGATAATTACCGGCTATCAACTGTATTGAGTGAATACGGTATCAAAAATAATACGCCACATAATGCACTTTCAGATGCGACGGCAACGTTCACATTAGCAGACAAGTTAATTGAAAACAGGGTTTTGAAAATTTAAGAACCGCGGTATAACAGTGATTCTTTAGT # Right flank : TATAATTATTCTAATGACGAAGAAAATTGTGAATAAAGACTCATTGAAAAAAGCTATCAGATTCAACGGATATTAGTAATCTTCAAATACGGGTATTTGTAGACCTACCTAAGATACAATCATTTCAAGATGGTAATAAACAAATAGCTTTAATTACCGCTAATGCTGTATTGGACACTTGAAAGCGGAAAATTATCTGACCTTACCATTCAATAATCTTGATTGAGTAGCTTTTACGACGGCGTTAATTTGTTATTATATGACAGATATACTGGAATTGGTAGATGGCTCCTTTTAAGCCGATTACAGCGACGCTTCCCATAACGTCTAAACGTAGGCTTCAGTTGTAGCAACTCCTGAAAGATGCCTCGAATGAGTTATTGAAAACTGGTATCGTTAAAAATAAATTCGGTAATAACGGGTACTGATTGTGCCATATAGTAATAGCCTACTATAGCTAGAATACTCAGTTCTAAAAAGAAATTAACTGATTAAATTTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2382436-2384111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027194.1 Lactobacillus sp. CBA3606 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2382436 29 100.0 32 ............................. GATCTATCCGCTTGGTCAATCAAAAAAATGCA 2382497 29 96.6 31 ............................C AGCCGATTGGTCACCGCTAACTGTGTTTCCC 2382557 29 100.0 32 ............................. GCCGGTCAGACCACGGGTTAAACGTGATTACT 2382618 29 100.0 32 ............................. TGGAATGACGTATTTTTCAATCTCATCTAACA 2382679 29 100.0 32 ............................. GATAAATCAGGAAATACAGCAACTTCGTGGGA 2382740 29 96.6 32 ............................C AATGAGAACAGATTTAATCAAGGAGACGAAAT 2382801 29 96.6 32 ............................C GTTAACAGCGTCGTTATTACTATCACTAACGC 2382862 29 96.6 32 ............................C TGGTTAGCATCGCTCACAGACGATTCTGTGGT 2382923 29 96.6 32 ............................C GTATAAAGGCGTCTGGTCGGATATTATGAAAT 2382984 29 100.0 32 ............................. ATCCGTCAGGATCAGATAACAACGCATAAATT 2383045 29 100.0 32 ............................. CCCCAGTAGGTATCCCCACGCTTTGTCCGTCT 2383106 29 96.6 32 ............................C TGCGATTTACAAAGCATTATCTGGTGGTAAGA 2383167 29 100.0 32 ............................. AATGGGTCGACTGTGGCTGGACAGACGGCGGA 2383228 29 100.0 32 ............................. TAAATTTAGGAGGTAAAGAACGGCATCAAAGC 2383289 29 100.0 32 ............................. CACAGTGACCGGTTCAATCCTAGTCGCGTCCC 2383350 29 100.0 32 ............................. TTCGTTCGAGCTAACGGCAGGCTCGTCTAAAA 2383411 29 100.0 32 ............................. CTTATTCAAAGTATTCTGTGATGATTAATTCA 2383472 29 100.0 32 ............................. TAGTGGTAGTAATGCGACAGCAATCCGGTCAT 2383533 29 100.0 32 ............................. GTTAGCGTGATTAATAAGCGGTAATTCGCCAC 2383594 29 100.0 32 ............................. CGGTTCCAGCCGGATTATTCGTTGCCCCGGCT 2383655 29 96.6 32 ............................C GCTATCGGCATTTGATTTAACAGCATTGAAAT 2383716 29 96.6 32 ............................C GGGAACAGCAGTATCACTGGAAGAAACCGCAG 2383777 29 100.0 32 ............................. TTCTGGTCGAACTTAGTAAAAATCGCCAAATA 2383838 29 100.0 32 ............................. GGCAAGTGGCTGGTATACCGATCAGTTTACCG 2383899 29 93.1 32 ..G.........................C ACCCATAATTTTACCCGCTAGTCCAACTGTTC 2383960 29 100.0 32 ............................. ATGACCGAATCGCAATTGCGCTAATTCCTGTA 2384021 29 100.0 32 ............................. TTGGATAGTTGGAAGCAACGCGGCGTTAAGCA 2384082 29 100.0 0 ............................. | T [2384107] ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.8 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : ATTAGTCTTGCATTTAAAGTTCTGGAATAAAGTTAATCCGGCATTGATGAATGGCAATATTGCGAATGGGTATGTTGACTATCAACACCCAACGGCGGCATTGGCCTTTATCCAGGCGGTCTTTCAACAGCAAGCAGCGTTACGAGCGTTGACGACTACGGCGGTACCTGCCTATTTACAGACAACTTTTCAGGTACAACCGTATCCTGAAGCAACGGCAGTGCAGCAACAAATTGACCGAGAAATTTTGGATAATGGTATTACGAGTGTGCCAACATTGATTATGTCAGGGCAAGCTTATTTTGATGAACAATTACGGCCGATTGAACAACTGCTTTAATCAGTATCAGCAGTGTGGTTAACGATGTAAAGGATAAAATCGTGATTGTTAATGGTGCATTGCTGTTGTATGCTTTAAAATATAAGCAGTTTAAAACCAAGTTAATGTAATTCGGTGTTTTTTGAAATTTGGAATGCTGTTATATCAAGGATTCTTTAGT # Right flank : TGGTGAAGGAGTCGATGCTGGTTCAGCTACCGGTGTTGTCGCAAGTGTTGATTCTGAATTATCATCTGCCATTTTTTTGCTTCCTTCAAAATTTAGGTATAAAAAATGAGCCTTTTAATGCCATGCTTAGGGCAATAAAAAACACGCTATCCAGCGTGCCACACAATTCGTTTAATTTGCGATGCTTTGATGCTAATCGTATCCCAATCCTCTGGTCCGCTACCGATATCCGCTTCAAATCCAGTTGTTGGGTCTTTAGGAACAAACACAATGGTGGCTTCACGACCATCAGTTAGCTCTACTATGTCGAACTCACAAATATCCCGTGAATCAACGCTCGCTTTTTCCATCATTGTGTTTATCCTCCTTTACATAAATTGAAGTTAATTACATTTCTTTAGAATCCTCGTCATCAATCCAGGCAGTTCGTATACGTTTAGTCTTACCATTGGGACTTTCAATCATGTATCCACTTGATAAAAGTCATGCCGTGGCCGTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //