Array 1 860-159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPZH01000183.1 Cronobacter malonaticus strain 1569 contig209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 859 29 96.6 33 .........G................... TAAATAACCGTCAAATCGCGTTTCACAGATTCG 797 29 100.0 32 ............................. GATCATTACCCACGAACAGGCGCTGGCGCAAA 736 29 100.0 32 ............................. CACCGGCCCAAATCTGGTTTGCGCCACCCTCT 675 29 100.0 32 ............................. TTCCGGCAGATGAAATCCTGGGGATCGTCAAA 614 29 100.0 32 ............................. GTGTTATGGATGGCGGCCAGGGCTTCACGCAG 553 29 100.0 32 ............................. CGATGTTTTTACCTACACCGCCCAAATACTGG 492 29 100.0 32 ............................. AATTTTCTTAACAATATCAGGATCGGCAGACG 431 29 93.1 32 .........G..........A........ CCCACTGTCGCGGCACCAAAACTAAAAGCGAG 370 29 96.6 32 .........G................... AACACGTTTTCAACGGCTGAAACCGAAGAAGA 309 29 96.6 32 .........G................... ATTTCGTCGAGCGTGTCGCTTACCGAATCAAT 248 29 96.6 32 .........G................... ATCGGCGACAACACCATCAACGCATGGCTGAG 187 29 96.6 0 .........G................... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.0 32 GTGTTCCCCACGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGAGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GGTATATCAATAACGTGGTTTATTGAATATGTGCGGGAGCATTATTTTATATGGCGATATATAAAAAACAATTCTGAGTTGGGGCATAAAGATAACGGCAATACTTAAAGAATTAAAGATTATTACATCGCTTCTATTTTTGCTGATTATATTTATATG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3967-4478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPZH01000198.1 Cronobacter malonaticus strain 1569 contig228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 3967 28 100.0 32 ............................ ACACGTACAACCCGTAATAGGGCGGATAAAAC 4027 28 100.0 35 ............................ TCCCCGCGCGAGCGGGGATAAACCGTGAGTTTGTT 4090 28 100.0 32 ............................ ACGAACGGTTTATACACGCGGCCTCGCGCTCA 4150 28 100.0 32 ............................ TTGTGCAACGCGACATCATGGCGGTATTTAAT 4210 28 100.0 32 ............................ AGCGGCATCCCTGCTGACTCTATCCCGAAAAA 4270 28 100.0 32 ............................ CTGCCGTAGCGGGGTTTTTATTGTCTGTTATT 4330 28 96.4 32 ...........................G CAGGAGTCCATTTATTACCTCTATAGTGTGCG 4390 28 100.0 32 ............................ CGCTTATCACACCAAGCGAGCTGGCCGCTCGC 4450 27 92.9 0 ........................-..T | T,G [4470,4473] ========== ====== ====== ====== ============================ =================================== ================== 9 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCGGGCCTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTCGCACGCGTACAGGTGAAAAGTAACCCCGAACGCCTGATGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGATTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCACTACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGCCTCGCTAACCTGTTGATTTTTATAGTGGGTTAGTGAGACGTTGAAAAAGGGTTTTTAAGAGGTAAGCAGTGGTTATAGTTTTATAAACAATGGGTTAGGTGATTTTGGCTTCT # Right flank : TCACAGTGTATTCTCTCTTCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAATTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGTTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGCTCAGGCCGGCAAAACCGCGTTCGCCGGTAAAAATGTCACGACCTGGGGGTATAACGGTTCGCTGCTGGGCCCGGCGCTTAAGCTGCGTCAGGGCAAACCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAGACCACGGTGCACTGGCATGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2755-3210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPZH01000208.1 Cronobacter malonaticus strain 1569 contig238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2755 29 100.0 32 ............................. TGTGTCAAAAATTTCTGAATCAATACCCGATA 2816 29 100.0 32 ............................. CTGCCCTGGCTCTGTATCTTCTTCGTAGTCAC 2877 29 100.0 32 ............................. GCATTTATAACCTCGCTGTATACCAGGATGTC 2938 29 100.0 32 ............................. TTGTCATCTGGAAAATAGACGACAACTATAAC 2999 29 100.0 32 ............................. GGATGAAACCGAAGACGCGCAAAAGCGGCTCG 3060 29 100.0 32 ............................. GGCTTACCGCCCTACAGCCAAAAACCTCTGTT 3121 29 96.6 32 ............T................ CGGATTGCATCAGATAACCGACTCCATGAATC 3182 29 93.1 0 ...........TT................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGACCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCAAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1041-415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPZH01000042.1 Cronobacter malonaticus strain 1569 contig051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1040 28 100.0 32 ............................ AGCCAGGCGACTGCCGGTAGCCTCTTCCAGCC 980 28 100.0 32 ............................ ATTGTGGTGGGCATTCTGGCCGCCGCTGCTGC 920 28 100.0 32 ............................ TTCACACCGGCGGCGCTCCGGCGCTGTTCGCG 860 28 100.0 32 ............................ AGCATCCAAGCGATCACATAATCGGCCTTGAA 800 28 100.0 32 ............................ AGACCGGCGCGCAGATGGCGGGCAAGGGTGCA 740 28 100.0 32 ............................ GTTGAACACACTGGAGCTGGCCGGGCTGGATA 680 28 100.0 32 ............................ ATTGAGCACGTCACCCTTAACGATGGTGCCGT 620 28 100.0 32 ............................ TGTTCAGTGCCGGGCACAGATACGTTGCAGCA 560 28 100.0 32 ............................ GATATTAATTTAATTGGGTGGAAAATCGCTGC 500 28 100.0 32 ............................ ACGTAAACGCACCACTCAGGCAGGTGCTGGAA 440 26 89.3 0 ....................--..A... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGTGCGGATGAATGCCGGTTTCAGGCGATGTTGTACGGGCATTAGCTACCCGAAATCAGCGGAAAAGTGCCTGCACAGAATGAGGGAAATGCGAGAGTGAACGCACCAGGGAGCAAACAACCAAACGGATAGCGCGATAAATGTGTGGGCATTGCGCCTGGACGTCTAACCCCTTTTTTATGCTCCGCCTCTAAATGGTTGATTTTTAATACGCGTACTGCGGGTGATGAAAAAAGGGTTTCAGGCGCAGAAAGGCAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATACTAAAGCCTGAGGGAGGGCTTTTATTACCGTTATATAAGTAGCAACAAAATAAAAAGGAAAGAATTATCCATATAACTTATGGTTTCTGTCGTATGGGCTAGTTCGATAATTTCATGGCGTACATCAGTCAGGTGCTAATTGCCCGGTATATCGGCTATCACATAAAAGTATTAAATCAAGCGCCAATATTCGCAGGCTTGTTACTGGTACAACATCCTGCCAGGCTAATCAGTAATGATGTTTGTTTGCGGACGGGCGTGAAAATGGTCTGTAAAGTGGCATTTCGTGTCACAGGAAAATAAAGCACGCGAAATGAAAGGGATATCACGGCATATTAAGCGGGTTAATTATAGGCTGGTGTTTTATTTATATTTCAATGGAATATAAATACAGAAATCATCTAACGGAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //