Array 1 48457-49385 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEBZ01000050.1 Vibrio cholerae strain OYP4G07 Vc_OYP4G07_Contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48457 28 100.0 32 ............................ TCCCACGCATCCCATAGTCAACTTACATCCAT 48517 28 100.0 32 ............................ GCGATAAATACGATCGTCGTGGTGACAATTAC 48577 28 100.0 32 ............................ GGTTGAAATGGCCGGAATAGGCGCGCTTTGCT 48637 28 100.0 32 ............................ TATGGTGGAGAAATTGATGAAGAGTGAGAAAG 48697 28 100.0 32 ............................ ATACAACGAATCGCGCGTTTTTTATAAGAGGA 48757 28 100.0 33 ............................ AACTTCGCCAAGCGCCTTGGTTAGTGATTCTTT 48818 28 100.0 32 ............................ GCACACTCCAAAGAGCCAAGCCTAGTCACCTT 48878 28 100.0 32 ............................ TTTTGTATTGATAAATCACTGGAGGTTGGGTC 48938 28 100.0 32 ............................ CCTACCAAGCAAAATACCAGCTCCAGCCTTTT 48998 28 100.0 32 ............................ AGATGGGGAAATGCATTCTAGGATTTCATCAA 49058 28 100.0 32 ............................ TGGTTGACGCTCTTTCTTGTATGCTCCTTGCA 49118 28 100.0 32 ............................ ATTCTAAGCGCTTAATCAAGAAAGGTGATGCA 49178 28 100.0 32 ............................ GTTCGCATTATCATTGCAATGCGTTTCTGATG 49238 28 100.0 32 ............................ TTCGCTCGATTATTCGTCATGGCCTTCAATGC 49298 28 100.0 32 ............................ TATATTGGATTGAAAAAAAGATTTGCGGTTAT 49358 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AACAGCTTGGCCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 57389-53696 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEBZ01000006.1 Vibrio cholerae strain OYP4G07 Vc_OYP4G07_Contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57388 28 100.0 32 ............................ TTACTGATTGCATCAAGTCCAACATAACCTTG 57328 28 100.0 33 ............................ CTATGGTGATTTTCATAGCGTTGACTCTCCGCG 57267 28 100.0 33 ............................ TTCAAGCCCCTCTACATCCCACAAGTGATTGTT 57206 28 100.0 32 ............................ TGAAGGTTTTGACCAGGCTATCAAGTGGATAA 57146 28 100.0 32 ............................ AGAAGCGCGAACTTAATTACATTCATGCTGCA 57086 28 100.0 32 ............................ TGTGTATTGCTGCATTAGGTTTTTGGTGCTCG 57026 28 100.0 32 ............................ TGACGGACATTTAGGCTTTTGAATCCAAGTAC 56966 28 100.0 32 ............................ ATCCATGTCTGCCGGCGCTTCAATCGCTCTGA 56906 28 100.0 33 ............................ CCGCAGCGTGAAGTACGGGGTATCATTTTACTT 56845 28 100.0 32 ............................ AACAGATACCATCACTGGTACACAGGCTCAAC 56785 28 100.0 32 ............................ TTGATGACGGTTCTGATGTATCCGTTGAATTC 56725 28 100.0 32 ............................ AAACTGGACGCTCGAAGATGCCGAGCTCACGC 56665 28 100.0 32 ............................ TTCGTGGTAGTTAACTTGGCTGTAATCTTGGT 56605 28 100.0 32 ............................ ACTGCCGCACGGCGTGATTCGATCGTTTGCTT 56545 28 100.0 32 ............................ TGCACCCGCTTGCATTGGGCTGATGGCAAGAG 56485 28 100.0 32 ............................ AATCGTGCAACGATTACGGTTCAATCGCTGCA 56425 28 100.0 32 ............................ AATGACCCGCGATTTCGCTTTGTTAAACTGAC 56365 28 100.0 32 ............................ AGTGTGGGGCTGCGTGCGGGTTATGTCGAATC 56305 28 100.0 32 ............................ ATACCCACGCGAGCGGCGGGTTTAAAGTCGCT 56245 28 100.0 32 ............................ ATTTCAACGGGAACCAATAGCATTACAATGAC 56185 28 100.0 32 ............................ AGTAAATGCTTTTTTAGCGGGTTTTCCTCCCA 56125 28 100.0 32 ............................ TATGATTTGGTGCAGAGAGCAGAGCGAGATGG 56065 28 100.0 32 ............................ GCTAGAAGAGTTTAAGTCTGAAACGGCAGGGC 56005 28 100.0 32 ............................ ATCAGCCTTGTCTTGAGCCTTAAGAGTTTCGG 55945 28 100.0 33 ............................ CTTACCAAGACCAGTTGAGTCAGTTGTAATTTT 55884 28 100.0 32 ............................ AATGTGTGATTGGTCGCCCTACTTGGCCTGAT 55824 28 100.0 32 ............................ GCTCCCTCCCGTTTTCACGTTTTCAAGGGTGA 55764 28 100.0 32 ............................ AATAAGCCACCGTGATCGCGTCAGATTAAAAG 55704 28 100.0 32 ............................ TTACTGAGCCTGAGATTTAGTTACAAATCATT 55644 28 100.0 32 ............................ CTTTGAAGAGGCGACAACAATTACTTTGCATC 55584 28 100.0 32 ............................ TGACAGGGAATATTCAAAACTAACTCCGTCAC 55524 28 100.0 32 ............................ TTGGGACGTGGCCGCAGCAGCGAGAACGCTGC 55464 28 100.0 32 ............................ CGAGCAAACACGGCGCTTTGGTACTGAATAAC 55404 28 96.4 32 ................A........... TGCAAGGAAGAAAAGCCTTTTGGCATGGAGAG 55344 28 100.0 32 ............................ TAGCTCGCGCCTTTGCTGCCGTCCGTTCCCAA 55284 28 100.0 32 ............................ ATTCCGGTTCGTAGTAACCATCCCACCCGCCG 55224 28 100.0 32 ............................ ATTGCTCGGTGACGTCGCAGAAGTGCGCGAAG 55164 28 100.0 32 ............................ GACAAATGACTCTATGCCGAAGTACACGGTTA 55104 28 100.0 32 ............................ TCTACGGAGAGCATTAAATAGAGTGAGATAAA 55044 28 100.0 32 ............................ ATTGCCGAGTAATGTTGTGATTGTTAAGGGTT 54984 28 100.0 32 ............................ GCAACACTCCCCGCAACCAGTGTCCACTTTGC 54924 28 100.0 33 ............................ ATATTAAACTATCTCTTTAGATAAATTATTAAT 54863 28 100.0 32 ............................ GCATTGATAAACAGCATTCAGATGGTCGACTG 54803 28 100.0 32 ............................ AGCCACCCACGCTCGCGCTGGAAAGCCTCGCC 54743 28 100.0 32 ............................ CGGTAGCGATGTTATTGCGCATTGGAACTTAC 54683 28 100.0 32 ............................ AGCTCGGCGGCGCATCGCTGAACTGGATCCGC 54623 28 100.0 32 ............................ TAAACCGAACTGAAAGGAAGGATTCGGGAAAG 54563 28 100.0 32 ............................ TTCCTGAGTCCATATCCTTGTAAGCGCCTTGC 54503 28 100.0 32 ............................ AGCACACGATATCCCTTTAATCCGAGCCATTG 54443 28 100.0 32 ............................ AAGCGGCAGCGCAGTTGCTACGCTAAGTATTG 54383 28 100.0 32 ............................ GTGTTCTCTGCTCCTCCGGTTGTTGAGCATGA 54323 28 100.0 32 ............................ ACTCGCGCAACCAGTCGGTTCCTCATCCTTAG 54263 28 100.0 32 ............................ ACAAAGCGCCAACGGGCGGCGTTCGCATCCCC 54203 28 100.0 32 ............................ AACCAGTCTGAGCAAGCATCTTGAATGGCCGC 54143 28 96.4 32 ...........T................ CGACGTGCAGCTTACCTCCAGCAATAGGAACC 54083 28 96.4 32 ...........T................ CAAGGCGGAGATTGAGCGGTTGCGTGAGCTTG 54023 28 96.4 32 ...........T................ CCCACCAGTCTCCAGAAAGTCACCTAACTTAT 53963 28 96.4 32 ...........T................ AACAGTTCGAAATTCAGCTTGGTGACAACCTC 53903 28 96.4 32 ...........T................ GATCTGCGTTTATTGATCTCAAGTATTAGTTT 53843 28 96.4 32 ...........T................ TTCATCGGTAATCAAGGACACTTTGGGATCAA 53783 28 96.4 32 ...........T................ ATGCCTTTGGATCGTCGTGAAACTTGCGGTGT 53723 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 62 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATAAACATCATCCCA # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //