Array 1 11015-10621 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBD010000032.1 Campylobacter canadensis strain L280 L280_contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 11014 36 100.0 36 .................................... CCATACCCCAATAATGACTCGTTGTGGTGATGTTCT 10942 36 100.0 36 .................................... ATCAGAAGGCTTCATTTCATATCTATTATAACTTTT 10870 36 100.0 36 .................................... TTTTTGTAGATGGTATCTACTCATAAATGCTTTTTT 10798 36 97.2 35 ............T....................... ATAAGCCTTGTTTTGCTTTAGCTATTTTTTTATTC 10727 36 97.2 35 ............T....................... TGCAGTCTGCCATTGGCATTCCGCACTCGTCTAAT 10656 36 94.4 0 ............T......................A | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.1 36 GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC # Left flank : CGACAACTTAATATTTTTTAGCAGCTGATCTAC # Right flank : CTTAGAATACTTTGGGATAAGATAAAAGATATTAAAAATCCTATGTCGCACTGTACTACTGAAAATATCAAATTTGATGTAAATAAAGAACTTCAAAGTTGCTTAGATGTGTATCAAAATTATATTATAAAAAATGATGTTTTAGCTAAGTAGTTTTAAGGCTTTTGCCCTAGCCTACTTAACTTTTTGTATTAAATAGTTATTATAAACTATATTATCTTTAAAACTCCCTAAATTTTATATGCTTAAAAATGCTTTGTTTTACACCGTTTTCATCTTTTAAAACCTCTCTTTTTGTGGTGGCATAAACGGGTTTTAATGATTTTGCTTTAGCATAATTTATAAGCTTAAAGCATAATCCAAAATCACCGCTAATAAGCAAAAAATCACCTTTTTTAGTATTTTTATCAATGTATTCATAAAAATCCTTTGCGTATTCATCTAAGCTATCAAGGCTGGGCGGAACATTTGAAAACCTAGTTTGTAAATCCTTTGGCAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 104924-103582 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBD010000005.1 Campylobacter canadensis strain L280 L280_contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 104923 37 100.0 35 ..................................... ATTGGCATCGTTGGCACCGATTCAGCACTCGAAAC 104851 37 100.0 35 ..................................... TCTTCTAAAATTGAAGTTTCAAGTAGCTTCATCTC 104779 37 100.0 35 ..................................... CAAAATTTGCGATATAATGACGATAATGAACTGAA 104707 37 100.0 35 ..................................... CGATAAACCGAATTGTCTGCATCTTTAAATGCTAG 104635 37 100.0 35 ..................................... TATGAAGTTGGAAAAAGATGTTTAATTCGTACTAC 104563 37 100.0 36 ..................................... ATCAACGTTAATTAAATATTCGTTATTAACATATGA 104490 37 100.0 35 ..................................... AATTCTTCATTAGAGAAATCAGCATTTAAAGTATT 104418 37 100.0 35 ..................................... CGAGCATTCTGACTGTCTTCAAAACCCCAATCTTT 104346 37 100.0 35 ..................................... CAGCAAATCGTGGCTGGTGGTGTGCTAGAGCTTGA 104274 37 100.0 36 ..................................... GTTTTCTTTTAAAAATTTTGGTAAGCTTTTTTTGTA 104201 37 100.0 37 ..................................... TAAGTGCTTACATAACTTTTTGGAAAAATATTTTTAA 104127 37 100.0 36 ..................................... CATCCTTTCTTCAAGTGGTTTATCTATTACCACAAC 104054 37 100.0 36 ..................................... CAAGATTTAATCTTGTTAATTTTTGCAGCGACTTTA 103981 37 100.0 35 ..................................... AAAGCTATTGGTGGTGGCATTCCTAATCCTATAAA 103909 37 100.0 36 ..................................... AGCTATTAATAAACAAATTAATATTAAAAAAGATAT 103836 37 100.0 36 ..................................... TTCTTTACTTCTAGTTTCGCCAACAATAATTCTGTC 103763 37 100.0 36 ..................................... CAATATCAAAGAAGACAAGGCAATGTTTGTTTGTGT 103690 37 100.0 35 ..................................... TAGCCAATTATAGAGACTACTTCTTTAGCTGTTTG 103618 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 19 37 100.0 36 GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Left flank : AACACACTGCTTAATCCGTTCTTTAATGTAAAAATACTACTTGCTAAAGAATATAGCTTTTTGCCAAACTAACAATTAAGACTTACAATAATCAATATATTTTAGATAAATAATTTGGTTAGAGAAATTAAAGAAGTGCAGTAAGCAAAAGATAAATAAGAAGAAATTG # Right flank : AGCTAGATAAACTTGTCTAGCTTGTAAGGATTTGAGCTAACTTAAAGTTTGCTTATTTTTCCACTTTGAAAATTTCGGCAAAAAACAGCCGTTTTGTGGAAAAATAAGAAAAATTTAAGCTTATGGTTAAGAATTTTAGCCTAATATATCAACTCAAACCTAATTCTAGCAAAATATTTAAGAGTTTGAAATCACCACAAGGTTGGTAAAATATCGGGCAACTGGCTTAGCCACCCCGATAAATCTTATTAGTTAATCTTTGCTAAATAAAATTCCATTAAAACATAAATTTAGGAGAAATCATGAAAACTCACATTAGTATAGATATGGGAGCGAAAAATAATGGGGTGTTTTTAGCTCATACAAAAGATGGCAAGATTATAGATAAAACTGCTACGAATTATATCTTTGAACCATCTTCTATAAATTTTTTAAAAAAAGATAGAACCAAGAAAAGACATCAAAGAAGAGGTTTTAAAAGAACAAGACTAGCTAGAAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 37-841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBD010000007.1 Campylobacter canadensis strain L280 L280_contig00007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 37 36 100.0 37 .................................... TATGGTGTATCGTTTACAACGATACATACTCCATAAG 110 36 100.0 35 .................................... CTCTTGTTTAAGACAACAAAAGCAAATGAACAAAT 181 36 100.0 33 .................................... TCATAACCTAAACTATTAAAATAAAAATCAGAG 250 36 100.0 33 .................................... AAAAAATATTTGGAATTCATTTTTTACATTTAC 319 36 100.0 35 .................................... ACATTGTTCGCTTCGTCGTTCTCCAGCCTTGAAAA 390 36 100.0 34 .................................... TGAAATCTTTTTTAAGACCGATATAGTGACTTGT 460 36 100.0 32 .................................... TTATCTAACACTTTGCTGAAAAGTTCTTGTAA 528 36 100.0 33 .................................... AACATTATTTCTTTTTTTATGAAATCTTTTTTT 597 36 100.0 31 .................................... ATTTATATTTAAATCAGCTTTGAAAATATAA 664 36 100.0 33 .................................... GGCATTCGCCACCACAGAAATATATTTGTTTCC 733 36 100.0 37 .................................... TTTGATAAACCTATACCTTTTATCACTTTGTCTACTT 806 36 91.7 0 ..C......T...A...................... | ========== ====== ====== ====== ==================================== ===================================== ================== 12 36 99.3 34 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : CTAAATAACTTTCTAATAATTGCAATTCACTAATTAG # Right flank : CATTCGCCAAATTATTTTCAAAACTTTCATCAGCTTTTGTGCAAGAAAATTACTATTTATTAGATTAGTAAAAAGAAGTAGCAAAAATGATTAAGCTATCTAAATACGAAAACGCAAGTAAAAATGAGATTGCAAAAGTAATTGATAAATATTTTGCTAAACTTAAAGAATAAAAAAATCAAAAAAACACAAAAAGCTATAAAGCAATTACAAAAGTTTTTAATCAAAGCTTGAAAGCTAACAAAACTAAAAATTATAAGTGGCTAAAAGAATATTAAAAGTAATGAATTTATAGAAGCACTAAAAGAAGCTGAAGAATTAAAATAGCTTATTTGCGTGAAGAAGTGCAGTATTTAGAAGTTAAAGAATTTGTTAAGGAAAGTATGAAATGATAAAGCTAATTATTAAAGAACAATAGCATATAAAATAGCTTTAAAAAAATTAGGTAAATATAATAAAAAACCAGCATACAAAATCATTCATTGTTTAGCTAATGCTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //