Array 1 64393-63508 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBQ01000023.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN004126 NODE_23_length_73096_cov_35.9379, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64392 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 64330 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 64269 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 64208 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 64147 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 64086 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 64025 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 63964 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 63903 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 63842 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 63781 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 63720 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 63659 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 63598 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 63537 29 96.6 0 ............T................ | A [63510] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8628-7380 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBQ01000014.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN004126 NODE_14_length_123319_cov_36.9437, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8627 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 8566 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 8505 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 8444 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 8383 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 8322 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 8261 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 8200 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 8139 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 8078 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 8017 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 7956 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 7895 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 7834 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 7773 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 7712 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 7651 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 7590 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 7529 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 7468 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 7407 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //