Array 1 117431-122508 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT594783.1 Clostridium mediterraneense strain Marseille-P2434T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================================================== ================== 117431 30 100.0 36 .............................. TTAACTTTTTTATTTTTTTTACAAGTTCTTTTTGTC 117497 30 100.0 35 .............................. CATTTAGAAAGACCTGCTGCAATATAACTAGCTGC 117562 30 100.0 35 .............................. ACTATAGAAAACAATGTTATAGAAGCTAAAATTAA 117627 30 100.0 35 .............................. ATTGATGGTTCTCTTAATATAAGAAAGAATAAACA 117692 30 100.0 36 .............................. TTAAGTAACATTTTTCTTAATTCTGATGTTTTTAGA 117758 30 100.0 36 .............................. ATAATATTATAAAGTAAATTAATAGGGGTGATTGAA 117824 30 100.0 35 .............................. ACACTTTTTTAAAAAATAATTTGTTTTTAATTTAA 117889 30 100.0 36 .............................. GCGAACCAAACAGATCCTCTTATTAATTTTTCTTTA 117955 30 100.0 37 .............................. TTATATTTATGTTTTACATACCTACTTCTCTTTATAT 118022 30 100.0 36 .............................. AACTCTTTGCTCTTTCTTCTATTAACTTTAATCATA 118088 30 100.0 33 .............................. TTACCAGTTTTAAAGTTTTCATAATTTTGCTTT 118151 30 100.0 35 .............................. ATATTTAAAATAATAGAAGAGGTATTAAGTAATAC 118216 30 100.0 36 .............................. CTATAATAAATAAATTGAAAAGTTAGGAGTATCTAT 118282 30 100.0 36 .............................. CCTCCTAATATTATTATAAACTCAAGTCCAAGGACT 118348 30 100.0 36 .............................. GGTTATGATGCAATTCTTACAGGAGTACAAGGAGAA 118414 30 100.0 37 .............................. TTAGGATTCCAAGTTCCAACTTGTCCAAAAATACTTC 118481 30 100.0 36 .............................. CCACTAAATCTTTGCCATTGATTTGGTATTGCATTA 118547 30 100.0 35 .............................. GATTTATTTGAACTTAATAATGATAATAAACCAGA 118612 30 100.0 36 .............................. ACGACTTAAAATACCTTTTTTCTATGCTAAGACAAC 118678 30 100.0 35 .............................. TGCATTAGTAGGACTATATGTAAAAAAGACAAGTC 118743 30 100.0 36 .............................. CTTATATCACAAGGTAATGATTTTAATTTTAATTGG 118809 30 100.0 34 .............................. CTATTAAAATTTGTTATTAACACAACTATACCCC 118873 30 100.0 36 .............................. GAATCAATTATAGTAATAATATCCCCTAACTCATAT 118939 30 100.0 35 .............................. ATTGCATTATACTTTTTATTTCCATCAATTTCAAA 119004 30 100.0 36 .............................. AAAAATTGTAAATAAAAAAGATTTTGTAAGATGTCT 119070 30 100.0 35 .............................. CCTGAAATGGGTAAATGTATTGAAATAAGTGATAG 119135 30 100.0 36 .............................. CATTATAGTTCAAGGTGAGGAAGAAACATATAAAAT 119201 30 100.0 35 .............................. TAATCAGCTATGTCAAGGACTTCTTCAAGCTTCTG 119266 30 100.0 36 .............................. CAAAGAACAAGGTGGGACAGATGAAAATGATTTAAT 119332 30 100.0 36 .............................. AAAATTATATCTGTTACTACTCTTCCAGTTTTCTTT 119398 30 100.0 36 .............................. TTAGGAACTAAAGAAGTTAAATAACTTGATTCTTCT 119464 30 100.0 36 .............................. TTTGTATTGAAAAATGAATATAATCTTTGAATTATT 119530 30 100.0 35 .............................. GCAAATGCATAGAATGAACCAAAATCTTTAAAGTC 119595 30 100.0 35 .............................. AATATCCATATTAAAGGAACTAAAATAATATCTAA 119660 30 100.0 34 .............................. TCTATTTTAAATCTTCTTCTTTCTACTCCATCTT 119724 30 100.0 35 .............................. AATCGTGCTTCTTTTAGTTTTTTTATTAGCTGTTC 119789 30 100.0 36 .............................. ATGTCTCCAACAGCACAGATGATGGTACATAATGTA 119855 30 100.0 35 .............................. GGAATTAATTCTTGATAAAGAAGAAAATCCCGAGG 119920 30 100.0 35 .............................. AGAAGTGAGTAACGAATAAATTCTAAAGTACCTTT 119985 30 100.0 36 .............................. TGGACAAGTTGGATTTTATAAAGATAAAAAACTTGG 120051 30 100.0 36 .............................. CCTCCTAATATTATTATAAACTCAAGTCCAAGGACT 120117 30 100.0 36 .............................. TTTCCAACATATAGGACTGGCACTTCAATTATAAAT 120183 30 100.0 35 .............................. AATAATATATTAGGAGTAGTAAAGGTATAAGCAGG 120248 30 100.0 35 .............................. TTATTTCTCCTAGCAGAATATAAAAGCCCAATAGG 120313 30 100.0 37 .............................. ATATTTTTTATGCACATAGCCCCATAAAGCTATGTGT 120380 30 100.0 36 .............................. ACATTTTTTGTTTTTAAAATTGTATCGTAATATAAA 120446 30 100.0 36 .............................. TCTCTTAATAAATTCTTATGATATCTTATAAAATTT 120512 30 100.0 36 .............................. TGGTAATAACAATAATTTATGCTACGAGATAGATGC 120578 30 100.0 35 .............................. TCTGTATATAATATAGTTGTTCCATCTCTAAAACC 120643 30 100.0 36 .............................. GCTATAGTTATCCTTCCTTGCTTTAAGCACTCTTGA 120709 30 100.0 35 .............................. TACTCCTATGGATTGGGATGATGATGGTGATTGCG 120774 30 100.0 36 .............................. TTTTATACCAATAGTTTAATCTACCAGTTAATATAT 120840 30 100.0 36 .............................. TTTAAAAAATGGTTATATAAGCAGCGATAAACTGGA 120906 30 100.0 36 .............................. TCTACTTTAATTTCTTTTGGAGATAGATCTGTATTA 120972 30 100.0 36 .............................. TATAGTTTGATTTTAGCAAGAACAGGAAAGAGTTTA 121038 30 100.0 36 .............................. TAGGCTAAAATAGGGTCTATCTTGGTGAATTCTTTC 121104 30 100.0 35 .............................. TTTTCAAAGGAATGCCTTCTGTCTAATTTTGTAAT 121169 30 100.0 37 .............................. CCTTTTAAATACATATTGAATGACCTCCATTTACTTT 121236 30 100.0 35 .............................. CAAAAGTCAGTTTCTAAACACTTCTTATTATCTTT 121301 30 100.0 35 .............................. AGTCAAGTCTTTATGCGTGTTGATAAGGTTTTGAG 121366 30 100.0 36 .............................. GAGCTTTGCAAAAGGATATGGAGTGAGAATGTTAGG 121432 30 100.0 37 .............................. AAGTATTTATTTCTGTTTATCTACTGGACTTACTAGA 121499 30 100.0 36 .............................. AATAGAGAGTTACAAGTATAGAATAGCCGATTTAAA 121565 30 100.0 36 .............................. ATTAGAAGAATTATATGTAATAATTGAGAAAAGAGA 121631 30 100.0 37 .............................. CAGGCTTTCAACGAATTTTTAAAACTTAGATATAAAG 121698 30 100.0 36 .............................. AATTTTTAAGGTGGAGGAATAAAAATGAAAAATAAA 121764 30 100.0 35 .............................. AAAGATATATTCCAATCGCTTGTTTCAGCTGGAGT 121829 30 100.0 35 .............................. GGATTAAATCCTATAGAGGCTAATATTGAATTTGA 121894 30 100.0 36 .............................. AATTTTAAATACATTCTTTTTCTATCCATTTTTATT 121960 30 100.0 36 .............................. CTAAACTATAACAAAAATTAGCTTGTGTTTTACCGT 122026 30 100.0 36 .............................. ATGATTATATATCTAGGTTTAATAGTATAATAAAAT 122092 30 100.0 35 .............................. TTTACCTCTTCGTCTGTTAAAATTATTTCCCTGTG 122157 30 100.0 36 .............................. TCAACAATATTTAAATTAGTTTTATTAGGCAGCATA 122223 30 100.0 35 .............................. TCTTCTACAAGCTTATCTTGTTCATCCCACCTTTT 122288 30 90.0 107 .................A..........TA TTGATTAAAAATTTTTATAAGAATATAAGCTATCTTTTAAAATTAACTTAAATTAGAATATAAGATTTTAATAAGTATAAATATATTATTATATGTTAAGACTTAAG 122425 30 76.7 24 AA....A........ATA...........A ATGGAATCAAAGTTTATTGTTACA Deletion [122479] 122479 30 76.7 0 ......AG.......TTA........G..A | ========== ====== ====== ====== ============================== =========================================================================================================== ================== 77 30 99.3 36 GTTAATCATTAATATGAGATATTTTATAAG # Left flank : ACTTATAACACAAGAGCTTAAAAAAGATTTATTAATTAAATGTAGATATAAATATAAAGAAAGTGGAGAGGTTGTCGACTCTGCTGAGCTTATAGAAGAATATATAAAAATAAAAGAAGATAAAAAAATATCATATGCAGAAAAACAAATAAAATTAAGTAAATTTAGAAAAGCTTTTGATCCATTTATATATTCAATAAATTTATATGATATTGATAAAGTAGATGTGATAGATAGAATATCTAATTGGAACATAGTTGAAAATGCTTATGGCTATTTTGATTTAGATGAAAATGGGTGTGTAACAGAGGATAGTGAATTAAATTTAGAAGCACTTTTTTCAAATAGTGATATATTTTAAATTTACCAGGTGATTTCTAAAAAGTATTGAAAATACTAGGTTCTTTAAAATGATGTATCGCTGGTAAAAAATTTGAGAAGTTAAGTAAATAAGCTGTTTAGAGTATATATTAATTTTCACAGATGGCTATTTTACTATT # Right flank : ATTATATTTATATAATTTCTTTTTTTATGTATAAAAATAATTAACTTAGTTAAAATTTAGATATATGTATATTTAGGAGGGATTATGGAGGTAAATGGTACATTAATTAATTATTTTTTTCATTGTAAGAAACAATGTTGGTTACATGGAAATAGAGTTAATTTAGAAAGTAATAGTGAAGATGTTAAGATAGGTAAAGCTTTACATGAAGTTAATAAGGAAAAATATAAAAATACTGAATTAAAGATTGATAATATAAGAGTAGATAAGCTTACTAGTAAATATTTAGTTGAAGTAAAAAAATCTGATTCTGATTATGACGCTGTTAAGTGGCAAGTTTTATTTTATCTTAAAAAATTAAGGGAAAAAGGAATTGAAAGAAAAGGGAAAATAGAATTTATAGAAAAAAACAAAAAGGACAAAAAAGTTTATTATGAAGAATTAACTGAGTTAGAAAATAAAAAACTTGAGGAGATAATAGAGAATATAAAGTATCTATT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCATTAATATGAGATATTTTATAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 41459-45631 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT594784.1 Clostridium mediterraneense strain Marseille-P2434T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 41459 30 100.0 36 .............................. TAGCATTAGAATTTTTCTTAGTAGCATCTGCTGCAC 41525 30 100.0 37 .............................. TCACCAGCTCTGAATAAAGAAATATTATTTGTTGTAC 41592 30 100.0 36 .............................. GCACTTCTTAAGACATCTCCAGTATCATTATCTGGT 41658 30 100.0 37 .............................. TTACCAACCTTATTAGGATTAAATTCTAAAGTAGCAA 41725 30 100.0 37 .............................. TATAGCCTTGTAGCATAAACTTTACGTAAACTGTGAC 41792 30 100.0 34 .............................. TTTGTAAACTCCATAAAATCACCCCACTTTTTGA 41856 30 100.0 36 .............................. AGATGCTCATTTTCCATTTATTAATTTTACAATCGA 41922 30 100.0 37 .............................. TATGCTTAGCACAAAACAAAGCTCCTTGCAAAGATTT 41989 30 100.0 36 .............................. AATAAAGGGCTTTTAATTAATGCTGATATAAATGGA 42055 30 100.0 35 .............................. AGTTAAATATAATTATTTTTTAAAAGATTTAGCTA 42120 30 100.0 34 .............................. CTTCTCTATTAATCTTTTCATTGAGGCTATCTAC 42184 30 100.0 35 .............................. AATAGAAATTCTATTCAAGTATATTTTCAAAATGG 42249 30 100.0 36 .............................. AAATAAAGCTACACAAGCTCTAAATGACGCTAAAAG 42315 30 100.0 38 .............................. TTAAAATAATTAATTAATTCTTCTTCAATCCCCATATT 42383 30 100.0 36 .............................. TCTTTCCAGTAAAGAGTTTTTACCTTAGTAGCATAT 42449 30 100.0 35 .............................. CCTAATGGATTTGGTGCAGGATTTGGAAATAATAA 42514 30 100.0 37 .............................. GTTTTTACTGGATTTACAATTCCAAGTAATATAAGTT 42581 30 100.0 35 .............................. TTTATTATTAGGATTTAAAGAAGCTATTAAAGATA 42646 30 100.0 36 .............................. ATCTATCATTGATATTAAGTTTGAGAATGATTTAGA 42712 30 100.0 34 .............................. TTATTTTCTTAGCTTTTTTAATAGCATAACAACC 42776 30 100.0 36 .............................. GATATGACTAAAGTACTTATAGATGATTATGTTAAA 42842 30 100.0 34 .............................. TGTGTAGCCTTTTCGGCAGGTCTGAATATGTCAG 42906 30 100.0 33 .............................. TTATCAGTTATTACATCTTTTATTCTTACAGAA 42969 30 100.0 35 .............................. AACCTGTAAAATTAGTAAAAATAATAATGAAATAT 43034 30 100.0 36 .............................. AATCCATACTTTTTACCAATTCCTCCACTATTCCAA 43100 30 100.0 36 .............................. TAATAATGAGACTCGCTTTGTAATGCCCATGCTAAG 43166 30 100.0 36 .............................. GAATTTTTCAATGAGGATTTAGAAGAAGAAAGTGGA 43232 30 100.0 36 .............................. AATCTACGACAAACAATAGAACGAGATAAAAACATA 43298 30 100.0 35 .............................. TTGTTTTATTGTATTTTCTTAGCTATTTTATAAGA 43363 30 100.0 36 .............................. TTAAGATTAATAGACGTAAATTTTGGCATAACTTTA 43429 30 100.0 35 .............................. TATTAAAATCTTTAACCATTACAGTTGCTTTAAAT 43494 30 100.0 36 .............................. TGGAAAAAGGGATCTGGGATTTAGATTACGATAAGG 43560 30 100.0 36 .............................. TTGGACTGCTTTTGCTAATGGTGTTGGAGTTTATGA 43626 30 100.0 37 .............................. GCAACACTATAATGCCTATACATTGTAAAAAACTCAA 43693 30 100.0 36 .............................. TAATAGAAGATAAAACTATAAATAAAGCAAGTCCAC 43759 30 100.0 36 .............................. AAAAAGGGGTGCTATACATTTCCATTGCATATTTTT 43825 30 100.0 36 .............................. TTTATACAGTTCTTTGACGAGTTTATGACCATGAAG 43891 30 100.0 35 .............................. GTAGGAGAGTATGGTGGTTCTAGGTATATGGATTT 43956 30 100.0 34 .............................. TATGATAGTTCTGTGACTTCTAGTGTTTGACCGT 44020 30 100.0 36 .............................. TATTAATGCCCCCTTTCCTCTAGAACCTCTTTATAA 44086 30 100.0 36 .............................. ATGAAAACAATAATGAAAAAGGTTATGGATGGAGAA 44152 30 100.0 36 .............................. ATAGTTTTGGAAATTCAACAGCTAATGGAGTTGAAG 44218 30 100.0 36 .............................. AGAACTCGAAGAACTATTCTTAACAAGTCTTAATAA 44284 30 100.0 37 .............................. TTTGATAAGTACCATTAGGATTTAATTTAGTTTTTAA 44351 30 100.0 37 .............................. TTGCTTTTTCAGGATTGTCTATTTCAGAAATATTATA 44418 30 100.0 36 .............................. TTGATAATCCGTACTTATCCATTAGCTTTGCTGCTT 44484 30 100.0 37 .............................. ATTATAAGAGCAGTTCCAGTCCAGTTATTTTCATCTA 44551 30 100.0 36 .............................. AAAAAATGAGGAGCTTCTTAAACAAATAAAAGAAAA 44617 30 100.0 36 .............................. ATTAATGATGATATGATTATTTCCAAAGTGCAGCTA 44683 30 100.0 34 .............................. TATCCAGTTCGTTCTTTTATGATCACCTTTTCTT 44747 30 100.0 36 .............................. TAGAGAAGATAAAGATGATAACTATGATTATGGTAT 44813 30 100.0 36 .............................. CCTTTAGTTATTAGTTATATAATAGAAAGGCAATTA 44879 30 100.0 35 .............................. AGATTTTTAAAATAACTTATATATTCAGCTTCTTT 44944 30 100.0 36 .............................. ATATTCTACTGGTATTTTTGTAGCTGCTATAATTCT 45010 30 100.0 37 .............................. TCAGCTAAGGCATCTTCTTTAACTCCTGTATGATCTA 45077 30 100.0 35 .............................. ACATGTGCTAGTCTTAATATTGATGATCCCCTAGA 45142 30 100.0 36 .............................. GGGCTTAGAGCAACAAATTACAGGGCTTATACCAGG 45208 30 100.0 36 .............................. GAAATACAGGAAGCTGAAAATTATAATAATGAAAAT 45274 30 100.0 34 .............................. AGACTAGTTTCAGTTTCTTCAAGTGCTTCTGCTA 45338 30 100.0 36 .............................. TTATGAAAGTAAGGTTGTAGTAAAAAACTTAAATAG 45404 30 100.0 37 .............................. TTAAGTATCTGCCAAGCTCTTTGACGTGATATAGGTT 45471 30 100.0 36 .............................. ACATATGAATAATTATTATTATCATATTGGTTTATA 45537 30 100.0 35 .............................. TAAATTCCTTCTTCATCTAATTCTCTAAAATCTAC 45602 30 93.3 0 .................A...........T | ========== ====== ====== ====== ============================== ====================================== ================== 64 30 99.9 36 ATTAGAATTTTATATAAGTATTATTAAAAG # Left flank : ATGATGATGAAAAGAATGGAATAACTCCTAATTTGACAGTTTCAACTATGGGTGCAAGAGAATATTTAGATTTAAAGGAAGTTATATTTTATATTGATAATTTAATTCCCAATATAGAAATGTATTTAAAAAATATAGACTGGATAGGAAATGCTGAAAGTATAGTTTATTTAGACAAAATAGAAGAGGTTAATTTATTAGAAAATATACTAAAAAAATGGGATAAAAAAAATTGTGTTGAAATTTTTGAACAACATGATTGGAATAGCAAAACAAGTTTTGATTCTATATATACATATAGCAACAAATATAAACATCATCATGATACTTTTTACTGTGAAATAAGTAATATCCAATTATAATTTTACCAGGCAATCTTACCAAAGCTAGTTATAATCACAAATCTAAAAAATATAAATCGCTGGTAAAAAACAAATAGAATGGCTCTATTAGTTAGTTTATAAAGTATTTTATATTTTTAAAATGGCTATTTTACTATT # Right flank : TTTTTATATTAAATAATCATAAAGGAGTAAAAATGAAAGCTAAAGAATTCTTTGAAAAAATAGGTTTTAATGAACTAAGCGAAATACAAGAAAAAGTATTAAATAGTAATAAAAATATCTTAATCCTTGGGAGTTGTGGAAGTGGTAAAACAGAAGCTATGCTTTCAAAACTTATTGAATGGGATGACAAAGGAATATTAATAGAACCAATGAAAACTCTAGCTTCAAGTTTAAAGGATAGGCTTAATTATTATAGTGATATATTACATTTAGATAGCTGGACTATTCAACATAGTTCAGATTCAGAGGATAAATTTTTATCTAATAAATATTGCGTTACAACAATAGATCAAATATTAAGTGGATATTTAGCGATAGGTATGCAATCTTTTATACGTGGAAAAAATGTTTTAAGAAGTAATTTAGTTTTTGATGAAGTTCAATTATTTGATCCAGATAAAATGCTTTTAACAACTATAAATATGCTTAAAGATATAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTTATATAAGTATTATTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //