Array 1 116126-117983 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYFQ010000006.1 Salmonella enterica subsp. enterica serovar Jerusalem strain 5079-1 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116126 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 116187 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 116248 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 116309 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 116370 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 116431 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 116492 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 116553 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 116614 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 116675 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 116736 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 116797 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 116858 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 116919 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 116980 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 117041 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 117102 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 117163 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 117224 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 117285 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 117346 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 117407 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 117468 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 117529 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 117590 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 117651 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 117712 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 117773 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 117834 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 117895 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 117956 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134655-136758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYFQ010000006.1 Salmonella enterica subsp. enterica serovar Jerusalem strain 5079-1 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134655 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 134716 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 134777 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 134838 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 134899 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 134960 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 135021 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 135082 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 135143 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 135204 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 135265 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 135326 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 135387 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 135448 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 135509 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 135570 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 135631 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 135692 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 135753 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 135814 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 135875 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 135936 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 135997 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 136058 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 136119 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 136180 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 136241 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 136302 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 136363 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 136424 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 136485 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 136546 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 136607 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 136668 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 136729 29 100.0 0 ............................. | A [136756] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //