Array 1 911152-912319 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIE01000003.1 Vibrio cincinnatiensis strain NCTC12012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 911152 28 100.0 32 ............................ ATAATCATTGTTTGCAAAGTAGTCACGTAGAG 911212 28 100.0 32 ............................ TAGTGAAAATTTAAGAACAGGCAAATCACCAG 911272 28 100.0 32 ............................ TTAGACGGTCAATATATCTATTTAAAATCGGC 911332 28 100.0 32 ............................ TTAACTAAGTAACCATCGGGGGTTATATGAAA 911392 28 100.0 32 ............................ GCTCACGCTCTTTCGGTGGTCAACGTATTTCC 911452 28 100.0 32 ............................ TTCGAAGATAAAGATGTAGAGCAGCATCCCCC 911512 28 100.0 32 ............................ AACTCGCCACTGAGGGGTTATTGTCTGGTTTG 911572 28 100.0 32 ............................ TCTAACACGTAGTAGGCTTGGTCTGAGTTGAG 911632 28 100.0 32 ............................ AGTAAGCGCCTTGAGTAAAATAGAAGAATTTT 911692 28 100.0 32 ............................ CCGAAGGAGCCACCAACCGCGAAAAAGCTACG 911752 28 100.0 32 ............................ ATGAAGAGGTGCTGATCACCGATTTCGTCCCT 911812 28 100.0 32 ............................ ATTGTAGATGTTTGGGGGCGTCCGATTGAGTC 911872 28 100.0 32 ............................ TATGCGCGAGGGCGCTTTACCCCTGGAACAAT 911932 28 100.0 32 ............................ CTGTAGAACAGGCTGCACGCAGCACATATTAC 911992 28 100.0 32 ............................ TCAAGCAACACTACGAATAACAATACATCGGG 912052 28 100.0 32 ............................ TACTGAGTACAAATTGCCATTTCCTTGGACAG 912112 28 100.0 32 ............................ GATAAGCACTGGGGCGGCCTCCTTAACTAAGT 912172 28 100.0 32 ............................ TTAAAGGGGTATTCGAAACAGTGTGAGTATCG 912232 28 100.0 32 ............................ TTGCGGCCCACGCGCCCCTTGATGAATGACAG 912292 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GATGTAAATTACGTAAGCTTTGTGCGCAAGCAGGTGAAATCGCCCGAGCGAATAGAGCGGGATATGCAGCAAAAAGCCGCGCTATGGGCCGCAAAATCCGGTAAACCGCTGGTGGAATGCCTAGCCGATTTGCAACAAAGCAAGCCGACAGCCTTATGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACGAAGCAGCGCTCCCCTGAAAAAAGCAGTAAGTTCCCGCTGTTTATTCAGATGCAGCAACAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAGTGGGCAATCAGCATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAACCAATAAATACAATGAGTTACAACTGGTGGTTTTTTATAAGGTAAAAATGCAATTTTTATCCTAACTGACTGTTGTAACTTGTTTTTATTGATTTATTCTATA # Right flank : AATCGCCAGCACGTTGATGGCGTGGACGATATCGTTCACTGCCGTATATTGTGCACCTAAACTTCTAAGCTAGTATCAGTCAGGATAAGACATTAAGAGAATGCCACCCCTTTATATCGCTAGATTTAGAGACAAAAAAAGACGTCCTGGGACGTCTTTTTTCTGGAATTTGGCTCCCCCTGCGGGACTCGAACCTGCGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTAAGGGGGAATGGGTTTGTGCTGCGGATGGTAGCTACTCTGTTCTCATGTGTCAACTTTTGGCATTAAAAAAAAGAGAATTTTTTTGCGTAGAAGGCTTTACTTTTCTGTATCCCTTACCCCATTTGACCTCGATTCAGTTATCCACCAAATTTGTGGATAAGTGTGTTGATGAATGTTGAGTAATTATTTTATTGATGTTTTTATCTTAGACTCTTTAGAGTGAAATCAGTTGATTTTCTCTATAACTTTATGTTTTTGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 447407-448095 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIE01000002.1 Vibrio cincinnatiensis strain NCTC12012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 447407 28 100.0 33 ............................ ATTTCAACAAATGGATTTGATTTTAGCCCGTCT 447468 28 100.0 32 ............................ ATCGCTGCCGTGATTGCATTAATTGCGCGCAC 447528 28 100.0 32 ............................ TAAACCAGAACCAGAGCTTGAGTTGGAGAAAG 447588 28 100.0 32 ............................ AAAAAGGGTGGTCGTTTGAGTCACTGGGTCAA 447648 28 100.0 32 ............................ TTCCGGCGTGCGGATTACAATTCGAAACTTGA 447708 28 100.0 32 ............................ ATTTGGCAGTACCACTGAGTGAGCCAAAAAGG 447768 28 100.0 32 ............................ ATTACGCACTTTAGGAGCAAAACCACGAGAAC 447828 28 100.0 32 ............................ CGACTGAGCGACAGAACTCAAGAGACAATTAT 447888 28 100.0 32 ............................ AAGTTGCCGAAGAGCACAATAAAACCATTTTA 447948 28 100.0 32 ............................ TTTAATGATGGAAATAAGCGTACCGCGTTTGT 448008 28 100.0 32 ............................ GATCATCTTTTCAGCTTCAAATGTCCCAGAAA 448068 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGTTAGAATCGAGTGCAAGACCATGTTTTATCAATTCTCCAAATTCACAGGTAGGTTGAAATGTTTACTCAAAAAGAACGCCGATATATTAAAAACTGTTTGAAAGAGAAACTTGAGCGAGAGCAACTTCAGTTGTCTCAGATGGATGAGGATACTGATGAATACATGGAAAAGGCAAATGATCTAATGGTTCTGGATTCACTAATAGCTAAACTTAGTGATTAAACAAACATAACAAACGCTTCAAGAAGGACAGCCAACGCGTGGCATTTTTACTATGCGTTGGTTTTTGTGGTTACGGTGTTATGAGGAAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTTGTTGAATCCTAACATATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTACTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : AATATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCAGTTTTGGTTTGGATGCGCATTTGAGGTGACAGCTGGTTAGTTTGAGCGCAGTGGTTTGCGTTGCTTGCCCCTTAATGCGGCGTTAGGCGATATTCGTGAAATTACACAAATGATTCGTTGATTCTTAATCGTGATTCTTTGAATTATTTTATTTAATCAATAAGTTGTTGGAGTTATCAAGTTAGTAGCCAAAGAAAATATTATCAATTTTCTGTCCTCATAAAAGTTAACGATCGAGTCTGTTCATATTTGATAAGCTTTGTGCTTCTCGTTCTTCGAGTCTTAAGTTCATCCTTAACAGTTGAGTGATTTTGCGATGAGCTTGGTGGCCGTGATTTTTTTTGAACTAGACCATGAGTTTCGTTGTTGGCAAGTGAATATTACAGGGTCAATGTTAAACTCACATGTTGTTTTAATTTGGTTTGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 502651-503145 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIE01000002.1 Vibrio cincinnatiensis strain NCTC12012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 502651 28 100.0 32 ............................ CAATGAATTGCAGTTGCGCGTTTGCTCCCTGA 502711 28 100.0 33 ............................ ATCATGGAGTCACAGCGTGACATCGTTGAAATT 502772 28 100.0 32 ............................ GTCAAGCATCCCCCAGCGATTAGTAGGCCCAA 502832 28 100.0 32 ............................ TAATGGCAAGATTTACGGGATACCTTTCAACT 502892 28 100.0 32 ............................ CAAAATGAGGCAGCTAAAATATCACACGCAAC 502952 28 100.0 32 ............................ CTGTAGAGGGCGTGAACTGGGGCAATCAAGCA 503012 28 100.0 32 ............................ AAGAGAAAATAACAGGAAATAATATTATCCCT 503072 28 100.0 18 ............................ TTGATTTAAACATAGCAG Deletion [503118] 503118 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 30 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATGCGACTTTCCTTAGAGACTTTCAAATCTTACCTGAGTTTCAGGGCATAGGAATTGGAAGTAAGTGTCTTGATTTAGTTGTTAGATACGCTTTAGATAGACAATCCATTAGGTTAGTTCTGCGAGTTTTTAGTGAAAATCCAGCGATCAATCTGTATGAATCCAAGGGCTTCGTGAGAACATCTGAAGTTAACGGGTTGGTTGAAATGGAGTTTCCTTTAAATTCAAACACATAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTATTATGCGTTGGTTTTTGTGATTACGGTGTTATGCGGTGAGTTGGTAGTAGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCACCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGATAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : ATATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGACATTTCTAGTTTGGACTGGCATTTGAGGTTACGGCAGGTTAGTTTAAGTTCAACTGTTAGCGTTGCTTGCCCCTTAATGCGGCGTTATGTAACCGTAGAGAAAAAGCCCACAATGCATTGAAAATTAAAGTATTTTTATCCTTTTGTATTTTAAGATAGAGCTTCTACTTTGCATGTTCGATACATTTAACTAATTGTTTTAAATGGTTATTTTTAAATTTATAAATTCAGTTTTATCCATATTAGATTAGTGTTCGTCTTCTTATCCTTCGAATCTGTATTCAGTACTTAATGGTGAAGTTGGTTTGCGTTCAGCTTGTCTATAGTCATGATCCGCAGACTCCAGTTGCTTTTGTGGTTGTCAGAGTTTTTTCTACTGGGTCAATGCTGACTTTTCGTGTAAGTTAAATCGTGTTTGGCGATGCTGTTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 529144-530192 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIE01000002.1 Vibrio cincinnatiensis strain NCTC12012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 529144 28 100.0 32 ............................ TCCACCGCGCAAGTGCGGAGCAACAACTTCTG 529204 28 100.0 32 ............................ AAAAGCAAACGAAGCGGAGCCGCTACCATTTT 529264 28 100.0 32 ............................ CGATTCGCCAAGCTCGCGTGATAACCCATATC 529324 28 100.0 32 ............................ AGCAAGGGCAATAGTTTGACCATATTTAGTAT 529384 28 100.0 32 ............................ TTCGGTTAAAATTACTCGTGTTGATATTGCTT 529444 28 100.0 32 ............................ ATTGGTGTGATTGATAGTGATTACCGTGGTGA 529504 28 100.0 32 ............................ CTAAAAAACGTCCGGTTTATTTTGAACGTCAC 529564 28 100.0 33 ............................ ATAAAAAAGAAGGGTGGTTTTAATTATGGCTTT 529625 28 100.0 32 ............................ CTCACCAACAAGCAAATACTCCGCAATGCCTT 529685 28 100.0 32 ............................ GCTCGGCAATAGCGATAAATTCGCCACTCGAT 529745 28 100.0 32 ............................ GTCTTGGGCAACGAAGCCAGCATGAGTGAATA 529805 28 100.0 32 ............................ ATTACCGAAGAAGTCGTCACTCACTCAGTAGA 529865 28 100.0 32 ............................ GGAATGCAAGCGCCTTATGCGATTAGCAACAA 529925 28 100.0 32 ............................ GTTTAAGCCCTCTCGAAACTTTTTTCGCGCCG 529985 28 100.0 32 ............................ TAGATTAGTCAATGCGTTACATGAAGCGCGGC 530045 28 100.0 32 ............................ AACATCAAGATTCCCTCTTGGACGGCATCGTA 530105 28 100.0 32 ............................ GGGAACTGGGAACGTGACCTCGTTTTTTTGAT 530165 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CCAACCAAGAATGGCAAATGCTTATCGACAAATCTAAATCGAGTTCCTTGTCAACACTCGCATTTTACCTGACTGGATGAACAAGGTTTCCTGACGATACAGCGGAAGTGTATACTGATATTTGCCTAAAATAATGTTGGCAAGCAGACTTTCGGTGGCGAAGCTTTAGGGATGATGCTTATCGGTGCGGGTTGTTGGTGAATCCTAACGACTGCTGATTTGGGGATTTTTACGGTTGTTTATGAGCTACACATTTGCTATATCAATATAGTTTGTTGCTGTGGTGTTTGTTTGTAATATATTGATATATAAAAATAAAGTGTTGTCTGCGTTGGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTTTATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTGGTAACTTTGGCATTTGGGATTGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGTATTTTTGGTTCGGGTGAGCATTTGAGGTGACGGCTGTTTAGTTTAAGTGCAGCGTTTTGCGTTACTTGCCCCTTAATGCAGCGTTATGTAACCGTAAAGAAAAAGACCGCAATATATTGAAAATTAAAAATATTTTTATGCTTTTGCTTTTTTAAGTTGGCTTCTACTTCACATGTTTATGGTTTTAACTTAGTGTTTTAATTGGTTATTTATAAAGTTTGTAAAGTCAGTCTTATTCATGTTGGTTTCGTTTCCGTCTTCTTGTTCTTCGAGTTTTCAGTCTTTTCTCAATGGTTAAGTGAGTTTGCGATAAGTTTGGTGGCTGTTATTTTTTTCTTTGAACTAGGGCTCGCAGTTTCGTCGTTGTCACGCAAATTCTACTGGGTTACTGCTAACTTTTCATGTAAGTTAAACGATATTTGGCAATGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //