Array 1 416118-416270 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJXB01000003.1 Paenibacillus sp. LC-T2 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 416118 24 95.8 39 .................A...... GATAGCATAAGCTTCTTGAACGCACTTCGTACAAAACTA 416181 24 100.0 42 ........................ GTGGAGCCTTAACTCCACTGATTTACTTCGCAATAAAACTCG 416247 24 95.8 0 ......................G. | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 97.2 41 CTTCGAAAGCATACGCTTAGTTTT # Left flank : AATGTGTCTCTGCCTTCAGCAGATTCTGATGCTCATGCTGTCCATGAATATTGACTAGCTGTTCACCAATTTCCCGCAGCATGCTTAGATTAACCAATTGTCCGTTTACACGTGAAGCGCTTTTGCCCTGTGAAGTGATTTCGCGTCGTATCACCAGATGCTCCTCTTGCTGTGCCCGGATGCCCAGACGCTCCAGTGTCTCCCATACAGGATGACCGTCAGGCAGACTGAAGAGCGCTTCCATCTCTGCCTTTTCACAACCGTAACGAATGGAATCCGCGGAGCCACGCCCTCCGGCAATGAGTCCAAGCGCATCAATGATTATTGATTTACCAGCACCTGTCTCCCCCGTAAGCACATGAAATCCAGGATAGAAATGTACATCCACTGCCTCAACAACGGCAAGATTGCGAATTGACAAGGTTTCTAACACTAATAGAGCACCTCCTAAAAGTTTTATGGAGCTATCACTCCATAGATTTACTTCGCAATAAAACTCG # Right flank : TTAGGATATGTATCCCATGATTTGCGCAATTACATTCTTGCTGTCTTCTGGCTGGCGGCAGATAATGAGGATGGTATCATCACCTGAAATGGTACCCATAATTTGCGGCCAGTTAATATTGTCAATCAGAGCCGCCACGGAGTTAGCCGTTCCCGGCAAACATTTCATAACAACCAAGTTGGCGGAGAAATCAATTTGCACAAAATTATCAACCAGTACCCGCTTCAGTTTCTGGGTAGGATTGTAACGCTGATCGGTTGGAAGTGAATATTTATATCTTCCATCATCCATCGGAACCTTAATTAGCAAAAGCTCCTTAATATCACGTGAGACTGTAGCCTGAGTGACCTGAAATCCAGATTCACGTAATGTCTCCACTAGCTCGTCCTGTGTCTCGATATCCTTATGCGTAATAATTTCGCGAATCTTAATATGTCTTTGTCCCTTCATTGGTGCCTCCCGTATTTAAAAGATTAACTTTAATTCGATTCTCCATCGTC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGAAAGCATACGCTTAGTTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 990810-989983 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJXB01000002.1 Paenibacillus sp. LC-T2 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 990809 32 100.0 34 ................................ ACTGGTGAAATTTTTGAAAGAAAAGAATCCTAGA 990743 32 100.0 35 ................................ AAAGAGCAAGAAGATAAAAAGGTAGCTGAGAAACA 990676 32 96.9 34 ......................A......... TTTGGTGCGTCCTCGTAGGTCTTGAACGATTTGT 990610 32 100.0 36 ................................ CTTGATCTGGTCAAGTGCTCTCTGGACGTCGAAGTC 990542 32 100.0 33 ................................ TTTATGACATCCCGGGCCACAAGCTGGTAATAT 990477 32 100.0 36 ................................ ATAACCGAAGTGGAGGCGATCATATGAGCAAATCAG 990409 32 100.0 34 ................................ ATTAAATCTGCTCGATATGATTTTAGAAATGAGC 990343 32 100.0 33 ................................ CTGACGCTGGACGGGATGCAATATGTCTTGTTT 990278 32 100.0 34 ................................ CTTGTAGCGCCTTACTAGACAATCTTCTAACGCT 990212 32 96.9 35 .......T........................ CAGTGGGCGCTGGTCCTGCTGATGTTTACGTTAGG 990145 32 100.0 33 ................................ ACAAAATGTAACTTATTTATATATAAATACTGG 990080 32 96.9 34 ..........A..................... GCTCTGACTGTGGTTGTACAGGTTTCCTGCTGTA 990014 32 93.8 0 ...........CA................... | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.8 34 GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAT # Left flank : CTCCAGCAAAAAGAACGAGACTGCAAGCGCCGGACTTGACGTGAAGTTATCCAGTTGCCCCCAAAAGGCAAGAGGAGTATGGAGCGAATCTCATATGAAAACAAAAAATCCGTTCAAGGGCTTGAAGCGATTACATATCGGTGGAGAGGCGGAAATTAGCCTGCTCAAATTCTTTCTTTTACGAATATTTACTTTTTCAGGAGTAACTGTTTTAGCAAATTAGTCAAAAGAAAATTTGGACAGACCGTAGTTTACGAATCTATTAACAACTATAATTAAGCGTGTAACTAAAATAGGCTATAGTATTGATCAGAGTTCGTTTGATTTTGCAGTGCGAATGTAGAGCGCACATGAAATCCCCGGGTCCTTCGCACCGAATTTATTACATTATTTGTATGAAATATTGAAAAAGGCATCACTGCTGTTTGGTATCTAGCGTAATAAAGTAAATATAAGAAAAGTTAAAATGGTTTTATGCTGTTTTTAAGTGTAAAACCGCA # Right flank : CGGTTGGATTAAGGTAAACATCGTCAATCTCCAGTAGCACTTTCTTAATGTAGGATAAATTGATAAGTGCGATGAACTCTTTAAAACGTGCTAAAGCAAGCAGCAATGGCCCAAAAACGCAGAGCAGCGATCCTCCAATAACGGGAGAATCGCTGCTCTGCTGGTTTTAACGGTTTTGAGGATAATGAGGATCTGTCTCCGCTTGATTTCATAGCGGACTGTAGATCCCTTATTTCTTCTTCACAGGAACCCAAACTTCACAGCGGTAATCCTCGGCATTCGGATCGCCCGGCGGGTATAACTCGAACTCCGGTCCGCCCGTATGCTCATAACCTGTTCCCGGGAACCATTCCTGGAAAACCCTCTGCCACACCTGTTGAATCGCATCTGGCATCGGTCCAATAGAGGTGAATACGGCCCAGCTAGCAGCGGGGATGACTGTGCTTGCATAATCCTCAGTGCCGGTTCCGGGTTCTCCCTCCACAGCAATCCAATACGAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 993680-992806 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJXB01000002.1 Paenibacillus sp. LC-T2 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================================================================== ================== 993679 31 100.0 34 ............................... ACAACGATTGATATGGAAAATCCATTATGCCGAG 993614 31 100.0 35 ............................... ATTCCATGGGTTGAACGTGATGGTGAGTTGCTTAG 993548 31 100.0 35 ............................... AGGTTAGAGAAATTAGAAGCAGTCACGTTAATAAG 993482 31 100.0 36 ............................... ATAAAAGGCCTGATATTGATCATCGGTGTAATCCCG 993415 31 100.0 37 ............................... ATCCGTCATTCACCGCCTAAGAGCATGCCATAAATCG 993347 31 100.0 35 ............................... TCTGAATATCTGCTCATGCTGGATTTACTCCTTAG 993281 31 93.5 35 ............T.A................ ATTACTAACTGCGGAAGCCAACTGATCAATGCGAG 993215 31 100.0 35 ............................... ATGATTTTGCTCAGTTTGGCTTGAACATCTGGATG 993149 31 93.5 35 .....T.....A................... TAGATCCCCAGCGTTGAGCTGTGCGACCATCTCAG 993083 31 93.5 35 .....T...............A......... TTTTTTACAGTGTGCCTTAGCTTCATTTTCTGCTG 993017 30 96.8 35 ............-.................. TCCGTGCCCCATTTGCTGCCGGACTTAAATTTAAG 992952 31 90.3 83 .................ATT........... GCGCTTGCATAGGTTGCGACATATTCCTAACATGTGGGTTGGAAATATCCATTCGTTGTCTTGCATCAGGTCAGTACCCACTG C [992932] 992837 31 87.1 0 ........T..TTA................. | A [992822] ========== ====== ====== ====== =============================== =================================================================================== ================== 13 31 96.5 39 TCGCTCCCCATGCGGGAGCGTGGATTGAAAT # Left flank : ATACGGTTACGGAAAAGTGCAGTTCAAGATTAAGGATCTTTGTCTAGAGAAACAAGGCAACGATTTTGAATCGTTGATTGTTAATACGAGCGATGAGTTGCAAAGTAATTATACTGAGTATATTGATGCTTTTATTGAGGCTATGAACGGCCCTGATCTCTTCAATCGGATTCATCTGGACCGATATATTCGGAGTAAGCAAGAGATAGACTTTGCAGGGAAAGAAAATCATTGTAATTGGGATAATTTAGAATATAAAATTTCTACCTCTGATCGTGAAGGTGGGAAAAAGGGAGGAGGCTATCCTGCAAATTGGGTTTTGGAAAGATAGGAGAGTCTGGTGCGAACCCCAAGCTCTCATGAAATCCCCGGGTCCTCCGCACCACGTTTATTACATTATTTGTATGTATAATGGATGAGTCAGCCTATTCATTAATGAATTAAGTGGTTTTATTGCTTTTAAAAAGGTTTTTCATCCTTTTTTTAGTCGGAAATCGCCG # Right flank : TCTAAACGTTGATCCTAGTCCAATAAAAAAGTCTATACCAAGTAGCCGTTTTTGGCTTATGGAATAGACTTTTGAAAATATGAATAGTTTGTTCAGTTTACAATGCCATAACTCCATAAAATTATCGGATTATTTAGCGTTATTGATAATGCTTAATCACAACTCATTTAATTAAATGAGTAAACTTTTCGGGAGCTTTGCGAATTTCCTGTGCTAATCGCTCGTAATCCTCCGTCAATTTAATGGAACGAACTCTTTTCGCACCAAGATCACGTGGTTCGATAAACTCAGCTTGCCTCCAGTGACCTATCTTTTCTCTTATCGAGCGATCTGACAAGTGAAGGAGTTCCCTCATCTCACTAGTCGTTATCGTATCTTGTTTAAAAGTTAACTGGGCGAATACCATTCTTTGCTGAGGGTCTAACTTTCGAATTAGCTCCGGTTCGATTTTCGTCATTTGAGCGGATTTTTCCACCACAATAGATGCGGCCTCTTGAAAG # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:-0.31, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1005782-1004291 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJXB01000002.1 Paenibacillus sp. LC-T2 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1005781 32 100.0 34 ................................ AGCTTGAACTCATCGTCATAAGCATCCCTTAAGT 1005715 32 100.0 34 ................................ ATGTTTAACTTTATCACCATTGCGGGAAACGATA 1005649 32 100.0 35 ................................ AATTTTGTTTGGCCCGTTATTAAGGTGGTTGTGAT 1005582 32 100.0 33 ................................ AACCATCCGTCCGCATTTTGGCAACAAATCCGT 1005517 32 100.0 33 ................................ GATATGTGTGTATCCCTTATCGCTGTTGTCGGT 1005452 32 100.0 34 ................................ GAGTTGATCCACTGCATATTCTCTTCAACCTCCC 1005386 32 100.0 33 ................................ CCCACTATGGATGGCGGTGTAAGCAGCATAGTC 1005321 32 100.0 35 ................................ TGTCCAGCATTGGCTTGTGTATTGGCTGGTGGAGC 1005254 32 100.0 35 ................................ GATCTCCCAGTTTGCTCCGTAGTTATCGTGCTTAA 1005187 32 100.0 34 ................................ CATTGTCATAATACAAATACTGTCGTAAAGACCC 1005121 32 100.0 33 ................................ TGGAATCGCTGGAAGTCCTGACGTCTCTTGGAT 1005056 32 100.0 35 ................................ CACGCTAAACCTCATAGGAGCCTCATACAGAGACT 1004989 32 96.9 35 A............................... CGATGTGTAATGCGATTATATTTGATATGGGACAA 1004922 32 100.0 35 ................................ TGAAACCACTCTTTGTAGATGGTTCCTTGAGTTTC 1004855 32 100.0 35 ................................ ACAATCCGATACCATACCGGATATTACCTTTTTAT 1004788 32 100.0 33 ................................ CGATATTAGACCATCGTCGCTGATAGTTATCTG 1004723 32 100.0 35 ................................ CAATATTTACCCGCTGCTGCTTTTGCGTATTGATC 1004656 32 100.0 36 ................................ ATAAAACTGTACTGCTTAACATGCATATATCTAGGT 1004588 32 100.0 36 ................................ TAATAGAGCGATACGCTCAAGAGCCCTGCGCAAGTC 1004520 32 100.0 35 ................................ AGCTGCCCCCCTCTCGTCCCCCTCTCGGACATACT 1004453 32 100.0 34 ................................ TCCTACAGCTCCGTTTGCCAAGGTGTTGATATTG 1004387 32 96.9 33 ....................A........... TATGACCCGGTGCCCTTCGGTCCTAACCACGTT 1004322 32 90.6 0 ..........A.A..........A........ | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 99.3 34 GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAT # Left flank : CTTAGAAAAGACGTCCGATCCATGACTTGGGTGTCTATTCTTGCTCTAATATAAATCCCGGATACTGACTTTAGCGCAATTAAACTAAGTGGGGCATGGGGGGAGGCAGAGTGCCTGAATTTACGGGATTGTTCAACTGTGTGATAGCGTCATATTTACTCATGCAGCATGAGATTTGAAATAATGAAGCGGTTATTAGAGGAAAGGTGCTGCTGTTTGCTACGAAATGACGTACAATAAGGGTGTAATCTATCTATCAGCGAGCACAAAGAATAAAGTTGATTTTGCATTTTCCAAAAAAAATTTGGCTTAAAAGTATTTCTAGTAATTGGTGCGAATGTATAGCGCACATGAAAACCCCGGCTCATTCGCACCAAATTTATTACAAATTTTGTATGAAATATTGATAAAGATGTCACTGTTGTTCGGGATCTAGCGTAATAAAGTAAATATAAGAGAAGTTAAAATGGATTTATGCTGTTTTTAAGTGTAAAATCGCA # Right flank : ATAGATCGACCATCGTTTTTGCACCAACAAACAGTCGCTCCCGCACAGGGAGCGACTGTTTTAAATTACGGGGACTGCTTCTCAGCGATCGAATAACCTTGAATACGAGATATATTTGTCCAATATTGTAATAATTTAAAAGGGATATTGTCGGTATATAGCGAATTAATCTTCTGTTAGATGATTTGAATGTATCTGAGTATAGTAGGTTCGCTATAGATAGAAAGCGGATACATCTTACACAAGGAGCTTAGAGAAGCAAGTATGTTGGAACATTTAAAGCTACTGCAGGTACGGGCGCATTTCACAGCACAAGAAGCGGGGCAATTGCCTCCTTATCTTGGTTCGACCTTGCGGGGAATATTGGGGCATTGTTTGCGTGATTTTGTATGCATTCATCCCATGCTGCGCTGTCATTTGTGTGAACTCTCCACCAGTTGTGCGTATGCACTGAGTTTCAATTCTCCGGGCAACGAGGCGGGAGCGGTTAATCCGTTTGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1008282-1007586 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJXB01000002.1 Paenibacillus sp. LC-T2 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1008281 31 96.9 34 ......-......................... CCGTCCAACGGGTTGAAGCGAATCCAAGCGCCAT 1008216 32 100.0 36 ................................ AAAGATGTGATCATGAGTGTGAATCATGATCTGAAG 1008148 32 96.9 35 .....................A.......... AACTGACGCTGAACTAAGGAGGCGAGAACTTTGGC 1008081 32 100.0 35 ................................ CAAAGCCAAAGAAAAGTTAGCCGAAGACGAGAGAA 1008014 32 100.0 33 ................................ TCGAAGATCGCTAGTGGGTATGTATGTTTCCTC 1007949 32 100.0 33 ................................ TTCAAAATCAAGTCACCGTCACGGCTTATGGCT 1007884 32 100.0 32 ................................ AGATCATATAATCCCTTCATTGGTCTACCATT 1007820 32 100.0 36 ................................ ATTATCTTCGTCTATATTGATCCAAACTGCATTCGT 1007752 32 100.0 35 ................................ CAGTTTGAGATGTGATTTGTGCTAGATCAGTGGTT 1007685 32 96.9 36 ..........A..................... CTCAATACGTAACAGGCAAGTTGTAGCCTCTATGTA 1007617 32 75.0 0 .......ATTAA..A.....A..A........ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 96.9 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : AGCGGGTGATGGCGCTGCTGTCTTGGGCAAGGAGCCGTTTACGGTTACTCGGCGGTATATCTCTTCAGGTGTAATGTCCACACCATCTTTATAGGTTTCCTCTGCAAATATTACATACAAAGGGACAATGCCAATATCATAGGTTTCTTTCCAGCCCTTAGGCAAATCGGAAGTGCTGTCTGAGAATATTTTTACGTTAGACATGAATTTCTCCTTCACCAAATCTTGGATATGAATAGTCAGATACATGACAAATATAATACTTTTTATTATAGCAAGGCTAGGCTGATTCTCAAAACAATAAATAATAGTTTCCTGTTTTGGAACTTTATTGGTTTTTTAGGAGCGGAATCAACGTAAGCCATTAAGTATGGTTTGAGCCGCAGGCACCGGGGCCTTGCTGGCTTTAGCAAATTATCTTTTTGTTTCTCTCACTAGAGAATAAAGCGTATTTTGATGCAAAAAAAGATTTTTGTTCCTTTTTTTGCATCAAAATCGCT # Right flank : TCGTCCGTAAATTTCGATAGCTAGCCGCTTATTGTTGCTACTTATGAAGGAGTATGGGATGAAATAGAACATAAGCTCAACGGTTCCGGTAGACTGAGCATGCATGATGTAATTTTCAAGTGTTGCTACATAGTAGTTTGGGCGAGAAAGCCGAGAAAACAAAAAGCACTGAATTTCCGCTTAATCAGCAGGAATTCAGTGCTTTTTTACAATTCCAAATTATATTTTGCGTCGTACTTCGAATAAATCGTTTGGACTGACCTCGAAATATAGACATAACTTCATTATCAGTTCCGCTGAGATTTTCTTCTTATCCATATTAGTATTATGGATTAATTCCATAATCGTTGTTCTTCGGTGCCCGATTTCCTTGGACAATTTTAATACGGATATATTTCGTTCTTTTAGTATTTTATCCAATTTGCAGTAAAGTGTGTATTCGTGAAATTCCATGTGGGTCCTCCGCATATCAGAATTAGTTGCACTTTTAAAGTGCATAT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //