Array 1 453058-454433 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUZ01000001.1 Ligilactobacillus salivarius strain FNMGHLBE2_L7 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 453058 36 88.9 39 AGA..........T...................... TGTTCTACCCAGCTTTCATTATATCTCAAAAACGATGAA A [453061] 453134 36 97.2 40 .............T...................... GGAGTGATGCAAATGGAAGCTACATACATAGCTTATGACG 453210 36 97.2 39 .............T...................... TGTTCTACCCAGCTTTCATTATATCTCAAAAACGATGAA 453285 36 97.2 39 .............T...................... ACTTGGTACGTTGATTGAGAAAGCGTTGAGAGAATACTT 453360 36 97.2 39 .............T...................... AAGGTGGGATAACATTTATTGGTTAAACTCCAAAGTTTA 453435 36 100.0 39 .................................... ATCAAGCCAGAATGAAAGAGTTTAAAGTATCTAGATTTT 453510 36 100.0 33 .................................... ATCGAAAACGAGGCTAATAAGTAATGTTTGGAA 453579 36 100.0 36 .................................... TAGAACTCAGCGAAAAAGGGTCAACCATGAAAACTA 453651 36 100.0 38 .................................... TTTAGAACGTGATTTAAAAGATAACTTTACAATTTCAC 453725 36 100.0 39 .................................... ATTTCTTTTTTTACAATCATCATCACTTCATCCAAACTA 453800 36 100.0 41 .................................... TATCAGTTGTTGGAAACAAGGTTATAAATACTAACACTGGA 453877 36 100.0 39 .................................... TTACAGCGCTTACGATATTCAGAAAAAAACTGGGGTTAG 453952 36 100.0 37 .................................... GGAAACGACCGTATTCCGCGAAGGAAACAAGGTTGTC 454025 36 100.0 42 .................................... TCAAATATATTGATGCTTTTAATCAAATGGAAAATCAAATTA 454103 36 100.0 35 .................................... TTAATCTTAACTGTCACGATAATCTTTGCGATAGT 454174 36 100.0 36 .................................... ATATTTGATTTTGAATTCATCTACTTTGTGTCCTGT 454246 36 100.0 39 .................................... ATGGAAAAGCAGCTTCAACAGCAGAAACCACTCAGCTTA 454321 36 100.0 41 .................................... CGAACTAGGCGATCCGTCAACGGTGATCTTCGTTGATGATA 454398 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 19 36 98.8 38 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : TATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTANCGAACTAGGCGATCCGTCAACGGTGATCTTCGTTGATGATAGTTTTCGTCTCCTATATTCGGAGATATGTTCTTACTATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTATTTCTTCTAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : GTTTTCGTCTCCTTTATTCGGAGATATGTTCTTACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 50198-47398 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUZ01000006.1 Ligilactobacillus salivarius strain FNMGHLBE2_L7 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 50197 36 100.0 30 .................................... TAACCAAACAATTAGGCTTACAAGAAGCCC 50131 36 100.0 30 .................................... TCTTCCGGTTCTGCATCAGTTACACCGCAT 50065 36 100.0 30 .................................... AAGAATTAGAAGCACCTATTCCTTCTAAGT 49999 36 100.0 30 .................................... TAGCATTGTCATATCTTATTACTCTGAATA 49933 36 100.0 31 .................................... TACCGGTATAACAATAAAACAATAGGAGAGT 49866 36 100.0 30 .................................... CATCTCCTTGTTGTTTTAATATTATACTAG 49800 36 100.0 30 .................................... CTAAAGTGTCTTCATCAAGCCCATACGAGC 49734 36 100.0 30 .................................... GATATTTCTTGTCCAATTCCTTAAGCATAT 49668 36 100.0 30 .................................... CGTAAAATCAAAGCCTTGAATTTAAAAGTA 49602 36 100.0 30 .................................... TACTTGTCTACTCTAAACGTATTACTACAG 49536 36 100.0 30 .................................... AGCTAAGGAAAAACGTAATCTCCAAGCTAG 49470 36 100.0 30 .................................... CCAAAGCAACTACTACAAAGAATACTAATG 49404 36 100.0 30 .................................... TGATCGTTTAAAATCATTCTGCCATTTTTT 49338 36 100.0 30 .................................... TATCTAAGTCTGCTTATGGTAATGATCCTG 49272 36 100.0 30 .................................... CAACATCAACTGTTGTTCCGTCAACTAAAC 49206 36 100.0 30 .................................... TAATTCCATTGATAGAACACTAGGAGGAGA 49140 36 100.0 31 .................................... TACCGGTATAACAATAAAACAATAGGAGAGT 49073 36 100.0 30 .................................... TTAATGCTTTATTGAACAAATTGTTATATT 49007 36 100.0 31 .................................... TACCGGTATAACAATAAAACAATAGGAGAGA 48940 36 100.0 30 .................................... CTCATTTCTTCGAAATACATATATTTGCCG 48874 36 97.2 30 C................................... ACAAGGTCCATGATTTGTCCCGTATCTCCT 48808 36 100.0 30 .................................... CTCATTTCTTGGAAATACATATATTTGCCG 48742 36 100.0 30 .................................... GCAAACAGTATATAACTGCCTTAAAGAATT 48676 35 97.2 30 .........................-.......... TAAAAAAAATTTGGTAAAAAGGGTTGATAC 48611 36 94.4 30 ..............G....................T CTCATTTCTTGGAAATACATATATTGGCCG 48545 36 97.2 30 ...............G.................... TAAAAAAAATTTGGTAAAAAGTGTTGATAC 48479 36 100.0 30 .................................... AAAGTATTCAAACACCAAGACACTCAAACT 48413 36 100.0 30 .................................... CGATATTTGCAACAAAATTGATGCAGAGTA 48347 36 100.0 30 .................................... GATTTGAGACAATGCAGGGGGCTTCCATAT 48281 36 100.0 30 .................................... ATTTTCCTTATCGTTATTCAATCAAACAAG 48215 36 100.0 30 .................................... AATCTAAGTGTTTTAAATGATGCTCCAATT 48149 36 100.0 30 .................................... GTATTCATTAGATTATAGTGCACCTTTGTA 48083 36 100.0 30 .................................... TTCAAGTTCATTATTTTGGCAAGGAACAAT 48017 36 100.0 30 .................................... TAAATAAATTGATGCTGTATCTTTTCGTGG 47951 36 100.0 30 .................................... TAGGTTCGATTTTATGGGGCTTTACGTGAG 47885 36 97.2 32 ...................................A CCGGTACTAGAACTGCTAGGACTGCTGATAGG 47817 36 97.2 30 ..................G................. AAGATTACGGAGATAGAATTATAGATTTGC 47751 36 100.0 30 .................................... TTGATAAGCGAACCATTTATCGCCTTTCTT 47685 36 100.0 30 .................................... CATTTTTTGCGAAAAAAGTAACAATTATTG 47619 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 47499 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 47433 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 42 36 98.7 31 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : ATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAANAAATCAATTAGGTTAAGACCGATTTGAGACAATGCAGGGGGCTTCCAAAA # Right flank : TAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGTTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //