Array 1 887799-888984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINV010000001.1 Saccharothrix coeruleofusca strain DSM 43679 Ga0451103_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 887799 29 93.1 32 ...........................AC GCGACACGGGCGATGTGGTGGTCCCAGCCGTA 887860 29 96.6 32 ...........................A. CTTTCGCCGCGGGCTTGCTGGGGGCGGCGAGG 887921 29 96.6 32 ............................C GTCGAGGCCGTACCGCACGATGACCCCAACGG 887982 29 100.0 32 ............................. CTGTGCCAGACCAGCGCCCGATCCCGCATCGC 888043 29 96.6 32 ............................C ACCGGCCGGTGGAGGCACCCCGTGTTCGGCAA 888104 29 100.0 32 ............................. GCCACTGTGCCCATCTGGGGACGGATCACCCG 888165 29 96.6 32 ............................C GCGGACTGCTGGTGCACGTCGACGCCTACCAC 888226 29 100.0 32 ............................. ACCAGCCTGATCCACCGCAAGCGCGCCCGGAT 888287 29 93.1 32 .........A..................C TGTATCCCAGACTCGCTATCAGGTCGTTCAGC 888348 29 96.6 32 ............................T CCGAGTGTGCGGAAGAACCCGCCGTATTCCTC 888409 29 100.0 32 ............................. CGTCGCGTCGTGACGCGCACGGCGACCGGGCA 888470 29 100.0 32 ............................. GTGTTGGGGGTGTGGCCGCGCGAGTTCCGGCG 888531 29 100.0 32 ............................. GCGCACGAGACCGAAGGCCCGTGGAAGGCGGC 888592 29 96.6 32 ....G........................ ACGAGTTCGAGGTCGACCACCGTGCCGCCGGT 888653 29 96.6 32 .......T..................... GCCGACGCCGACACCATCCCCACGGAGACCTA 888714 28 93.1 32 ............G....-........... CCGGTGGCAGCCACGTCAGCCTCGGGGCCAAC 888774 29 96.6 32 ......T...................... GTGCTGAGCGGGATGCCTGCGGCCGCTGTTGC 888835 29 93.1 32 ............T...............C GATAAGGGCGGCCGGTCGCTGACGATCGACAG 888896 29 86.2 31 .G........T.T..........A..... GCCTGCACGGTTTGGTTGCTGGCTGCCGGGC 888956 29 93.1 0 ....................T......T. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 96.2 32 CTCGACCCCGCGCACGCGGGGGTGTTCCG # Left flank : GACCAAATGGGGTCGCCTCGAACGGGTGAATGTCGCCAACCGACGTCAAACGTCACCCGGTGGTGGTGACCGGCTGCGGGATTCGTCAAGTGTTGCGGATCGGCGTCGGTGTGTTGCGGAAGGCGGCCTGGCGTCGGGTAAGGGCGGGAACGGGCTCCGGTTGCGCGTAGCGGGCCGTTGGGCGTCCCGATGACATTCCTTCTGCGGTGTCGGTGTTGGTCGCGTCATGGCCGGTCGGTGAGGTCGTTGCGGTGATGATGAGTGGTCCTGTGGGGTTGCCGGATGGCGTGTGGTGTCGTGAAGAGACGGTGGTTGTCGGGGTGGTCGGTTCGGAGTCGGTGGTCGTGCTCGGGTGTGAGGGGGTCGGGTTGGTGACGTTGGACGGGGTGTCGGACTGGTGGGCGGAGGTGTGTGGATGTGTGATCGGGTTGGCTGGCGGGTGCAGAAACGGAGTGAATGAGAAACGCTGTTCTGGTTGATAGAGTTCCTGGTCATCAAGC # Right flank : GTTCGGCGGCCCCGGCCACCATCCTGACCAACCAGGCCAGGTCAACCCGAAGAAGCAGTTCGTGGAATCGCAGGATTTCCAGGTGGCAGTCACTGAGGCGGTCATCGACAACCGGGAGGCCCACAACACCATGGCCGACTACTTCTTCAGCGACGGACCTGGCATCGGCGCTGTCATCATGGTCCTCGCGGATGCCTTCTACGAGGTCGTGATCGATCAGCAAGTGGAGGCTCGACTCTGCGCTTTCAGTCAGAAGGGGGTCCACTGCCAGGGGCGCTTTATGTCGCCTTGTAGACAGGCCAGGCGGTGGTTGGCTTCGTTCGCCGCGTGGGGGTCGGTGTTGGCTTTGCCGAGGATGAAGGCGGTCCAGCGGAGTTCTGTGGTGGTGGCCAGTGTGCGGTAGCCGGGCCAGGTGGTCACGTCGTAGCCGCCGTAGGCGTTGACGAACGCGTCGTACTGCGCGGGGGTGATGCGGGCGAAGTCGGTGTGGTCGACGGCCA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGACCCCGCGCACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 902523-903715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINV010000001.1 Saccharothrix coeruleofusca strain DSM 43679 Ga0451103_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 902523 37 100.0 35 ..................................... ACGGTCATGCCGCGACCGCCTCGCGCACCCCGGCC 902595 37 100.0 34 ..................................... GACAGCCGGGCCGGACAGCAGCAGCTGACCGATC 902666 37 100.0 36 ..................................... AGGTCCTCCGCGGGCACCTCATCGGCCAGCAGGAAC 902739 37 100.0 35 ..................................... AACGACTGGACCCAACCCGGCACCTCCCGGTTGCG 902811 37 100.0 34 ..................................... ACCACCTGGGCGGGGTTGGCGCCGAGCCGGATCG 902882 37 100.0 37 ..................................... CGGGCTGCCTGCAGAACCCGTGCGGCGCGCATGACGA 902956 37 100.0 36 ..................................... GAGTGGGTGGGCTGCGAGTCCGGCTTGTCTCGTGCG 903029 37 100.0 36 ..................................... TACGGCGAGCCGATCCACGTCTACACCCGGGCGCAG 903102 37 100.0 35 ..................................... CACCGCCACCCCGTCCGGTGCGCCGACGGCTCGCG 903174 37 100.0 35 ..................................... AACGGCTGGGGACCGGCCCCCGTGCTCGGCGAATG 903246 37 100.0 36 ..................................... ACCGCGTAGGCGCCGTAGCAGTAGCCGGTGCCGCTG 903319 37 100.0 36 ..................................... ATCGCCAACGTCCTCCAGAGCTTCGCCGAGATGGAA 903392 37 97.3 34 ..........................A.......... GTGGCCAGGTCGCCGATTTGGTAGGTGTAGACCG 903463 37 97.3 36 ........................T............ AGCGTGGTGCGCTCGCTGGGTGTGCCCATCCCGGTG 903536 37 100.0 34 ..................................... GCCGCGGGGATCGTCGAGGAGGCCCGGCTGGCGG 903607 37 100.0 35 ..................................... ATGGGCAGGCGGATCGGCGAAGAACTGAAGAATAT 903679 37 94.6 0 .............................GG...... | ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 99.4 35 GCAGCGCTGGGACTCGCGTCCCAGCGGGGATCGCAAC # Left flank : CGCGGTGGCCAACTCGACTATCCGAGCCCTGGTTGGCGTATCGGAGCCCCTGGAGACGAGGTGGCGGACATCCGACTTCGCCATGTCCACGGCTACAGCGTGGACACACGGGATGGCAGGAAGCGGTGCATACTCTGCGGCAGCAATTGGATAACCGATCCTAATGCGTCGGTTGCCTTGTGCTGAGATGCCCAGAGGACCCATCGATGCCGGACAACCCGTGATGGCGGTGCTCGTGGGCTCCGGCGACTAGAAGGCCGAAGGGAGCACTCCGGTCGTGGTGGGATCGCTGGCGCCCCGGAGCGCTTCCATATTCTGGCCTGCCCTGGGTTTCGTAAACTGGGTTGCTCATGGAGATGGCTGTGCGGCTGGTTGGGAACCTGGAGCGTGTCACGACACGCCGGGAGGTTCTGAAGCTGCGGCTCGCGTGTCGTCTCGGATTTTGGGATGTCGGGTGGTTCTGTGGTTGGTGAGTATGGGATTGTGCCTGGTCAGGCAGC # Right flank : CCGCGCTGCCACGCGCGACCTCGCCGACACCAATTTGAGACCTACTCGCTTACCGTGTCCGGATTCGACATAAAAGAAGCCTGTTTCCAGGGCCTTGGCCGCCCCCGCCACTGGGGCGGGGTTGCAACTTGTTCTGTCTGTCTGGCCGTGGCAGCGGTGAGCGCCTGTTCGCCGGAGATGGTGGTGAGTAGCCACCTCCGGCGAACACTGCTCCATTCGGGTGTTCTCAGACGCCTTCGGGGAGCCGGGGATCGGTTTTTGTCGGTGGAGGTCTCTAGCCTCGCGTCGTTCGTCGGGGGACGACGATGTGAAAGGTTTTCGTGGTGTGGGCGCACAGTCCCAGTGGTGTAACCGGTCAGTGGCATGGGCTGGCCGATCATGTCCGTTTGACGGCGCGATTGGCCCGTGTTTTTGCGGAACCGTTTGGTGCGGGGGAGTTGGCGTGGAGCCTGGGGCTTGTCCATGACGCAGGCAAGTGCGCAATCGACTGGCAGGACAAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGGACTCGCGTCCCAGCGGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.00,-16.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 912832-914093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINV010000001.1 Saccharothrix coeruleofusca strain DSM 43679 Ga0451103_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 912832 37 100.0 34 ..................................... CTCGCGGAGCTGACTGGAGATGCAGCTCATGATG 912903 37 100.0 35 ..................................... CCGATCCTGGACTCCCGCTACCCCCTGGTCGTCTC 912975 37 100.0 35 ..................................... TGTGGGTCAACTCGACACGGCCGGAGACCACGACT 913047 37 100.0 35 ..................................... ACCTCGGCCTGCAACCGGCTGATCTGGTCGCGCAA 913119 37 100.0 35 ..................................... CGAGGTCCGGCACGTGAACGGCCCGGATGCCGATC 913191 37 100.0 34 ..................................... GCTGATGGCGGTGATGACGTCGATGGGCAGCAGG 913262 37 100.0 36 ..................................... CGCAGGGCCTCAACCATCGGCGTGCCCTCCTGCCTG 913335 37 100.0 36 ..................................... GGACTACTCCGGTGGACGCGCGGCACCTCATGAGTC 913408 37 100.0 35 ..................................... ATCCCCTCGAAGCTGTCGGACAACCCGCACGTCAA 913480 37 100.0 35 ..................................... GGCGCGGCGGTGCGGCGGTGTAGAGCTGGACTCGG 913552 37 100.0 34 ..................................... GAGCGCCACTGGTGCGACGACAGCCCCAAGCGGG 913623 37 97.3 35 ...............G..................... CCTGCTGTCGGGAGTGGCGTCCATGGTGGTCCCGC 913695 37 100.0 36 ..................................... GCGATGGTCTCCGGCGTCACCAGCTTGGTGCTGGGG 913768 37 97.3 36 A.................................... CCAGGCCTCGCGTCCGCCGTCCTCCACGTGGTCGAA 913841 37 100.0 34 ..................................... GCGGGGCGCCGAGAGTACGACGAACTGCTCTACG 913912 37 100.0 34 ..................................... ATGGTCGGTGGCGCGCTGTGGCGGTGGCTGGAAA 913983 37 100.0 36 ..................................... AGCGCGCCGAACAGGCTGCCCATCTGGCCGTCGCTG G [914012] 914057 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 18 37 99.7 35 GCAGCACCAGCCCTCCGGAGCTGGTGGGGATCGCAAC # Left flank : GCCTGCTCGCCCGCCACCTGCGCGGAACAACCGACACCTACCAACCCTGGACGCTCACCTGATGGAACTGCTCATCACCTACGACGTCGACACCACCACACCCGAAGGCGAACGACGACTGCGCCGCGTCGCCAAAATCTGCGAAGGCATCGGCCACAGAGTCCAGAAATCGGTCTTCGAAGTCGTCTGCACCCCACCCCAGAGACTGCACCTCGAAGCACACCTCCAAGCCACCATCGACCCCACCCTCGACTCGGTACGCATCTACCACCTCGACCGCGGCACCTTCCACACCGCCAAACACCTCGGAGCAGCCATCGACGCAGCACACCACGACCCGCTGATCATCTGATGACAGCCACAGCCCTCCGACTTCGGAACCCCAAGCGTGTTCCGACACGCCGCCAGGTCTCGAACTTCATCACGGCGTGTCATCTCATTCAGTGGGAAGTGAGAGTGTTCATGGCAGCTTCCAAAAGCGTCATCGCTGCTCAGGCAGC # Right flank : CAGCGCCGTCAGCGACGGTGGTTCGTGCGTCATGGAAGCAGCGCTGGGACTCGCGTCCCAGCGGGATCGCAACTCGCAGTCCAGCACCAGCACCCGGAACCCGTCAGGGCAGCGCTGGGACTCGTGTCCCAGCGGGATCGCAACCAGCAGATCGTGATGGTGCTGGCCGGGGGCACCGGCAGCGCTGGGACTCGCGTTCCAGCGAGGATTGCAACTCACCGGGGCTGGCCTCGTCGCCGGGGCCACTCTCGGACAGCGCTGGGACTTGCGTCCCAGCGGGATCGCAACTGCATGAGCGCGATCTGCTCGGCCGGGGAGATCACGGCAGCGCTGGGACTCGCGTCCCAGCGGGATCGCAACTGAGATGGGTTCCGCCGGGCGCCGGGCGCCCAGGACGGGGTCAAACGAGCGGTGTAACTCGGGTTAAAGAGGGTTACTTGCGTCCGGCGGCCAGGCGGCCGTCGAAGGCGATCTCGAAGGCGTTGAGCGCGGGCTTCCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCACCAGCCCTCCGGAGCTGGTGGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 3796848-3797120 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINV010000001.1 Saccharothrix coeruleofusca strain DSM 43679 Ga0451103_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3796848 29 96.6 32 ............................T GCCCGCGTGGAACAGCGAGGCCACCCAGTGCC 3796909 29 96.6 32 ............................A CCTCCCCGCCGGCCGTCTCACCCGACCGGTCC 3796970 29 96.6 32 ....................A........ TACCGTGCGTTCCTGCGGTCGGAGGCGGACGC 3797031 29 100.0 32 ............................. GGCTGGGCCAACCTGCAGCCGGGCACCCGGCT 3797092 29 93.1 0 ..........T.................C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GCACCACCTGGCACCCCTGGCCACCGAAACCGCGCACCACCGCCACAACAGCGACGTCAACGACCTCGCCCACGAAGTCCACCTGCTCCGATCAACCGCCGCTTGATCGGATACCGCGCGGGCCACAGTCCCAGCCGCCCACGTCACGACGCATCTCGCCGTCGCCCGGTGGCGCTGTTGTCGAGGCTGGACATCGCCTGCCGTCCGATCAAGCTTTCCGCTTCCCGATGACGTCCCTCGTGGTCAGCGATGAACCGACATATGGGTCCGGCCACGCCCTCAAGTACCTGATCGCGCTCACCGGATAGCCGACTGATCAACTACTTCAGGTCAAGCCGAGCCCGTCAAATCAGCGTGTCCGCTGAGCAGTTGGAGCCAGCCGCCGCAGGTACCCCGGTGAGTGCCCGCAGACCGGCCCCCTGTCCTGACCACTCAGTGCCAGCCCGCACAAACCGATGCCAAAACAGCGGAACGCCGTGTAAAGTGCCTGGTCAGAAAGT # Right flank : CGCGACGCCGCGCTGATTACCGCCTACCGGATGGCCAGCGCCGCGAGGCAGCTACGACCAACGGGGAGAAACGCGCCATCCAGCGGATGCGTCGTTCCGGTTTGCTAATCGCCCTCTCGGGCCGCCTTGCGGAAGAACGCCCCGGTGATCCGGGCTGCCGCCTTAGGCGGGAGGACGCGGCCGAACATGAAGGCCAGAAGGGCGTTGACCCGACCGTCGACGACCACGGGGGCGCGGCTGCGCAGAGCAGCCATGACGGTGTCCGCGACCTGCTCGGGCTGCCGCGTTCCGGGAACGCGGCGGAGGTTCATCGGTGTAGCGGTCGAGCCGGGGCTGACCGCCACGACCCTGACTCCGGTGCCCCGCACCTCGTGCCAGAGCGATCGGGTGAAGGAGACCACGAACGCCTTCGACGCCGCATACGTGGCGTTGTAGGGCCCTGGCGTGTACGCGGCGGTGCTGGCGATGTTCACGATCGCGCCCCGGCCGCGAGCCACCAT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //