Array 1 18555-18192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYF010000012.1 Bacillus pumilus strain 179-F 6C1 HS NODE_12_length_115368_cov_172.042163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18554 32 100.0 34 ................................ CTAAAGTTAGCGAAAGTCATTTTAGGGCTGTCAT 18488 32 100.0 35 ................................ ACGCTTGATAAGCCTTGTTTTCCTGATTGTGCTAC 18421 32 100.0 34 ................................ CATATCAGTTATGCTCTTTTTTTCGTTCATCGCG 18355 32 96.9 34 ...................C............ AATACGTAGTTCAGCAAACTATCGAAGTGTACAA 18289 32 93.8 34 ...............G...C............ CCATCCGAAAACTCAGTAATGAGTGATTTTAGTG 18223 32 93.8 0 ............G......C............ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 97.4 34 GTCGCACTCTACATGAGTGTGTGGATTGAAAT # Left flank : TGGATTGAAATTATAATTCGGATGACTTTTCATATCATCCATTCTCGTCGCACTCTATATGAGTACGTGGATTGAAATAACAGGTTTCGCGACACCTTGACCAACCTTTTTGTCGCATTCTATATGAATGCGTAGATTGAAATTCTTCAGCATAATTTTCTAGCTCCACCAATTTCGTCGCACTCTTCATGAATGGGTGGGTTAATAATTGAGAAAACATAACTCTGCCTCCTGACTCAGTAGTCAAGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAACTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATAAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGAAGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGACGGAAATCACA # Right flank : GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGTGTCGCACTCAACATAAGTGCATAGATCACTGTTTCTGCGAATTACATAAATTCAAATATCTATCCAGTTCAAAATCTACACAAATGAAAAATCAAAATAATGTACTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAGTTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCAACAAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCGTAATGATCCTTGTATTTATCCACTTCCCACCGATAGACAGGAGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATCTTCATAATTTCAGTATCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19211-18846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYF010000012.1 Bacillus pumilus strain 179-F 6C1 HS NODE_12_length_115368_cov_172.042163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19210 32 100.0 36 ................................ AGTTCATTGCCCCACACACCGACGGCAGTCCGATTT 19142 32 100.0 35 ................................ CCTTCCTCTACTCGCACACCGTTACCCTGGATGTC 19075 32 93.8 35 ..T........T.................... TATAATTCGGATGACTTTTCATATCATCCATTCTC 19008 32 93.8 33 ...........T......A............. AACAGGTTTCGCGACACCTTGACCAACCTTTTT 18943 32 87.5 33 ......T....T....A.....A......... TCTTCAGCATAATTTTCTAGCTCCACCAATTTC 18878 32 84.4 0 ..........T.....A..G....G..A.... | T [18849] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 93.2 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACGGTAGGAGAAGCATTCAAAGTAGATGTCATGACCCCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATAAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCAGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCGGGTTATGGAAGGCTTAAAATGGACCACGTCATTTCGTAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACGAAAATGAGAAAAAATGTATATTTTTTAAGGGTTAAAACAAAATTCTATATAGAAACTTAAGGGTTTTGACGATCATTACCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TGAGAAAACATAACTCTGCCTCCTGACTCAGTAGTCAAGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAACTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATAAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGAAGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGACGGAAATCACAGTCGCACTCTACATGAGTGTGTGGATTGAAATCTAAAGTTAGCGAAAGTCATTTTAGGGCTGTCATGTCGCACTCTACATGAGTGTGTGGATTGAAATACGCTTGATAAGCCTTGTTTTCCTGATTGTGCTACGTCGCACTCTACATGAGTGTGTGGATTGAAATCATATCAGTTATGCTCTTTTTTTCGTTCATCGCGGTCGCACTCT # Questionable array : NO Score: 8.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 27098-26867 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYF010000012.1 Bacillus pumilus strain 179-F 6C1 HS NODE_12_length_115368_cov_172.042163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27097 32 96.9 34 .............A.................. AATAGAATATGAGGAAATGCCCTCAATTCATTAT 27031 32 100.0 34 ................................ CACAATTCAAGGTTTACTTGAGCGTTTTTATCTG 26965 32 96.9 35 ............C................... TCACGTTGTAAATAAGTTTATGTATTGTACTCGCT 26898 32 84.4 0 ............C........C.AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TTTACTATTAGTATCAACGTTGTTGCCGTCGCACTCTACATGAGTGCGTGGATTGAAATGCCGGCTCCATAAACTCATATGAATCAATGTCCTTGTCGTACTCTACAAGAGTGCGTGGATTGAAATATTGACGCTTTACTTTCATATAGGCTGTCATAGTCGTCGTACTCTACAAGAGTGCATGGATTGGGCAGCATCATAGACCAAGTAACCCCCGGACTGGCTCAGTAGTCCATATTTTTAAATAAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGAATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATTCCCGAGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATCTGATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTCGACTATTATTTCCTAAAAAATGTTACAATTTGGGCGGAGATCGCA # Right flank : GATTGTGTCTTAAACGGGTATGCCACCTAAAAGACCATCTTCTTACAACATCCTCTTTCAGATACAAAAGCCATCAAAATATACTGTTCATTTGTATAGTGAAAACATGACTTTTTGCAGTCATGTTTTTTTCTTCTTTTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAACCATGGCGGACTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGCTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGA # Questionable array : NO Score: 6.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 27704-27405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYF010000012.1 Bacillus pumilus strain 179-F 6C1 HS NODE_12_length_115368_cov_172.042163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27703 32 100.0 33 ................................ TGGATCAATCGCTTTACCATTTTTCTCAATCTG 27638 32 100.0 36 ................................ GTTAGCAACTTTACTATTAGTATCAACGTTGTTGCC 27570 32 100.0 35 ................................ GCCGGCTCCATAAACTCATATGAATCAATGTCCTT 27503 32 93.8 35 ....T........A.................. ATTGACGCTTTACTTTCATATAGGCTGTCATAGTC 27436 32 78.1 0 ....T........A......A.......GGCA | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 94.4 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCGGCTAGGCGAAACGAGACAAAACATCTCAAACATTCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGGGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACCGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATACGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATTCCTGGAACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : GCATCATAGACCAAGTAACCCCCGGACTGGCTCAGTAGTCCATATTTTTAAATAAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGAATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATTCCCGAGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATCTGATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTCGACTATTATTTCCTAAAAAATGTTACAATTTGGGCGGAGATCGCAGTCGCACTCTACAAGAGTGCGTGGATTGAAATAATAGAATATGAGGAAATGCCCTCAATTCATTATGTCGCACTCTACATGAGTGCGTGGATTGAAATCACAATTCAAGGTTTACTTGAGCGTTTTTATCTGGTCGCACTCTACCTGAGTGCGTGGATTGAAATTCACGTTGTAAATAAGTTTATGTATTGTA # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //