Array 1 455438-456930 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGX01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F63H1 NODE_2_length_635730_cov_17.4898, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455438 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455499 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455560 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455621 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455682 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455743 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455804 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455865 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455926 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455987 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 456048 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 456109 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 456170 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456231 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456292 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456353 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456415 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456476 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456537 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456598 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456659 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456720 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456781 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456842 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456903 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 473062-475026 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGX01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F63H1 NODE_2_length_635730_cov_17.4898, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 473062 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 473123 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 473184 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473245 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473306 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473367 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473428 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473490 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473551 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473612 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473673 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473734 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473795 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473856 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473917 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473978 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 474039 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 474100 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 474161 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 474222 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474283 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474345 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474448 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474509 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474570 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474631 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474692 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474753 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474814 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474875 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474936 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474997 29 96.6 0 A............................ | A [475023] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //