Array 1 4331-3883 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGPD01000042.1 Acinetobacter seifertii strain MI30-324 NODE_47_length_56466_cov_44.338097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4330 28 100.0 32 ............................ ATATACTTTTATTTTGTGAGAATAGTGATTTA 4270 28 100.0 32 ............................ ACTACCTGCGCGAACAGGAGTGGTTTCGGATT 4210 28 100.0 32 ............................ AAGCACGTTCAATGGCCTTAACATCCGATTCA 4150 28 100.0 32 ............................ AAAATTAATATTAAACGACTTATGAGCTTCAA 4090 28 100.0 32 ............................ AGTACCAGTACCTGTGCCAGTATCAGTACCAG 4030 28 100.0 32 ............................ ATTGATAGCCAAATAGCGCCACAACGCTTTAT 3970 28 85.7 32 ...A..T.....G......G........ TCCACCTTGCAATTCGGCAAAATGTGGTTTTC 3910 28 82.1 0 ....C......TC...........A..G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCAGTGGGAATAAGGAAATCTTCATTTAATAAAGTTCGAGCACTGATATAAGGTAAATCAAGTGCTTGTTGATTACTTAAACGAATTCCGCCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACGGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTATCCAATTTTTAACATATTATTTGAAAAATGAAAGTATTGAAGGCGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTTATAAATTTAGCCTAAGACGATTAGGTTGTATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAAGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGTTCCTTTCAAAATTGAAGACGACGTATTTTGTCGTTAAAAGGCCGTATTAAGCTGATCAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTACTATATTTAAAATTTAACAATAAACTATGCACGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCAGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTGGCATGGGTTGTAGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGTAAGTAGCTTATTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9421-10768 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGPD01000042.1 Acinetobacter seifertii strain MI30-324 NODE_47_length_56466_cov_44.338097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9421 29 96.6 31 ............................G AGCAGTTATAAGCACATGATCTAACCGCTTC 9481 29 100.0 31 ............................. TTGACAGCGTAGTCTTTACCGTTCAAGACAA 9541 29 96.6 31 ............................A GAGAAACGAAATGCTGAATTACAGGCTAAAA 9601 29 100.0 31 ............................. TTTCAGAGAAATATAAATTATCAGTTATATG 9661 29 100.0 31 ............................. CATAAGCAAAATCGTAGCTTGAACCATCCAT 9721 29 100.0 31 ............................. GACTAAGCTTGTACTTTCTGATTCTTTGATT 9781 29 96.6 31 ............................A TAAGACACCTGAATTTAATGGCCCTTCAATA 9841 29 100.0 31 ............................. AAAAACCCGACGCATACCCCAAACCAGAGCA 9901 29 100.0 32 ............................. TACGAAACAGTAGCAAATCAGATTATTTCAGA 9962 29 89.7 31 ...G........A...............A GATGTGTCAGTACCAGCTACGAGAATGTCGC 10022 29 89.7 31 ...G........A...............G TAAATCGTAATTTGTGCAGTAGGAGCCATTA 10082 29 89.7 31 ...G........A...............C AAATCAGCACCGCAACAGTAAGCATGCCGAC 10142 29 93.1 29 ...G........A................ TGGACATCAAGAAAGTCCGTCTATCCACA 10200 29 79.3 31 ..CG........TC........G.....C TTCATTAAAGAAGTTCATATTTTTTAATTTT 10260 29 89.7 31 ...T........AC............... GCTTAATTATTCGGAGCATGTGAACCTCCAA 10320 29 89.7 31 ...G........A...............A GTTATCAATATAACGATATTCAAACTCACCC 10380 29 93.1 31 A..G......................... TACGATGCTACAACAGTTTTCACCATTACAG 10440 29 82.8 31 ...AG.......A.............G.C ACTTAAGAACCTATTTGGCGTTCGTTAAAAC 10500 29 89.7 31 ...G.......TA................ ATGCGCTAGAGAAGATTTCAGCAGGTTTTCC 10560 29 93.1 31 ...G.......T................. ATCATTGCGCGATAGAACGCATCAATTAATG 10620 29 86.2 31 ...G........CC..............C ACCAACCCGCTGTACCTGTATGCCCAACCGC 10680 29 82.8 31 ...A........CC.A............A CAGCTTTATTCGCAGCTTTGAGACCTGCATC 10740 29 79.3 0 ....G.......AC..........ATT.. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 92.1 31 GTTCCTCATCGCGTAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTACCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAACATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTAAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGTTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTACGGTCGGGTTCCTAAACCACAAGTATTCTAGGAAGCGGACAAACTGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTAAAATATGCAAATTTGATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCAGCGTCGAAGCCAATAACATCCCCATGAATGTCTGAACATCATAGCATAACTAAAATAAAATGCTGTGCAATTTATCAACAGTCTGCTACTGATGAACATATTTACA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCGCGTAGATGATTTAGAAAT # Alternate repeat : GTTGCTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //