Array 1 341084-339895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJEJZ010000003.1 Streptomyces sp. CT1-17 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 341083 29 100.0 32 ............................. CCGTCGATGGCCACCGCCGACCAGGACGACCC 341022 29 100.0 32 ............................. ACCGCATGGATGGCGATGCCCAGGCCGCGGCT 340961 29 100.0 32 ............................. TCTGGCGACAGATGCGTTCCGGCGGCGCATCC 340900 29 100.0 32 ............................. ATCTTCTCCTCCGGGGCCTTCGCCCCCCGTTC 340839 29 100.0 32 ............................. CGGGTCGCTGCGAGAGACTGCGCGCGAATATG 340778 29 100.0 32 ............................. CACGTGCCCTTGGAGTTCCACGTCCCCCTGGT 340717 29 100.0 32 ............................. GGGGGCTACGCATGATCGCCCGCCTCCTCTGC 340656 29 100.0 32 ............................. GCGGTCCAACCCCCCTCGCAACATGGCGGTGC 340595 29 100.0 32 ............................. CCGGACGGGATAACACGCAGGTTCTCGGGCCA 340534 29 100.0 32 ............................. CCCCCTCGCTCCCTCGCACGCGAGGGAGCGAG 340473 29 100.0 32 ............................. TGCATGCCATTCACGCGGACGTTGACGCTCGC 340412 29 100.0 32 ............................. GAAGCGGTCCGGCTATCCCAAGAACTCATCAA 340351 29 100.0 33 ............................. TGCATAGGGGACGTCCTCCGGCTGAGGGGGGGG 340289 29 100.0 32 ............................. GCGAGCGGGGTCGAGGACCAGGCCGCCCTGGT 340228 29 100.0 32 ............................. GAGCGAGAGGGCCGGGGGTTCCCGCCCCCGAC 340167 29 100.0 32 ............................. GTCCGCTGAGGAGCCGATGCGGACCCAGACCG 340106 29 100.0 32 ............................. ACCCAGTAGCCGCGGTTCCGGGACTGCGGTAC 340045 29 100.0 32 ............................. GAACGCGAGCGGATCGCCGCGGCGATCGCCGG 339984 29 100.0 32 ............................. CCGAGCAAGAAGGACCGGGCCTGGCTCCACGA 339923 29 89.7 0 .............C...A..........T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 CTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : CGGCATCAACCACGACGGCCCCGAGGACTACGGAGACGAACTCTGGTGACCGTCATTGTCCTCACCAACTGCCCAGCCGGACTACGCGGTTTCCTCACCCGCTGGCTACTGGAGATCTCCGCCGGCGTCTTCGTCGGCAACCCCTCCGCCCGGGTCCGCGACGCCCTCTGGCAAGAGGTCCAGCAGTACGCAGACCAAGGCCGCGCCCTACTCGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACACCTGGCACCCGACCGACCACGAAGGCATCACCCTCATCCACCGCCCCGACCCAAACGCGCCGCCCCCCGGGCAAGCCCCAGCAGGCGGACCACGCCCCGGCTGGAGCAGAGCCGGCAGACGCCGCCGCTTCGGAAGAGGCTAAAGCACACCATGCAAGATATGCACGATTTGCCGGAATCAACGAAAGTACTCGAAAACCGCTCCCTGCGCCCATAAACCCGCAGGTCACCCAGT # Right flank : GCCCCTGTTCTGCGCCCTCACATACCTGTTGCGCGACACGCAAGTTCATCGAGGCAGGGCCCCACCCCCGACCCGAGGGCTGGTCCACTCGCACCACACCACCTTGCCCGGCGACCGTTCCGCCACTCCCCATTTGTCGGCCAGCTCCGACACCAGCAGCAGCCCGCGCCCGCTCTCGTCCGACCGGTCGGGGGCCTGAGGTACGGCCGGTACCCCGTCCCCGCTGTCGTGGACCTCGACGCGCACACCGTCCCCGCAGGGGAGCAGCCGCAGCAGAAAGCCCCTGCCAGGTGGTGCGCCGTGCACCAGGGCGTTGGTCGCCAGTTCACTGACGCACAGCGCCACGTCGTCCGCGCGCTCACGCACACCCCAGTCGGCGAGCACCTCGTGCGCGAACGCCCGCGCAGCTGGGACGGACCGGCGCTCTCGGCGGTAGAAGCGCTCACGTGGGGAGAGGGGTGGAGTTTCGTTGTTCACGTGACGAGGGTCACGCTCCGTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 351535-353101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJEJZ010000003.1 Streptomyces sp. CT1-17 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 351535 29 100.0 32 ............................. GCCTTGGCGACCTCGGCGACCTCGGCGGTGAT 351596 29 100.0 32 ............................. ACGCTGACCACGGAGGCGTTCTCGGCCCACCC 351657 29 100.0 32 ............................. TCCTTGGCGGGGCGGTGCAGGTCGTGGATGGC 351718 29 100.0 32 ............................. GACCCGCACCGCGCGATCAGCGAGGCGAGCCG 351779 29 100.0 35 ............................. GGCGCGGCGGCGTTCCGCACGTCGGTGGCGTGCGG 351843 29 100.0 32 ............................. GAGGCGCAGGCGCGGACGAGCGCGGCCCGGTC 351904 29 100.0 32 ............................. GACGTCGCGGGCGCGCAGCTCGTCGCCGTCGA 351965 29 100.0 32 ............................. CGGTACAGGGTCGCGGAGGACAGGTATTGGGT 352026 29 100.0 32 ............................. AGGCCGGTGTGCAGGGGATCGTGCCCGGACCC 352087 29 100.0 32 ............................. ACTCCGACCCGCCACGTCGACCGGGAGCCGGC 352148 29 100.0 31 ............................. GCTGGTCGGCCGATATCAGAAGATCGGCCGC 352208 29 93.1 32 AC........................... ACCGCGCACCTGCCCGGCGCCGACCCGATCCC 352269 29 100.0 32 ............................. GCCTTCTCTGCGAGGGTGGCGAGGCCGCCGCG 352330 29 100.0 32 ............................. AACGACCGCGCGGACGCCCTCCAGCGCCGCGC 352391 29 100.0 33 ............................. CGCGGCCGGACAGCAGCAGAGCGGGCAGCCGTC 352453 29 100.0 32 ............................. ACCCCCGAGTTCCGGGGCACCGCCGTGTGCGA 352514 29 100.0 32 ............................. CCTGTCTACTACGCCCGGTGGGTGGAGTACGG 352575 29 100.0 32 ............................. GCCGCCCTCACCCTGGTGCGACGCGGTGAAGC 352636 29 93.1 32 ..G.........................G GTGAAGACGAACGTCACGTCGCCGGCGTCCGC 352697 29 96.6 32 ..G.......................... AAGGCGGACGTCTACGCCGCGACAAAGGGGAG 352758 29 93.1 32 ..G........G................. GACCCGCAGACGGCCTCCCTGCTCCACCACGA 352819 29 89.7 41 ..G................A.....T... GGGCCGTCGGCGGCGAACGTGACGTTCGCGGCGTTCGCGAC 352889 29 93.1 32 ..G......................T... GGCTACGACGGATGGCTGATCGACGCCACCGG 352950 29 93.1 31 ..G........G................. GCAGCAAGGGCGACAAGGACCCGGCCGAATG G,T [352967,352976] 353012 29 79.3 32 ..G....T...G...C........CT... AACACCCCGAACCCGACGGGCGGCGTGCAGGT 353073 29 82.8 0 ..G...............T...G.TT... | ========== ====== ====== ====== ============================= ========================================= ================== 26 29 96.7 32 CTCCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : TGGCACGCGAACGCCGGGGTGGCCTTGCCGATGTCGTGCACCCCGGCGAGCCACACGGCGAGGGCACGGGCATCCGGCTCTCCGCCGGGCAGCGCCTCGGACACCAGCTTCCGCACGCTTGCGGGCAGCCACTGGTCCCACAGCAGTCCGGCCACTGCGGCACTGTCCTCCATGTGCCGCCACAGTGGCAGCCAACCATCGCTCTCACGATCATGCTTCGCCCACACCGACCGTGCCGGCTCCCCAAGCCGACGCAGCAGGGCGGAACGGGCGTTCCCCCCATTACTCATGGGTGATTGATACAGGGAAAACCCGGCTAGCCATGCCAAAACGAAGAAACTGAAGAATCGGTCCAGGGTCAGCTCTCCCAAGACATACGATGAGCGGCTGACCCTGGAGACGTTACGATCGCGAGCATCACCCGAACGCCCTATTTGCCGGAATCTGCAAAAGTCTTGGAAAACGCGCTCCCGCGCCCATAAACCCACAGGTCAAACAGT # Right flank : CGTGATCGCCGCTCGGGTGTGGCGGCGCTTGGTCGGCCCTGGCCCTGTGGCATGGCGCAGTGGAACCCGTCTCGTCGTTGATCTCTACTCTTGTTCAACTCAAGCGGTATTCGTCGGAGTATACTCTTCGTGTGGATACGACGATCAAGATCGATTCAGAGACCCGTGACAAACTGGCGGCTCTGGCTGACGCCAGGAACATGTCGATGCGAGCATTGATCGAGGAGTTCGCTGCAACCGCGTTGACTCCTGCGCAGTTGCGTGAGCGGGCCGAGCGTACGGACGCTTTCCTGGCCGAGGAATTCGGGCACCAGGTCAGCGAGGACGAGGCCGGAGCGCTGCGCGAACGGATGCGTCAGGCCCAGAGTGCAGGTCCGGCCCGGGGCACGGCCGCGTGATCGTCGAGCACTACATCCTGGACAGCCCCACGCTCCTCGCCATGGGAGGCAGTAAGCAGGTCTCCGGGCTCATCCATATCGCTGCAGGGGATCCCACGGTGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 354033-354371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJEJZ010000003.1 Streptomyces sp. CT1-17 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 354033 29 100.0 32 ............................. GGGGAGACCGACGAGTCGGGGGTGCTGGTGGA 354094 29 100.0 32 ............................. TGGACGGGATCCTTTGCATAGCCGCGGATCTT 354155 29 100.0 32 ............................. GCCACTACTCCGGGTCTTCTGGTCGGTCACAT 354216 29 100.0 32 ............................. CGGCTCGAGGACGCGGTCGCCGCGAAGTGGCA 354277 29 82.8 37 ...............A.........GATG GTTCCTGGACCACACGCCCGCCGATGAAACCGCTGTC 354343 29 72.4 0 .......T....T........C.AC.GTT | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 92.5 33 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : CCTCGCCATGGGAGGCAGTAAGCAGGTCTCCGGGCTCATCCATATCGCTGCAGGGGATCCCACGGTGCGTTTGTGGGTTCCCATCGTGTGTGTGCTGGAGGCTGAGCGTGAACGGGCCGGTCTCGTGGACTACTTGGGCATCCTCGACGTCTTGCATACCCTGGACGCCGACTATGCGATGGCGCACAGGATTGCTGACCTGTATCGCCGGAATGTTCCCTTCGGTGTGGGGGCTGCCGTGCACGCCGCCCAGCCCACGTTGGACCGTCCTGACGGTGCTCTTGTCGCGACGGTTGCGCCCGCCGACTACGACGGCCTCGGAGCTCCGGTCATGGATCTCAATCGGTAGCCGAACACCTGGTACGGCCGATGCGCGAGCTTCCTCCGGCTGGGCTGTCCGGTAGTAGTCTCGATGCATTGAGGGAATGGCCCTTTTGTCGGAATCTGTAAAAGTCCCCGAGAGTGCGTCGCCGCGTCCATGCGGCCGCAGGTCAATCAGT # Right flank : TCCGACCGAGCCGCCCGGAATGACTTCTACAACCGCTCCGACAACATGGGACCCATGTCGGGAAGCGAGAACTCTCGTGGCGGTGCGGTCATGGACGCCACCTACCGCCAGGATGTCCACCCCTCCCTCTACTCGTGCAGCTAGGGTCCTGTCCCGAAGTGCAGGAGCCACCTCATGAACCCTGGATCCGTCCTGTCCGCCCTGCCCGGCGCCGCTTCCGTTTCCGGTCTGGCTTCCGCGTGGCGGTGGTCGCCGAACCCGATGTTCACGTTCACCGCTGCGCTCTCCACCGACGGTCGGCACAACCTGCAGGTCAACGTACGCGGCCCCTACGGCGAGGGCTTCGTCACAGCACTGCTCGCCCACGCGCGCGCCCATGGTGGCACGTTCGTAGAGCAGAGGCGGCCTCTGGTGGCCGTCGGCGGCTTCCAGTACGACGGGGCGGCGTTCGACACGGTGGGGGTAGCGGCGCCCGAGGTGCACGGCTACCACGCCGCGGA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 355428-356493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJEJZ010000003.1 Streptomyces sp. CT1-17 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 355428 29 100.0 32 ............................. GTCCGGACATGCATAAGGCCCTGACCCGAACT 355489 29 100.0 32 ............................. CTGGCGCGGGCCATAGACCGGCACCGCGACGA 355550 29 100.0 32 ............................. GAAGCGGGCTCCCTCCCGCAAGAGCGGGAGGG 355611 29 100.0 32 ............................. TGCTGTGCCATGCGGCGCCGGGAGGACGTGTC 355672 29 100.0 32 ............................. GGCCCGCCAACCGGCGGAGAGCATGCAGCTGC 355733 29 100.0 32 ............................. CCCGAAAGGACCACGCCGTGAAGGCTCTCACC 355794 29 100.0 32 ............................. ACTCACCGGCGCCTGGACCAAGTGGGCATCCC 355855 29 100.0 32 ............................. GCCGTCGCAAGCGCCCGCCAGTTCGCCGTGAA 355916 27 89.7 32 ....--...................C... CAGGCTGTCATCGACGCCGAGGAGCAGCTGCC 355975 29 100.0 32 ............................. AGCACACCTACACCTGGGGCCGGTGCGCGCTC 356036 29 100.0 32 ............................. AAGCGATGGGAAAGACGCAACGTCGAATTCTC 356097 29 96.6 32 ..........T.................. AGCCTGTTCGGCAACCTCGGCATCGTCGGCCT 356158 29 100.0 32 ............................. AGTTCGGGCCGTCGGGCCTTCAGCTTCGCGGC 356219 29 100.0 32 ............................. GGCTCTGAGGGTGGTGGGGTCGTCGATCTCAT 356280 29 100.0 32 ............................. CCCAAGGGCTACGGCCAGATGACGATCGCCAA 356341 29 100.0 32 ............................. TCCTCGTTCTCCTTGGTCACCGGTCCACCTCC 356402 29 100.0 32 ............................. GCCCTGATGCGCAAGGAGAAGGGCAACACGGC 356463 29 86.2 0 ...........A.T..........AC... | G,C [356480,356486] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTCCGGCCGGGAGAACGAGGAGGAGGCCTGGGGCAGGTTCCGCAAAATGCTCCAGCCGAACAGGCTCGACCGCACCGAGGTGCCGTTCGTCAAGATGCGCTACGACAACACCCGTACCCAGAGCATGAGCAAGGGCGACGCCCGCGGCTTCGCGCCTCTGGAGACTCTCCAGCGGGAACTGGGGCTGCTCGACGGCGCTCCCGGCAGCTTCGTCGAGTGGGAGAACCGGCACGGCGCCGTCTGGCGGGCGGACAGCAACAGCGACGGCCTCGAGCTGGCACACGACGGCACGCGGGACACAGTGGACACCGACCAACTGCAGGCAACGGCCCGCACCAGCGTCCAATGAGCTCTGCCCCGTGCCCGTTGCCCGCAGAGTTTATGCAGAAGCGTAAGGTGAGCCCGATTTACATCACATGCTGCTCATGTCTCATTTGCCGGGTCCTGTGCAAGTCACTGAAAGCATGCCCCTGAGCCCATAGACCAACAGGTCAGACAGT # Right flank : CTGCGGAGATCGGCTTCAGGGGCGGTGGGTCAGTTCACCGGAGCTTCTCGCGCGTCTGCGCGCCGCTGGTGGGCGGCGCGCAGACGGGTGGGGTGTGCTCGGTGCGGGGGCGGTCAGGCCCAGCAGCCGTTGACGGTGGCGGCGAGGCCGTCCATGGCGTCCTTGATGTCGGTCGGGTCGGCCGTCGAGTTGTTCTCGATGAAGGAGAAGATCCGCCAGTCGCCGTCCTCGGTCTTCGTGACACCGCTGAGGGCGATGGCACCGGTGAGGGTGCCGGTCTTGGCCTGGACCTTGCCGACGGCGCACTCGGAGTTGGGGTCGTCGAAGCGGCCCCACTCCGGGCCGAGGCTCGCCCCGGCCTCACCGGCGACCGGCAGGCCCTCCAGGATCGAGCTGAGGGCGGGGGACTCGGTGATCGAGTCGAGGAGCTGCGCGAGGGTGGCGGCCGGGATGCGGTCGTCGCGGGAGAGGCCGCTGCCGTCGTGCATCTCGAAGTTGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //