Array 1 349106-346014 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNKH01000004.1 Vibrio parahaemolyticus strain C7_2 C7_2_contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 349105 28 100.0 32 ............................ ACTCATCTGTGAAAGGTACTAGATCTGATGTA 349045 28 100.0 32 ............................ AGCGGCAGGATCAACAGTACCAGCAGGGAGAT 348985 28 100.0 32 ............................ AGCGGCAGGATCAACAGTACCAGCAGGGAGAT 348925 28 100.0 32 ............................ TTATTAGGGGTTCGACGCTTAGAAGTAGCCAT 348865 28 100.0 32 ............................ GCCGCCAACATCGGCAGGCCTTAAACTTCCGT 348805 28 100.0 32 ............................ ATTTGTGCGTAAGCGCTAGACTTGCTCAAAAA 348745 28 100.0 32 ............................ AGCCATCAGAGCGGCCTTGATGGTCTAATACC 348685 28 100.0 32 ............................ TCAAGTTTCTGGTTCTGAAGCTGGTAATTATG 348625 28 100.0 32 ............................ TCAAGTTTCTGGTTCTGAAGCTGGTAATTATG 348565 28 100.0 32 ............................ CTTGTCTCTCGGTCTGTTGGTCTTAATCCTAA 348505 28 100.0 32 ............................ TGAATCTGAGGAATCATAGCCTTAAGCTTTTC 348445 28 100.0 32 ............................ AACAGGGAAGCGTCGGAAAGTTTGTCCATCTC 348385 28 100.0 32 ............................ TCGCCGCCGTCGATGTACAAATTAACTGTGCA 348325 28 100.0 32 ............................ AAATTGAGCATTCAAATCGAGCAAATTAATAG 348265 28 100.0 32 ............................ GTTATTTTTTTGTTGGCTTGAGTGGTGTTGAT 348205 28 100.0 32 ............................ AGTATTAACCTTTGCACGAATACGAACACGCG 348145 28 100.0 32 ............................ AAAGTGCGCCTTAATAACCTCTATATAACGAG 348085 28 100.0 32 ............................ TTACAATACTTGCATTGAACCGCGTAAGCGCT 348025 28 100.0 33 ............................ ACAAAAGAAAATTTAACCTGCTATAGAACTTGG 347964 28 100.0 32 ............................ AGCAAGGTATTGAACGTATGTGGTTCCGTCAA 347904 28 96.4 32 ..............G............. TTTCTAGGACGCGCCATCCTTCCATATCTCCT 347844 28 100.0 32 ............................ TTTCTAGGACGCGCCATCCTTCCATATCTCCT 347784 28 100.0 32 ............................ TGTATAATATTTACGAGCACCACGACGTTTCT 347724 28 100.0 32 ............................ AGCAACGCCCATACGCGCAAATCCGGCCTGTA 347664 28 100.0 33 ............................ CACAAGAGCTATTCAATGCATTACGCTACAATG 347603 28 100.0 32 ............................ ATGGCTGCGTATGCAACCACTTGTAAATATTG 347543 28 100.0 32 ............................ TTAAACCAGGCTCTAAAGATTCGGCTTGGTTT 347483 28 100.0 32 ............................ TTATTGTATACTTCTTGCTCGCCAAGATGAGC 347423 28 100.0 32 ............................ TACCAGCGCGAACCGTTACGCGTAAATATCCC 347363 28 100.0 32 ............................ TATACGGGCGGCGGTGTAAATACTGGCATTTC 347303 28 100.0 32 ............................ TTAAAGAACAGGAGAAGCTGAACAGAATTAAA 347243 28 100.0 32 ............................ GTTATCGGTGTGTTTGGGTTCACGTCGGGGTC 347183 28 100.0 32 ............................ AATACAAGGAATTAGCGGCATCACTAGCCAAT 347123 28 100.0 32 ............................ AATACAAGGAATTAGCGGCATCACTAGCCAAT 347063 28 100.0 32 ............................ AGATAACGATAAAGCAGGCTGGGAAGTCGTTC 347003 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 346943 28 96.4 32 .............C.............. TTTTTAATTTCGCTTTCTAGGCTAGTAAATTG 346883 28 100.0 32 ............................ TCTCCGTGTAACTCTTTGGGAATAATGAGATT 346823 28 100.0 32 ............................ ATACGTAGTTATGGCGCGAGTCATGGCCTGGA 346763 28 100.0 32 ............................ AAGGCAAACCACCCATCACGATAAAACGAATA 346703 28 100.0 32 ............................ AAGCGGCGAGGGATAGAAAATTTGCGGGATAT 346643 28 100.0 32 ............................ ATTTCAAGAAGCCATTGACGCACTGTCATCAA 346583 28 100.0 32 ............................ AAGAATCGACGCACCAAAACTACTATTTTTGA 346523 28 100.0 32 ............................ TACCGGAGATGGACAAACTTTCCGACGCTTCC 346463 28 100.0 34 ............................ ATCATCGATTAGCGTTGAGCGCTATGTTGATTCA 346401 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 346341 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 346281 28 92.9 32 ..........A..C.............. TTTAATCGCTGAATCGGCGGGGTTAGTAATCT 346221 28 89.3 32 ...A......A..C.............. GCCACGCGATACAGTGAGAACAACGGCCAATC 346161 28 89.3 32 ...A......A..C.............. AATAATGGACTTTTCATTTTCAACGGAAAAGC 346101 28 85.7 32 ...A......A..C..A........... AGGCTAAAACCAACCGCACAACGACGATAACC 346041 28 85.7 0 ...A......A..C............G. | ========== ====== ====== ====== ============================ ================================== ================== 52 28 98.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : | # Right flank : GGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAAGGTAATAAATTTTTTGAAGTGTTACGAAAATCCATAATTATTCATGTTTAATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 301-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNKH01000005.1 Vibrio parahaemolyticus strain C7_2 C7_2_contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 300 28 100.0 32 ............................ AATAACCTCGCCAGAGTCAACGATGTTTTAGC 240 28 100.0 32 ............................ GTTACGCGGCCGAGCACCGAACCAGCCGGCCA 180 28 100.0 32 ............................ GTAAAAAGTTTTCGCCTCGCCCTCGCCGACCA 120 28 100.0 32 ............................ ATTCCAGACGCCTGGTTGACGGTGTACTGTCG 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGTTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : ATCGTAGCTTGGATATTGCTACTTCATTTGCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //